View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7113_low_36 (Length: 301)

Name: NF7113_low_36
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7113_low_36
NF7113_low_36
[»] chr4 (8 HSPs)
chr4 (13-285)||(46869043-46869321)
chr4 (166-280)||(20447388-20447502)
chr4 (137-269)||(30783211-30783342)
chr4 (166-249)||(10544938-10545021)
chr4 (136-301)||(46867220-46867385)
chr4 (149-236)||(51537063-51537149)
chr4 (166-195)||(3428646-3428675)
chr4 (167-286)||(32838502-32838620)
[»] scaffold0426 (1 HSPs)
scaffold0426 (139-301)||(4710-4872)
[»] chr8 (1 HSPs)
chr8 (137-289)||(7001241-7001393)
[»] chr3 (1 HSPs)
chr3 (166-284)||(44866935-44867052)
[»] chr5 (2 HSPs)
chr5 (187-270)||(23136663-23136746)
chr5 (239-289)||(14062534-14062584)
[»] chr1 (4 HSPs)
chr1 (208-287)||(6394876-6394955)
chr1 (240-292)||(12659361-12659413)
chr1 (208-278)||(49540062-49540132)
chr1 (208-252)||(26778593-26778637)
[»] chr7 (1 HSPs)
chr7 (138-287)||(47304369-47304518)
[»] chr6 (2 HSPs)
chr6 (149-215)||(6367551-6367617)
chr6 (239-272)||(2558330-2558363)
[»] chr2 (1 HSPs)
chr2 (166-289)||(34151645-34151768)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 285
Target Start/End: Complemental strand, 46869321 - 46869043
Alignment:
Q  13 aatatcatatctttgttgattcacacaggttccaacacgtacaactgactagaatagagatcat------ggataccggcgatcttgaaatagagatcaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||    
T  46869321 aatatcatatctttgttgattcacacaggttccaacacgtacaactgactagaatagagatcatactcttggataccggcgatcttgaaatagagatcaa 46869222  T
Q  107 tgcttagaatagttattcgagtgatcagctattttggtcctcaaatttatatgcacggctcaatttcatcctttaatttttcaaaatagcaaataggtta 206  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  46869221 tgcctagaatagttattcgagtgatcagctattttggtcctcaaatttatatgcacagctcaatttcatcctttaatttttcaaaatagcaaataggtca 46869122  T
Q  207 ttgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctcatcgttaacggtgttgacgtgtcacgttaagcg 285  Q
    ||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||||| |||||||| ||||||||||||||    
T  46869121 ttgaattttataaatgtcaatcaatttagtttttctgtcaaatctaatcgttaacagtgttgacatgtcacgttaagcg 46869043  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 280
Target Start/End: Complemental strand, 20447502 - 20447388
Alignment:
Q  166 tcaatttcatcctttaatttttcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctcatcgttaacggtg 265  Q
    |||||||||||| | ||||||||||||||||||||| ||   ||||| || |||||||||||||||||||| | | |||||||||||| ||||||| |||    
T  20447502 tcaatttcatccctcaatttttcaaaatagcaaatatgtccctgaatcttataaatgtcaatcaatttagtctcttcgtcaagtctcaccgttaaccgtg 20447403  T
Q  266 ttgacgtgtcacgtt 280  Q
     |||||| |||||||    
T  20447402 ctgacgtttcacgtt 20447388  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 269
Target Start/End: Original strand, 30783211 - 30783342
Alignment:
Q  137 attttggtcctcaaatttatatgcacggctcaatttcatcctttaatttttcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagt 236  Q
    |||||||||||||||||| ||||||||  | |||||||||| ||| |||||  |||||| |||||  | | ||||  || ||||||||||| ||||||||    
T  30783211 attttggtcctcaaatttgtatgcacgtgttaatttcatcccttacttttttgaaatagaaaatacatca-tgaaacttataaatgtcaattaatttagt 30783309  T
Q  237 ttttccgtcaagtctcatcgttaacggtgttga 269  Q
     | |||||||| ||||   ||||||||||||||    
T  30783310 ctctccgtcaaatctcgctgttaacggtgttga 30783342  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 10545021 - 10544938
Alignment:
Q  166 tcaatttcatcctttaatttttcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagtttttccgtcaagt 249  Q
    |||||||  ||||||||||| || ||||||| |||  ||  ||||||||| |||||||||||||||||||  ||||||||||||    
T  10545021 tcaattttgtcctttaatttgtcgaaatagctaattagtctttgaattttttaaatgtcaatcaatttagactttccgtcaagt 10544938  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 301
Target Start/End: Original strand, 46867220 - 46867385
Alignment:
Q  136 tattttggtcctcaaatttatatgcacggctcaatttcatcctttaatttttcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttag 235  Q
    |||||||||||| |||||| ||| ||  | | ||||| |||  | |||||||| |||||||||| | ||  || |||||| |||||||||||||||||||    
T  46867220 tattttggtccttaaatttgtatacatcggttaattttatctctcaatttttcgaaatagcaaacacgtccttaaattttataaatgtcaatcaatttag 46867319  T
Q  236 tttttccgtcaagtctcatcgttaacggtgttgacgtgtcacgttaagcgctgacgtaaagttcca 301  Q
    |   | | ||||||||   |||||||  || |||  |||||||||||||||||||||  |||||||    
T  46867320 tcccttcatcaagtcttgccgttaacaatgctgatatgtcacgttaagcgctgacgtggagttcca 46867385  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 51537063 - 51537149
Alignment:
Q  149 aaatttatatgcacggctcaatttcatcctttaatttttcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagt 236  Q
    |||||| ||||||| | |||||||||||||| ||||||  ||| |||  |||| ||| ||||||||| || |||||||||||||||||    
T  51537063 aaatttgtatgcaccgatcaatttcatccttcaattttagaaa-tagttaatacgttcttgaattttatagatgtcaatcaatttagt 51537149  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 195
Target Start/End: Complemental strand, 3428675 - 3428646
Alignment:
Q  166 tcaatttcatcctttaatttttcaaaatag 195  Q
    ||||||||||||||||||||||||||||||    
T  3428675 tcaatttcatcctttaatttttcaaaatag 3428646  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 286
Target Start/End: Complemental strand, 32838620 - 32838502
Alignment:
Q  167 caatttcatcctttaattttt-caaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctcatcgttaacggtg 265  Q
    |||||||||| || ||||||| | ||||||| |||  |||  |||||||  ||||||||||||||||||||   | |||||||||||  | ||||  |||    
T  32838620 caatttcatctttcaattttttcgaaatagctaatgcgtttctgaatttaataaatgtcaatcaatttagtcccttcgtcaagtctcgcctttaa--gtg 32838523  T
Q  266 ttgacgtgtcacgttaagcgc 286  Q
    |||| ||||||||||||||||    
T  32838522 ttgatgtgtcacgttaagcgc 32838502  T

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Target: scaffold0426 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 139 - 301
Target Start/End: Complemental strand, 4872 - 4710
Alignment:
Q  139 tttggtcctcaaatttatatgcacggctcaatttcatcctttaatttttcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagttt 238  Q
    |||||||||||||||| ||||  |   |||||||||||| | |||||||| ||||||| |||| || |||| ||||| |||||||| |||||||||||||    
T  4872 tttggtcctcaaatttgtatgtgcacgtcaatttcatccctcaatttttcgaaatagccaatacgtcattggattttataaatgtccatcaatttagttt 4773  T
Q  239 ttccgtcaagtctcatcgttaacggtgttgacgtgtcacgttaagcgctgacgtaaagttcca 301  Q
     || |||||||||| ||||||||  || | ||||||||| ||||||||| ||||  |||||||    
T  4772 gtctgtcaagtctcgtcgttaacaatgctaacgtgtcacattaagcgctaacgttgagttcca 4710  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 289
Target Start/End: Complemental strand, 7001393 - 7001241
Alignment:
Q  137 attttggtcctcaaatttatatgcacggctcaatttcatcctttaatttttcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagt 236  Q
    ||||||||| |||||||| ||||||    ||||||| |||| | |||||||  || ||||||||| |||  |||||||| ||||||| ||||||||||||    
T  7001393 attttggtcttcaaatttgtatgcatcagtcaatttgatccctaaattttttgaattagcaaatacgttcctgaattttataaatgttaatcaatttagt 7001294  T
Q  237 ttttccgtcaagtctcatcgttaacggtgttgacgtgtcacgttaagcgctga 289  Q
     | | | ||||||| || ||||||  ||||| | |||||||||||||||||||    
T  7001293 ctcttcatcaagtcccaccgttaagagtgttaatgtgtcacgttaagcgctga 7001241  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 284
Target Start/End: Complemental strand, 44867052 - 44866935
Alignment:
Q  166 tcaatttcatcctttaatttttcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctcatcgttaacggtg 265  Q
    ||||||||||| || |||||||||||||||  |||| ||   |||||||| ||||  | ||||||| ||||   |||||||||||||||| |||||||||    
T  44867052 tcaatttcatctttcaatttttcaaaatagtcaatatgtccctgaattttataaagct-aatcaatctagtccctccgtcaagtctcatccttaacggtg 44866954  T
Q  266 ttgacgtgtcacgttaagc 284  Q
    ||||||||||| |||||||    
T  44866953 ttgacgtgtcatgttaagc 44866935  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 23136663 - 23136746
Alignment:
Q  187 tcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctcatcgttaacggtgttgac 270  Q
    ||||||||||||||| ||   |||||||| ||||||||||| | |||||| |||||||||||||||||| ||||| ||| ||||    
T  23136663 tcaaaatagcaaatacgtctctgaattttataaatgtcaataagtttagtctttccgtcaagtctcatcattaacagtgatgac 23136746  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 14062584 - 14062534
Alignment:
Q  239 ttccgtcaagtctcatcgttaacggtgttgacgtgtcacgttaagcgctga 289  Q
    |||||||||||||| ||||||||  |||||||||| |||||||||| ||||    
T  14062584 ttccgtcaagtctcgtcgttaacaatgttgacgtgacacgttaagcactga 14062534  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 287
Target Start/End: Original strand, 6394876 - 6394955
Alignment:
Q  208 tgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctcatcgttaacggtgttgacgtgtcacgttaagcgct 287  Q
    |||||||| ||||||||||||||||||||  |||| ||||||||| ||||||||  ||||||||| || |||||| ||||    
T  6394876 tgaattttataaatgtcaatcaatttagtccttccatcaagtctcgtcgttaacaatgttgacgtatcccgttaaacgct 6394955  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 12659413 - 12659361
Alignment:
Q  240 tccgtcaagtctcatcgttaacggtgttgacgtgtcacgttaagcgctgacgt 292  Q
    |||||||||||||| |||||| |||| |||||||| |||||||| ||||||||    
T  12659413 tccgtcaagtctcaccgttaatggtgatgacgtgtgacgttaagtgctgacgt 12659361  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 49540132 - 49540062
Alignment:
Q  208 tgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctcatcgttaacggtgttgacgtgtcacg 278  Q
    |||||||| ||||||||||||||||||||  |||  |||||||||  ||||||| ||| ||| ||||||||    
T  49540132 tgaattttataaatgtcaatcaatttagtcattctatcaagtctcgccgttaacagtgctgatgtgtcacg 49540062  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 26778593 - 26778637
Alignment:
Q  208 tgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctc 252  Q
    |||||||| |||| ||||||||||||||| | |||||||||||||    
T  26778593 tgaattttataaacgtcaatcaatttagtctctccgtcaagtctc 26778637  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 287
Target Start/End: Complemental strand, 47304518 - 47304369
Alignment:
Q  138 ttttggtcctcaaatttatatgcacggctcaatttcatcctttaatttttcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagtt 237  Q
    |||||||||||||||||  |||||  | | |||||||||| | |||||||| ||||||| |||| ||  |||||  || ||||| ||||||| ||||||     
T  47304518 ttttggtcctcaaatttgcatgcatcggttaatttcatccctcaatttttcgaaatagccaatacgtctttgaaacttataaatatcaatcattttagtc 47304419  T
Q  238 tttccgtcaagtctcatcgttaacggtgttgacgtgtcacgttaagcgct 287  Q
      ||| ||||||||| |||||||| ||| |||  ||||| ||||||||||    
T  47304418 cctccatcaagtctcgtcgttaacagtgctgaaatgtcatgttaagcgct 47304369  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 6367617 - 6367551
Alignment:
Q  149 aaatttatatgcacggctcaatttcatcctttaatttttcaaaatagcaaataggttattgaatttt 215  Q
    |||||||||||||||| |||||||||||    ||||||||||||||| ||||||||  |||||||||    
T  6367617 aaatttatatgcacgggtcaatttcatctccgaatttttcaaaatagtaaataggtccttgaatttt 6367551  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 272
Target Start/End: Original strand, 2558330 - 2558363
Alignment:
Q  239 ttccgtcaagtctcatcgttaacggtgttgacgt 272  Q
    ||||||||||||||||||||||||||| ||||||    
T  2558330 ttccgtcaagtctcatcgttaacggtgatgacgt 2558363  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 289
Target Start/End: Complemental strand, 34151768 - 34151645
Alignment:
Q  166 tcaatttcatcctttaatttttcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctcatcgttaacggtg 265  Q
    |||||||||||| | || |||||||||| |  |||| ||| ||||||||  | ||| |||||||||||||||  ||| ||||||   ||||||||| |||    
T  34151768 tcaatttcatccctaaacttttcaaaatggacaatatgttcttgaatttgatgaatttcaatcaatttagttcctccatcaagttggatcgttaacagtg 34151669  T
Q  266 ttgacgtgtcacgttaagcgctga 289  Q
     | |||| | ||||||||||||||    
T  34151668 ataacgtataacgttaagcgctga 34151645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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