View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7113_low_35 (Length: 303)
Name: NF7113_low_35
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 176
Target Start/End: Original strand, 25597322 - 25597491
Alignment:
| Q |
6 |
aaaatcatctctacttaaaacatatttccataatatttatgaattatttggagtaaattctaataannnnnnnnngttttggt-aaattctaatcattat |
104 |
Q |
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| T |
25597322 |
aaaatcatctctacttaaaacatatttccataatatttatgaattatttggagtaaattctaataatttttttt--ttttggttaaattctaatcattat |
25597419 |
T |
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| Q |
105 |
gaatcataaacagatgtgaatgagtatgtggaataaatcatcaaattctaaaatttcatatgcattaacttg |
176 |
Q |
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| T |
25597420 |
gaatcataaacagatgtgaatgagcatgtgggataaatcatcaaattccaaaatttcatatgcattaacttg |
25597491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 25409445 - 25409517
Alignment:
| Q |
103 |
atgaatcataaacagatgtgaatgagtatgtggaataaatcatcaaattctaaaatttcatatgcattaactt |
175 |
Q |
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| T |
25409445 |
atgaatcataaatatatgtgaatgagcatgtgtaatatatcatgaaattaaaaaatttgatatgcattaactt |
25409517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 25398122 - 25398186
Alignment:
| Q |
103 |
atgaatcataaacagatgtgaatgagtatgtggaataaatcatcaaattctaaaatttcatatgc |
167 |
Q |
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| T |
25398122 |
atgaatcataaatatatgtgaatgagcgtgtgcaatatatcatgaaattcaaaaatttgatatgc |
25398186 |
T |
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