View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7113_low_5 (Length: 595)
Name: NF7113_low_5
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 525; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 22 - 574
Target Start/End: Complemental strand, 12794577 - 12794025
Alignment:
| Q |
22 |
aaattcttatagaatgattacaacatcttgatatattgttcatacgataaacacaaaacataaactaacgacttacaaaatcaagaatagtgtttctaca |
121 |
Q |
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||||||||||| |||||||||||||| ||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12794577 |
aaattcttataaaatgattacaacatgttgatctattgttcatacgatgaacataaaacaaaaactaacgacttacaaaatcaagaatagtgtttctaca |
12794478 |
T |
|
| Q |
122 |
accaggtctatcatctttcctcacatactccctcgcatcattctcaccatactcaaccaacccaacctcccccttcatcttccacagcttctccccaaaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12794477 |
accaggtctatcatctttcctcacatactccctcgcatcattctcaccatactcaaccaacccaacctcccccttcatcttccacagcttctccccaaaa |
12794378 |
T |
|
| Q |
222 |
cttctatgcccaaaatacccctccgcctccaccttctcccctccctccgtcacaaccaccaccggaaccctctcataaaacccacttcccacaccttcga |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12794377 |
cttctatgcccaaaatacccctccgcctccaccttctcccctccctccgtcacaaccaccaccggaaccctctcataaaacccacttcccacaccttcga |
12794278 |
T |
|
| Q |
322 |
actcatccaacttaaccacagcgtcatccgaaaccgcgtaaacttctcccttcaccttatgacccgacccgggtaggttgatcaggtacggtattccgtg |
421 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12794277 |
actcatccaacttaaccacagcgtcatccgaaaccgcgtaaacttctcccttcaccttatgacccgacccgggtaggttgatcaggtacggtattccgtg |
12794178 |
T |
|
| Q |
422 |
gggtccaatcaccagtggatacggtttctgtgtggagtatgtattcatgaaaacggcgtcgtctttggttttaagatcttccattaaaccgtggttgggg |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12794177 |
gggtccaatcaccagtggatacggtttctgtgtggagtatgtattcatgaaaacggcgtcgtctttggttttaagatcttccattaaaccgtggttgggg |
12794078 |
T |
|
| Q |
522 |
aatccttgtttcaatgttccgtatgcgaagattagatgcggtttcggtttcgc |
574 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12794077 |
aatccttgtttcaatgttccgtatgcgaagattagatgcggtttcgctttcgc |
12794025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 22 - 574
Target Start/End: Complemental strand, 12731785 - 12731235
Alignment:
| Q |
22 |
aaattcttatagaatgattacaacatcttgatatattgttcatacgataaacacaaaacataaactaacgacttacaaaatcaagaatagtgtttctaca |
121 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
12731785 |
aaattcttataaaatgattacaacatgttgatctattgttcatacgatgaacacaa--caaaaactaacgacttacaaaatcaagaatagtgtttctaca |
12731688 |
T |
|
| Q |
122 |
accaggtctatcatctttcctcacatactccctcgcatcattctcaccatactcaaccaacccaacctcccccttcatcttccacagcttctccccaaaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12731687 |
accaggtctatcatctttcctcacatactccctcgcatcattctcaccatactcaaccaacccaacctcccccttcatcttccacagcttctccccaaaa |
12731588 |
T |
|
| Q |
222 |
cttctatgcccaaaatacccctccgcctccaccttctcccctccctccgtcacaaccaccaccggaaccctctcataaaacccacttcccacaccttcga |
321 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12731587 |
cttctatgcccaaaatacccctccgcctccaccttctcccctccctccgtcacaaccaccaccggaaccctctcataaaacccacttcccacaccttcga |
12731488 |
T |
|
| Q |
322 |
actcatccaacttaaccacagcgtcatccgaaaccgcgtaaacttctcccttcaccttatgacccgacccgggtaggttgatcaggtacggtattccgtg |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12731487 |
actcatccaacttaaccacagcgtcatccgaaaccgcgtaaacttctcccttcaccttatgacccgacccgggtaggttgatcaggtacggtattccgtg |
12731388 |
T |
|
| Q |
422 |
gggtccaatcaccagtggatacggtttctgtgtggagtatgtattcatgaaaacggcgtcgtctttggttttaagatcttccattaaaccgtggttgggg |
521 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12731387 |
gggtccaatcaccagtggatacggtttctgtgtggagtatgtattcatgaaaacggcgtcgtctttggttttaagatcttccattaaaccgtggttgggg |
12731288 |
T |
|
| Q |
522 |
aatccttgtttcaatgttccgtatgcgaagattagatgcggtttcggtttcgc |
574 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12731287 |
aatccttgtttcaatgttccgtatgcgaagattagatgcggtttcgctttcgc |
12731235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 12739745 - 12739682
Alignment:
| Q |
122 |
accaggtctatcatctttcctcacatactccctcgcatcattctcaccatactcaaccaacccaa |
186 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||| ||| |||| |||||||| | |||||||| |
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| T |
12739745 |
accaggtatatcctctttcctcacatactccttcgcttcactctc-ccatactccatcaacccaa |
12739682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 12802568 - 12802505
Alignment:
| Q |
122 |
accaggtctatcatctttcctcacatactccctcgcatcattctcaccatactcaaccaacccaa |
186 |
Q |
| |
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||||||| |||| |||||||||||||||||| |||| ||| |||| |||||||| | |||||||| |
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| T |
12802568 |
accaggtatatcctctttcctcacatactccttcgcttcactctc-ccatactccatcaacccaa |
12802505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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