View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7113_low_44 (Length: 254)
Name: NF7113_low_44
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_low_44 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 44252875 - 44252989
Alignment:
| Q |
13 |
aaaatttaaggtttaaatctgatatgtagtctgtcgtaaacttattttttaaacatgaagatgacctt-aaaaagtttgatatgatttttggtgaaagga |
111 |
Q |
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| T |
44252875 |
aaaatttaaggtttaaatctgatatgtagtccgtcgtaaacttattttttaaacataaagatgaccttaaaaaagtttgatatgatttttggtgaaagga |
44252974 |
T |
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| Q |
112 |
agtttgatattgttt |
126 |
Q |
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| T |
44252975 |
agtttgatattgttt |
44252989 |
T |
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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 44252987 - 44253031
Alignment:
| Q |
154 |
tttatatatgatcatatttaaactaataatatatatgtttaaata |
198 |
Q |
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| T |
44252987 |
tttatatatgatcatatttaaactaataatatatatgtttaaata |
44253031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 35879689 - 35879735
Alignment:
| Q |
208 |
gattaaactcctttttaatatttaacatgacattttagataatttaa |
254 |
Q |
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| T |
35879689 |
gattaaactcctttttgatatttaacatgacattttagagaatttaa |
35879735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 30354274 - 30354319
Alignment:
| Q |
208 |
gattaaactcctttttaatatttaacatgacattttagataattta |
253 |
Q |
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| T |
30354274 |
gattaaacttcttttttatatttaacatgacattttagaaaattta |
30354319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 34008443 - 34008403
Alignment:
| Q |
212 |
aaactcctttttaatatttaacatgacattttagataattt |
252 |
Q |
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| T |
34008443 |
aaactcccttttaatatttaacatgacattttagagaattt |
34008403 |
T |
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