View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7113_low_4 (Length: 684)

Name: NF7113_low_4
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7113_low_4
NF7113_low_4
[»] chr5 (28 HSPs)
chr5 (122-669)||(37412501-37413048)
chr5 (1-368)||(37640561-37640928)
chr5 (1-368)||(37533789-37534156)
chr5 (1-368)||(37712313-37712680)
chr5 (1-368)||(37697476-37697843)
chr5 (1-368)||(37824584-37824951)
chr5 (3-368)||(37436396-37436761)
chr5 (1-368)||(37399916-37400283)
chr5 (1-368)||(37703357-37703724)
chr5 (1-232)||(37595149-37595380)
chr5 (1-87)||(37412418-37412504)
chr5 (1-236)||(37381439-37381674)
chr5 (78-182)||(37429616-37429720)
chr5 (1-360)||(37392065-37392421)
chr5 (448-566)||(37824386-37824504)
chr5 (448-566)||(37400363-37400481)
chr5 (597-669)||(37640240-37640312)
chr5 (484-566)||(37429223-37429305)
chr5 (448-566)||(37697278-37697396)
chr5 (597-666)||(37400532-37400601)
chr5 (597-664)||(37436080-37436147)
chr5 (467-566)||(37436198-37436297)
chr5 (278-368)||(37595013-37595103)
chr5 (597-666)||(37594695-37594764)
chr5 (467-566)||(37533591-37533690)
chr5 (467-566)||(37712115-37712214)
chr5 (597-666)||(37533471-37533540)
chr5 (474-566)||(37640363-37640455)
[»] chr3 (2 HSPs)
chr3 (1-327)||(14553768-14554094)
chr3 (570-666)||(14553481-14553577)
[»] chr4 (2 HSPs)
chr4 (1-232)||(24216844-24217075)
chr4 (4-368)||(16841983-16842347)


Alignment Details
Target: chr5 (Bit Score: 516; Significance: 0; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 122 - 669
Target Start/End: Original strand, 37412501 - 37413048
Alignment:
Q  122 accttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccatagg 221  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37412501 accttattgtaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccatagg 37412600  T
Q  222 tcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctcactcaactaacacatttggac 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37412601 tcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctcactcaactaacacatttggac 37412700  T
Q  322 ctttcatttaacaaacttaccggtgaaatctcatcattactttcaaatctcgcacatctcacttacttgcatcttgaacaaaatagctttaccggtttga 421  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  37412701 ctttcatttaacaaacttaacggtgaaatcccatcattactttcaaatctcgcacatctcacttacttggatcttgaacaaaatgcctttaccggtttga 37412800  T
Q  422 tcttgaatatgttccataagcttattaaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctca 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37412801 tcttgaatatgttccataagcttattaaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctca 37412900  T
Q  522 actttcttatttagatttatcatttaataaattagttggcccaatatccaaaattgagtattgtggatttaaataataacatgttagatggaacaaatcc 621  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  37412901 actttcttatttagatttatcatttaataaattagttggcccaatatccaaaattgagtattgtggatttaaataataaaatgttaaatggaacaaatcc 37413000  T
Q  622 tcattggtgttattatttgttttctttattagagttgtacctcagtga 669  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37413001 tcattggtgttattatttgttttctttattagagttgtacctcagtga 37413048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 37640928 - 37640561
Alignment:
Q  1 aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac 100  Q
    |||||||||||||||||| |||| |||||||||||| | || |||   ||||||||||||||  |||||||| | | |||||||||||||||||||  |     
T  37640928 aagaatttgtcatcctctttggtttctcttagtctacgaaaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagat 37640829  T
Q  101 tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg 200  Q
    | |||||||||| |||| |  |||||| |||  ||||||||| || |||||||||||||||||||||||||||| | |||  |||| ||  |||||||||    
T  37640828 tggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttgaacctccgtttatctgctttctcagg 37640729  T
Q  201 tgaaattccttattccataggtcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctc 300  Q
    |||||||||||||||||||||||| ||||||||||| |  || |||   |||  ||  ||  ||||  ||||  || |||||| |||||| |||||||||    
T  37640728 tgaaattccttattccataggtcaattgaagtctcttactcaattagtcctttcagattgcaatttagatgggatggttcctctatctttgtggaacctc 37640629  T
Q  301 actcaactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcattactttcaaa 368  Q
    || ||||||||| ||||||||||||||||||| |||||||  ||||| |||||| |||||||||||||    
T  37640628 acccaactaacatatttggacctttcatttaataaacttaatggtgagatctcaccattactttcaaa 37640561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 37534156 - 37533789
Alignment:
Q  1 aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac 100  Q
    |||||||||||||||||| |||| ||||||||||||    | |||   ||||||||||||||  |||||||| | | |||||||||||||||||||  |     
T  37534156 aagaatttgtcatcctctttggtttctcttagtctatcagaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagat 37534057  T
Q  101 tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg 200  Q
    | |||||||||||||||||  |||||| |||  ||||||||| || |||||||||||||||||||||||||||||  ||||||||  ||  ||| |||||    
T  37534056 tggatttgtcatctaatgataaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctctttctctgctttttcagg 37533957  T
Q  201 tgaaattccttattccataggtcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctc 300  Q
    |||||||||||||||||||||||| ||||||||||| |  || |||   |||  |   ||  ||||  ||||| || |||||| |||||| |||||||||    
T  37533956 tgaaattccttattccataggtcaattgaagtctcttactcaattagtcctttcattctgcaattttgatggaatggttcctctatctttgtggaacctc 37533857  T
Q  301 actcaactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcattactttcaaa 368  Q
    || ||||||||| ||||||| ||||||  ||| ||||||| |||||| |||||| |||||||||||||    
T  37533856 acccaactaacatatttggatctttcacataataaacttaacggtgagatctcaccattactttcaaa 37533789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 37712680 - 37712313
Alignment:
Q  1 aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac 100  Q
    |||||||||||||||||| |||| |||||||||||| |  |||||   |||||||||||| || |||||||| | | |||||||||||||||||||  |     
T  37712680 aagaatttgtcatcctctttggtttctcttagtctacgagacactgtgttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagat 37712581  T
Q  101 tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg 200  Q
    | |||||||||| |||| |  |||||| |||  ||||||||| || |||||||||||||||||||||||||||||  |||||||   ||  ||| |||||    
T  37712580 tggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctcttcctctgctttttcagg 37712481  T
Q  201 tgaaattccttattccataggtcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctc 300  Q
    |||||||||||||||||||||||| ||||||||||| |  || |||   |||  |   ||  ||||  ||||  || |||||| |||||| ||||| |||    
T  37712480 tgaaattccttattccataggtcaattgaagtctcttactcaattagtcctttcacattgcaattttgatgggatggttcctctatctttgtggaatctc 37712381  T
Q  301 actcaactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcattactttcaaa 368  Q
    || |||||||||||||||||||||||||| || ||||||| |||||| |||||| |||||||||||||    
T  37712380 acccaactaacacatttggacctttcattgaataaacttaacggtgagatctcaccattactttcaaa 37712313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 37697843 - 37697476
Alignment:
Q  1 aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac 100  Q
    |||||||||||||||||| |||| |||||||||||| | ||||||   |||||||||||| || |||||||| | | |||||||||||||||||||  |     
T  37697843 aagaatttgtcatcctctttggtttctcttagtctacgaaacactgtgttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagat 37697744  T
Q  101 tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg 200  Q
    | |||||||||| |||| |  |||||| |||  ||||||||| || ||||||||||||||||||||||||||| || |||||||  |||  |||||||||    
T  37697743 tggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttagacctctcttacactgctttctcagg 37697644  T
Q  201 tgaaattccttattccataggtcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctc 300  Q
    |||||||||||||||||||||||| ||||||| ||| |  |  |||    ||  |   ||  ||||  ||||  || |||||| |||||| |||||||||    
T  37697643 tgaaattccttattccataggtcaattgaagtatcttactcgattagatttttcatggtgcaattttgatgggatggttcctctatctttgtggaacctc 37697544  T
Q  301 actcaactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcattactttcaaa 368  Q
    |||||||||||| ||||||| ||||||  ||| ||||||| |||||| |||||| |||||||||||||    
T  37697543 actcaactaacatatttggatctttcaaataataaacttaacggtgagatctcaccattactttcaaa 37697476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 37824951 - 37824584
Alignment:
Q  1 aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac 100  Q
    |||||||||||||||||| |||| |||||||||||| | ||||||   |||||||||||| || |||||||| | | |||||||||||||||||||  |     
T  37824951 aagaatttgtcatcctctttggtttctcttagtctacgaaacactgtgttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagat 37824852  T
Q  101 tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg 200  Q
    | |||||||||| |||| |  |||||| |||  ||||||||| || |||||||||||||||||||||||||||||| |||||||   ||  ||| |||||    
T  37824851 tggatttgtcatttaatcataaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggacctctcttcctctgctttttcagg 37824752  T
Q  201 tgaaattccttattccataggtcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcat-ggattgattcctcaatctttatggaacct 299  Q
    |||||||||||||||||||||||| ||||||||||| |  || |||   |||  |   ||  ||||  || |||||| |||||| |||||| ||||||||    
T  37824751 tgaaattccttattccataggtcaattgaagtctcttactcaattagacctttcatattgcaattttgatgggattg-ttcctctatctttgtggaacct 37824653  T
Q  300 cactcaactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcattactttcaaa 368  Q
    ||| ||||||||| ||||||||||||||   || || |||| |||||| |||||| |||||||||||||    
T  37824652 cacccaactaacatatttggacctttcacaaaataagcttaacggtgagatctcaccattactttcaaa 37824584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 3 - 368
Target Start/End: Complemental strand, 37436761 - 37436396
Alignment:
Q  3 gaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaacta 102  Q
    |||||||||||| ||| |||| |||||||||||||    ||||   ||||||||||||||  |||||||| | | |||||||||||||||||||  | |     
T  37436761 gaatttgtcatcttctttggtttctcttagtctagcatccactcagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattg 37436662  T
Q  103 gatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtg 202  Q
    |||||||||| |||| |  |||||| |||  ||||||||| || |||||||||||||||||||||||||||| | |||  |||| ||  |||||||||||    
T  37436661 gatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttgaacctccgtttatctgctttctcaggtg 37436562  T
Q  203 aaattccttattccataggtcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctcac 302  Q
    |||||||||||||||||||||| ||||||||||| |  || |||   |||  ||  ||  ||||  ||||  || |||||| |||||| |||||||||||    
T  37436561 aaattccttattccataggtcaattgaagtctcttactcaattagaccttttaggttgcaattttgatgggatggttcctctatctttgtggaacctcac 37436462  T
Q  303 tcaactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcattactttcaaa 368  Q
    |||||||||| ||||||||||||||   || ||||||| | |||| || ||| |||||||||||||    
T  37436461 tcaactaacatatttggacctttcaagaaataaacttaacagtgagatttcaccattactttcaaa 37436396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 37399916 - 37400283
Alignment:
Q  1 aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac 100  Q
    |||||||||||||||||| |||| ||||||||||||    | |||   ||||||||||||||  |||||||| | | |||||||||||||||||||  |     
T  37399916 aagaatttgtcatcctctttggtttctcttagtctatcagaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagat 37400015  T
Q  101 tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg 200  Q
    | |||||||||| |||| |  |||||| |||  ||||||||| || |||||||||||||||||||||||||||||  |||||||   ||  ||| |||||    
T  37400016 tggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctcttcctctgctttttcagg 37400115  T
Q  201 tgaaattccttattccataggtcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctc 300  Q
    ||||||||| ||||||||||| || ||||||| ||| |  |  |||    ||  |   ||  ||||  ||||  || |||||| |||||| |||||||||    
T  37400116 tgaaattccctattccataggccaattgaagtatcttactcgattagatttttcacggtgcaatttagatgggatggttcctctatctttgtggaacctc 37400215  T
Q  301 actcaactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcattactttcaaa 368  Q
    || ||||||||| ||||||||||||||||||| ||||||| |||||| |||||| |||||||||||||    
T  37400216 acccaactaacatatttggacctttcatttaataaacttaacggtgagatctcaccattactttcaaa 37400283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 37703724 - 37703357
Alignment:
Q  1 aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac 100  Q
    |||||||||||||||||| |||| ||||||||||||    | |||   ||||||||||||||  |||||||| | | |||||||||||||||||||  |     
T  37703724 aagaatttgtcatcctctttggtttctcttagtctatcagaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagat 37703625  T
Q  101 tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg 200  Q
    | ||||||||||  ||| |  |||||| |||  |||||||||  | |||||||||| |||||||||| |||||| | |||||||   ||  ||| |||||    
T  37703624 tggatttgtcattcaattataaccttagtggtcaacttccaaaatccaactggagctctcctctaagatacttgaacctctcttcctctgctttttcagg 37703525  T
Q  201 tgaaattccttattccataggtcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctc 300  Q
    |||||||||||||||||||||||| ||||||||||| |  || |||   |||  |   ||  ||||  ||||  || |||||| |||||| ||||| |||    
T  37703524 tgaaattccttattccataggtcaattgaagtctcttactcaattagacctttcacattgcaatttagatgggatggttcctctatctttgtggaatctc 37703425  T
Q  301 actcaactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcattactttcaaa 368  Q
    || ||||||||| ||||||||||||||||||| ||||||| |||||| |||||| |||||||||||||    
T  37703424 acccaactaacatatttggacctttcatttaataaacttaacggtgagatctcaccattactttcaaa 37703357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 37595380 - 37595149
Alignment:
Q  1 aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac 100  Q
    |||||||| ||||||||| |||| ||||||  |||| | |||||| | ||||||||||||||  |||||||| | | |||||||||||||||||||  |     
T  37595380 aagaatttttcatcctctttggtttctcttcttctacgaaacactgggttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagat 37595281  T
Q  101 tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg 200  Q
    | |||||||||| ||||||  |||||| |||  ||||||||| || ||||| |||||||||||||||||||||| | |||  |||| ||  ||| |||||    
T  37595280 tggatttgtcatttaatgataaccttagtggtcaacttccaaagtccaacttgagcactcctctaaggtacttgaacctccgtttatctgctttttcagg 37595181  T
Q  201 tgaaattccttattccataggtcagttgaagt 232  Q
    |||||||||||||||||||||||| |||||||    
T  37595180 tgaaattccttattccataggtcaattgaagt 37595149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 37412418 - 37412504
Alignment:
Q  1 aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacct 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37412418 aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacattccctctttacct 37412504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 37381439 - 37381674
Alignment:
Q  1 aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac 100  Q
    |||||||||||||||||| |||| |||||| |||||||  | ||| | ||||||||||||||  |||||||| | | ||||||||||||||| |||  ||    
T  37381439 aagaatttgtcatcctctttggtttctcttggtctaggagaaactgggttgcaaggaaatttgtcaagtgacatcctctctttacctaatctccaaacac 37381538  T
Q  101 tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg 200  Q
    ||||||| ||||||||| |  | || |   |  ||||||| |  | |||||||||||||||| | ||||||||||| ||||||   ||   |||||||||    
T  37381539 tagatttatcatctaataaatatctgagcagtcaacttccgaaatccaactggagcactcctttgaggtacttggacctctctcgcacccctttctcagg 37381638  T
Q  201 tgaaattccttattccataggtcagttgaagtctct 236  Q
    ||||||||||||||||||||| ||||||||||||||    
T  37381639 tgaaattccttattccataggccagttgaagtctct 37381674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 37429720 - 37429616
Alignment:
Q  78 ctctttacctaatcttcaagaactagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggat 177  Q
    ||||||||| ||||||||||||||||||||||| | |||||||||||||| ||| ||||||||| ||| ||||||||||||||| ||||||||||||||     
T  37429720 ctctttaccaaatcttcaagaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggac 37429621  T
Q  178 ctctc 182  Q
    |||||    
T  37429620 ctctc 37429616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 37392065 - 37392421
Alignment:
Q  1 aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac 100  Q
    |||||| ||||||||||| |||| |||||||| |||||  | | | | ||||||||||||||  |||||| | | | |||||||||||||||||||  ||    
T  37392065 aagaatgtgtcatcctctttggtttctcttaggctaggagaaattgggttgcaaggaaatttgtcaagtgccatcctctctttacctaatcttcaaagac 37392164  T
Q  101 tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg 200  Q
    |||||||||||  ||||||    ||||  || ||||||||||  |  ||||||||||||||||||||||||||||| || |||   |    |||||||||    
T  37392165 tagatttgtcaaataatgaa---cttagcggtaaacttccaaaatcaaactggagcactcctctaaggtacttggacctatctggcatcactttctcagg 37392261  T
Q  201 tgaaattccttattccataggtcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctc 300  Q
    |||||||||  | || ||||| || ||||||| ||| |  || |||   |||  |   ||  ||||  ||||  || |||||| |||||| |||||||||    
T  37392262 tgaaattcccaaatctataggccatttgaagtatcttactcaattagtcctttcatattgcaatttagatgggatggttcctctatctttgtggaacctc 37392361  T
Q  301 actcaactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcatta 360  Q
    |||||||||||||||||||||||||||   || ||||||| |||||| |||||| |||||    
T  37392362 actcaactaacacatttggacctttcacaaaataaacttaacggtgagatctcaccatta 37392421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 448 - 566
Target Start/End: Complemental strand, 37824504 - 37824386
Alignment:
Q  448 aaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcattta 547  Q
    ||||| ||||||||||   |||||||||||||| | ||||| ||| |||| |||||| | || |||||| |||| |||||||||||| ||||||||| ||    
T  37824504 aaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttcttatttatatttatcatcta 37824405  T
Q  548 ataaattagttggcccaat 566  Q
    | ||| |||||||||||||    
T  37824404 acaaactagttggcccaat 37824386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 448 - 566
Target Start/End: Original strand, 37400363 - 37400481
Alignment:
Q  448 aaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcattta 547  Q
    ||||| ||||||||||   |||||||||||||| | ||||| ||| |||| |||||| | || |||||| |||| |||||| ||||| ||||||||| ||    
T  37400363 aaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttatcatcta 37400462  T
Q  548 ataaattagttggcccaat 566  Q
    | ||| |||||||||||||    
T  37400463 acaaactagttggcccaat 37400481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 597 - 669
Target Start/End: Complemental strand, 37640312 - 37640240
Alignment:
Q  597 ataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtga 669  Q
    ||||||||||| ||||||||| ||| ||||||||||||| ||||  ||| || ||||||||||||||||||||    
T  37640312 ataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttgtacctcagtga 37640240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 484 - 566
Target Start/End: Complemental strand, 37429305 - 37429223
Alignment:
Q  484 acaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 566  Q
    ||||| ||| |||| ||||||||||| |||||| |||| ||||||   ||||||||||| ||||||||||||| |||||||||    
T  37429305 acaggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaat 37429223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 448 - 566
Target Start/End: Complemental strand, 37697396 - 37697278
Alignment:
Q  448 aaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcattta 547  Q
    ||||| ||||||||||   |||||||||||||| | ||||| ||| |||| |||||| | || |||||| | || |||||| |||||| |||||||||||    
T  37697396 aaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctaccccacctttctcatttaggtttatcattta 37697297  T
Q  548 ataaattagttggcccaat 566  Q
    | ||| ||||||| |||||    
T  37697296 acaaactagttgggccaat 37697278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 597 - 666
Target Start/End: Original strand, 37400532 - 37400601
Alignment:
Q  597 ataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcag 666  Q
    ||||||||||| ||||||||| ||| ||||||||||||| ||||  ||| || |||||||||||||||||    
T  37400532 ataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttgtacctcag 37400601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 597 - 664
Target Start/End: Complemental strand, 37436147 - 37436080
Alignment:
Q  597 ataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctc 664  Q
    ||||||||||| ||||||||| ||| || |||||||||||||||  ||| || |||||||||||||||    
T  37436147 ataacatgttaaatggaacaattccacagtggtgttattatttgccttcattgttagagttgtacctc 37436080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 467 - 566
Target Start/End: Complemental strand, 37436297 - 37436198
Alignment:
Q  467 tttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 566  Q
    ||||||| |||| | | ||||| ||| |||| |||||| | || |||||| | || |||||| ||||||||||||||||||| ||| |||||||||||||    
T  37436297 tttcctccaacagcctaacaggccaagttccatcatcactttttcatctaccccacctttctcatttagatttatcatttaacaaactagttggcccaat 37436198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 278 - 368
Target Start/End: Complemental strand, 37595103 - 37595013
Alignment:
Q  278 ttcctcaatctttatggaacctcactcaactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcattactttcaaa 368  Q
    |||||| |||||| ||||||||||| ||||||||| |||||   ||||||| ||| || |||  |||||| |||||| |||||||||||||    
T  37595103 ttcctctatctttgtggaacctcacccaactaacatatttgagtctttcatataataagcttgacggtgagatctcaccattactttcaaa 37595013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 666
Target Start/End: Complemental strand, 37594764 - 37594695
Alignment:
Q  597 ataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcag 666  Q
    ||||||||||| ||||||||| ||| ||||||||||||| ||||  ||| || ||||| |||||||||||    
T  37594764 ataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagaattgtacctcag 37594695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 566
Target Start/End: Complemental strand, 37533690 - 37533591
Alignment:
Q  467 tttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 566  Q
    |||||||||||||| | ||||| ||| |||| |||||| | || |||||| |||| ||||||  ||||| |||||||| ||| ||| ||||||| |||||    
T  37533690 tttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcacctttctattttaggtttatcatataacaaactagttgggccaat 37533591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 566
Target Start/End: Complemental strand, 37712214 - 37712115
Alignment:
Q  467 tttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 566  Q
    |||||||||||||| | ||||| ||| |||| |||||| | || |||||| |||| |||||| ||||| ||||| ||  ||| ||| |||||||||||||    
T  37712214 tttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttagcagataacaaactagttggcccaat 37712115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 666
Target Start/End: Complemental strand, 37533540 - 37533471
Alignment:
Q  597 ataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcag 666  Q
    ||||||||||| ||||||||| ||| ||||||||||||| ||||  ||| || ||||||||  |||||||    
T  37533540 ataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttacacctcag 37533471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 474 - 566
Target Start/End: Complemental strand, 37640455 - 37640363
Alignment:
Q  474 taacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 566  Q
    ||||||| | ||||| ||| |||| |||||| | || |||||| |||| |||||| ||||| ||||| ||| ||| ||| |||||||||||||    
T  37640455 taacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttagcatataacaaactagttggcccaat 37640363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 14554094 - 14553768
Alignment:
Q  1 aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac 100  Q
    |||||||||||||||||| |||| |||||||||||||  |||||  | ||||||||||||||  |||||||| | | |||||| || ||||||||| |||    
T  14554094 aagaatttgtcatcctctttggtttctcttagtctagcaaacaccgggttgcaaggaaatttgtcaagtgacatactctctttgccaaatcttcaaaaac 14553995  T
Q  101 tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg 200  Q
    ||||||||  |  |||||| |  |||| |||  |||||||||  | ||||||||| |||||||||||||||||| | |||  ||   ||  |||||||||    
T  14553994 tagatttggtaggtaatgatggtcttagtggtcaacttccaaaatccaactggagtactcctctaaggtacttgtacctccattactctgctttctcagg 14553895  T
Q  201 tgaaattccttattccataggtcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctc 300  Q
    |||||||||||||||||||||||| ||||||||||| |  || |||   |||  ||  ||  ||||  ||||  || |||||| |||||| |||||||||    
T  14553894 tgaaattccttattccataggtcaattgaagtctcttactcatttagtcctttcagattgcaatttagatgggatggttcctctatctttgtggaacctc 14553795  T
Q  301 actcaactaacacatttggacctttca 327  Q
    |||||||||||||||||||||||||||    
T  14553794 actcaactaacacatttggacctttca 14553768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 570 - 666
Target Start/End: Complemental strand, 14553577 - 14553481
Alignment:
Q  570 caaaattgagtattgtggatttaaataataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcag 666  Q
    ||||||||||   ||||||||||| | ||||||||||| ||||||||| ||| ||||||||||||| ||||  ||| || |||||||| | ||||||    
T  14553577 caaaattgagctatgtggatttaagttataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttatccctcag 14553481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 6e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 24216844 - 24217075
Alignment:
Q  1 aagaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaac 100  Q
    |||||||||||||||||| |||| |||||||||||||    |||| | |||||||||||| |  |||||||| | | ||||||||| ||||||||| |||    
T  24216844 aagaatttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaagtgacatcctctctttaccaaatcttcaaaaac 24216943  T
Q  101 tagatttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcagg 200  Q
    ||||||||||||| ||| | ||||||  ||| ||| |||||| || ||||||||||||||| |||||||||||||| ||||||||  ||  |||||||||    
T  24216944 tagatttgtcatcgaatcaagaccttcgtggtaaatttccaacgtccaactggagcactcccctaaggtacttggacctctctttctctggtttctcagg 24217043  T
Q  201 tgaaattccttattccataggtcagttgaagt 232  Q
    ||||||| | || || || |||||||||||||    
T  24217044 tgaaatttcatactctattggtcagttgaagt 24217075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 4 - 368
Target Start/End: Original strand, 16841983 - 16842347
Alignment:
Q  4 aatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacgttccctctttacctaatcttcaagaactag 103  Q
    ||||||||||||||| |||| ||||||  |||||  |||||| ||||||||||||||||   ||||||| | | ||||||  | |||||||||  |||||    
T  16841983 aatttgtcatcctctttggtttctcttcatctagcaaacactggtttgcaaggaaatttgttaagtgacatactctctttgtcaaatcttcaaagactag 16842082  T
Q  104 atttgtcatctaatgaggaccttattggaaaacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtga 203  Q
    ||||||||  |||| | ||||||| |||  |||||||||  | |||||||||||||||||||||||||||| | ||||||   |||  ||||||||| ||    
T  16842083 atttgtcacataatcaagaccttagtggtcaacttccaaaatccaactggagcactcctctaaggtacttgtacctctctcatactgctttctcaggaga 16842182  T
Q  204 aattccttattccataggtcagttgaagtctctcaaccagttatcgcttaaagcatgtgatttgcatggattgattcctcaatctttatggaacctcact 303  Q
    |||  | |||||||||||||| || |||||||| |  || |||   |||  |   ||  ||||  ||||  || |||||| |||||| ||||||||||||    
T  16842183 aatctcctattccataggtcaattaaagtctcttactcatttagtcctttcattttgcaattttgatgggatggttcctctatctttgtggaacctcact 16842282  T
Q  304 caactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcattactttcaaa 368  Q
    ||||||||| ||||||| ||||||  ||| ||||||| |||||| |||||| |||||||||||||    
T  16842283 caactaacatatttggatctttcaaataataaacttaacggtgagatctcaccattactttcaaa 16842347  T

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