View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7113_low_31 (Length: 328)

Name: NF7113_low_31
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7113_low_31
NF7113_low_31
[»] chr5 (5 HSPs)
chr5 (11-152)||(36001678-36001822)
chr5 (151-197)||(36001842-36001888)
chr5 (15-55)||(36012900-36012940)
chr5 (151-215)||(36013037-36013099)
chr5 (151-200)||(36015795-36015844)


Alignment Details
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 36001678 - 36001822
Alignment:
Q  11 gatcaagtgcattgttgacggttcaaacactctcatcagaactagcttctttacattcacggattaagaagctcgaatttgct---tccataatatttgg 107  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||   |||| |||||||||    
T  36001678 gatcaagtgcattgttgacagttcaaacactttcatcagaactagcttctttacattcacggattgagaagctcgaagttgcttcatccagaatatttgg 36001777  T
Q  108 tggagacaagtcttggttgtagaaaattgaagagttgaaagaagc 152  Q
    ||||||||||||| || ||  |||||||||||| |||||||||||    
T  36001778 tggagacaagtctaggatgcggaaaattgaagaattgaaagaagc 36001822  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 36001842 - 36001888
Alignment:
Q  151 gctaaaatatgtgcagatagagagtatgaacgaatcaaggtagcata 197  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  36001842 gctaaaatttgtgcagatagagagtatgaacgaatcaaggtaacata 36001888  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 36012900 - 36012940
Alignment:
Q  15 aagtgcattgttgacggttcaaacactctcatcagaactag 55  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  36012900 aagtgcattgttgatggttcaaacactcttatcagaactag 36012940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 36013037 - 36013099
Alignment:
Q  151 gctaaaatatgtgcagatagagagtatgaacgaatcaaggtagcatatagatatattttttgttt 215  Q
    |||||||| |||||||||||||  |||||| ||||||||||| || |||| || |||||||||||    
T  36013037 gctaaaatttgtgcagatagag--tatgaatgaatcaaggtaacaaataggtacattttttgttt 36013099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 36015795 - 36015844
Alignment:
Q  151 gctaaaatatgtgcagatagagagtatgaacgaatcaaggtagcatatag 200  Q
    |||||||| |||| ||||||||| ||| |||||||||||||| |||||||    
T  36015795 gctaaaatttgtgaagatagagaatatcaacgaatcaaggtaacatatag 36015844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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