View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7113_low_45 (Length: 254)
Name: NF7113_low_45
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 44949135 - 44948932
Alignment:
| Q |
1 |
attaaggaacgcgaaatttgactcatgagtatatgcttaatatgaacaaaattgcaatttttcacaattttgtaggataattaaaacaaatagaatcttg |
100 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | || |
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| T |
44949135 |
attagggaacgcgaaatttgactcgtgagtatatgcttaatttgaacaaaattgcaatttttcacaattttgttggataattaaaacaaatagaaccgtg |
44949036 |
T |
|
| Q |
101 |
tttaaaatgctatgaaattttgcatatctttcttgtgtannnnnnnnatatgtctatgcaaattatcattttgaaattcgatttctaagtcaagatttct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
44949035 |
tttaaaatgctatgaaattttgcatatctttcttgtgtattttttttatatgtctatgcaaattatcattttaaaattcgatttctaagtcgagatttct |
44948936 |
T |
|
| Q |
201 |
atgc |
204 |
Q |
| |
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|||| |
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|
| T |
44948935 |
atgc |
44948932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 3843919 - 3843870
Alignment:
| Q |
12 |
cgaaatttgactcatgagtatatgcttaatatgaacaaaattgcaatttt |
61 |
Q |
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|||||||||| || |||||||||||||| | |||||||||||| |||||| |
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|
| T |
3843919 |
cgaaatttgagtcgtgagtatatgcttactgtgaacaaaattgtaatttt |
3843870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 15541819 - 15541710
Alignment:
| Q |
15 |
aatttgactcatgagtatatgcttaatatgaacaaaattgcaatttttcacaattttgtaggataattaaaacaaatagaatcttgtttaaaatgctatg |
114 |
Q |
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|||||||||| |||||||||||||||| ||||||||||| |||||| |||| |||||| ||| |||||||| ||||||| ||| |||||||||||||| |
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| T |
15541819 |
aatttgactcctgagtatatgcttaatgtgaacaaaattaaaattttgcacatttttgttggaaaattaaaataaatagaggcttctttaaaatgctatg |
15541720 |
T |
|
| Q |
115 |
aaattttgca |
124 |
Q |
| |
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|||| ||||| |
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| T |
15541719 |
aaatattgca |
15541710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 32540080 - 32540033
Alignment:
| Q |
14 |
aaatttgactcatgagtatatgcttaatatgaacaaaattgcaatttt |
61 |
Q |
| |
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||||||||| |||||||||||||||| || |||||||||| ||||||| |
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| T |
32540080 |
aaatttgacacatgagtatatgcttactaggaacaaaatttcaatttt |
32540033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 29351927 - 29351972
Alignment:
| Q |
15 |
aatttgactcatgagtatatgcttaatatgaacaaaattgcaattt |
60 |
Q |
| |
|
||||||||||||||||||| | ||| || ||||||||||||||||| |
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|
| T |
29351927 |
aatttgactcatgagtatacgtttactaggaacaaaattgcaattt |
29351972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 30094670 - 30094641
Alignment:
| Q |
12 |
cgaaatttgactcatgagtatatgcttaat |
41 |
Q |
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|||||||||||||||||||||||||||||| |
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|
| T |
30094670 |
cgaaatttgactcatgagtatatgcttaat |
30094641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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