View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7113_low_48 (Length: 251)
Name: NF7113_low_48
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_low_48 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 40209271 - 40209339
Alignment:
| Q |
105 |
aactttgttctttttacgagaaaaagaagtttaacccccctcaaacaacaaactaaaaaccaattaaaaa |
174 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
40209271 |
aactttgttctttttacgagaaaaaggagtttaa-ccatctcaaacaacaaactaaaaaccaattaaaaa |
40209339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 40209224 - 40209265
Alignment:
| Q |
13 |
aatattatgcaacctttttattttgattaaacgactaatttt |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40209224 |
aatattatgcaacctttttattttgattaaacgactaatttt |
40209265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 40209359 - 40209391
Alignment:
| Q |
219 |
aaatcttcaacacacaaggttttgacaatctaa |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
40209359 |
aaatcttcaacacacaaggttttgacaatctaa |
40209391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University