View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7113_low_50 (Length: 250)

Name: NF7113_low_50
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7113_low_50
NF7113_low_50
[»] chr5 (2 HSPs)
chr5 (66-197)||(25598118-25598249)
chr5 (96-202)||(33566728-33566834)
[»] chr7 (3 HSPs)
chr7 (98-196)||(20186169-20186264)
chr7 (88-196)||(10868046-10868153)
chr7 (88-196)||(10866329-10866435)
[»] chr4 (5 HSPs)
chr4 (96-196)||(15041597-15041695)
chr4 (96-196)||(15112729-15112827)
chr4 (88-196)||(16003562-16003667)
chr4 (96-196)||(15039868-15039966)
chr4 (96-196)||(15114458-15114556)
[»] chr1 (1 HSPs)
chr1 (96-209)||(17309750-17309862)
[»] scaffold0590 (1 HSPs)
scaffold0590 (96-140)||(56-100)
[»] scaffold0275 (1 HSPs)
scaffold0275 (96-140)||(3875-3919)
[»] chr8 (1 HSPs)
chr8 (100-194)||(22692461-22692554)
[»] chr6 (2 HSPs)
chr6 (96-133)||(13213973-13214010)
chr6 (100-140)||(34245058-34245098)
[»] chr3 (1 HSPs)
chr3 (96-153)||(8584497-8584554)
[»] chr2 (1 HSPs)
chr2 (89-153)||(23748602-23748666)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 66 - 197
Target Start/End: Original strand, 25598118 - 25598249
Alignment:
Q  66 aaatgattcataggagaaggtggagatgaacttcataggagaagtatgattgatagatagaaacataggaaaaactattagaattcatcatatttaattg 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||    
T  25598118 aaatgattcataggagaaggtggagatgaacttcataggagaagtatgattgataggtagaaacatagggaaaaccattagaattcatcatatttaattg 25598217  T
Q  166 tattgaaaatgattaagtaatgagtacatgga 197  Q
    |||||||||||||| |||||||||||||||||    
T  25598218 tattgaaaatgattcagtaatgagtacatgga 25598249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 33566728 - 33566834
Alignment:
Q  96 cttcataggagaagtatgattgatagatagaaacataggaaaaactattagaattcatcatatttaattgtattgaaaatgatta---agtaatgagtac 192  Q
    |||||||||||||||||||||||||   ||||| ||||| ||||| ||||||||   ||||||| ||||| |||||||| |||||   ||||||||||||    
T  33566728 cttcataggagaagtatgattgataagaagaaatatagggaaaaccattagaat---tcatattgaattgaattgaaaaagattaaagagtaatgagtac 33566824  T
Q  193 atggagggtc 202  Q
    ||||| ||||    
T  33566825 atggatggtc 33566834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 196
Target Start/End: Complemental strand, 20186264 - 20186169
Alignment:
Q  98 tcataggagaagtatgattgatagatagaaacataggaaaaactattagaattcatcatatttaattgtattgaaaatgattaagtaatgagtacatgg 196  Q
    ||||||||||||||||||||||||  ||||||||||| |||||  |||||||   ||||||| |||||||||||||| ||||||  |||||||||||||    
T  20186264 tcataggagaagtatgattgataggaagaaacatagggaaaacccttagaat---tcatattgaattgtattgaaaaagattaatgaatgagtacatgg 20186169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 10868153 - 10868046
Alignment:
Q  88 gagatgaacttcataggagaagtatgattgatagatagaaacata-ggaaaaactattagaattcatcatatttaattgtattgaaaatgatta-agtaa 185  Q
    ||||| ||||||| | ||||||||||||||||||  ||||||||| ||||||||  |||||||   ||||||| |||||||||||||| ||||| |  ||    
T  10868153 gagattaacttcagaagagaagtatgattgataggaagaaacatagggaaaaacccttagaat---tcatattgaattgtattgaaaaagattatatgaa 10868057  T
Q  186 tgagtacatgg 196  Q
    |||||||||||    
T  10868056 tgagtacatgg 10868046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 10866435 - 10866329
Alignment:
Q  88 gagatgaacttcataggagaagtatgattgatagatagaaacataggaaaaactattagaattcatcatatttaattgtattgaaaatgatta-agtaat 186  Q
    ||||| |||||||||  ||||||||||||||||   ||||||||||| |||||  |||||||   ||||||| |||||||||||||| ||||| |  |||    
T  10866435 gagattaacttcataaaagaagtatgattgatatgaagaaacatagggaaaacccttagaat---tcatattaaattgtattgaaaaagattacatgaat 10866339  T
Q  187 gagtacatgg 196  Q
    ||||||||||    
T  10866338 gagtacatgg 10866329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 15041597 - 15041695
Alignment:
Q  96 cttcataggagaagtatgattgatagatagaaacataggaaaaactattagaattcatcatatttaattgtattgaaaatgatta-agtaatgagtacat 194  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||  |||||||   ||||||| |||||||||||||| ||||| |  |||||||||||    
T  15041597 cttcataggagaagtatgattgataggaagaaacatagggaaaacccttagaat---tcatattgaattgtattgaaaaagattacatgaatgagtacat 15041693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 15112827 - 15112729
Alignment:
Q  96 cttcataggagaagtatgattgatagatagaaacataggaaaaactattagaattcatcatatttaattgtattgaaaatgatta-agtaatgagtacat 194  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||  |||||||   ||||||| |||||||||||||| ||||| |  |||||||||||    
T  15112827 cttcataggagaagtatgattgataggaagaaacatagggaaaacccttagaat---tcatattgaattgtattgaaaaagattacatgaatgagtacat 15112731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 16003667 - 16003562
Alignment:
Q  88 gagatgaacttcataggagaagtatgattgatagatagaaacataggaaaaactattagaattcatcatatttaattgtattgaaaatgattaagtaatg 187  Q
    ||||| |||||||||||| |||||| ||||||||  |||||||||||||||||| ||||||||||| |||   ||||||||| |||| |||| |  ||||    
T  16003667 gagattaacttcataggaaaagtataattgataggaagaaacataggaaaaactcttagaattcattata---aattgtatttaaaaagattgatgaatg 16003571  T
Q  188 agtacatgg 196  Q
    |||| ||||    
T  16003570 agtatatgg 16003562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 15039868 - 15039966
Alignment:
Q  96 cttcataggagaagtatgattgatagatagaaacataggaaaaactattagaattcatcatatttaattgtattgaaaatgatta-agtaatgagtacat 194  Q
    ||||||||||||||||||||||||||  ||||| ||||| |||||  |||||||   ||||| | |||||||||||||| ||||| |  |||||||||||    
T  15039868 cttcataggagaagtatgattgataggaagaaatatagggaaaacccttagaat---tcatagtgaattgtattgaaaaagattacatgaatgagtacat 15039964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 15114556 - 15114458
Alignment:
Q  96 cttcataggagaagtatgattgatagatagaaacataggaaaaactattagaattcatcatatttaattgtattgaaaatgatta-agtaatgagtacat 194  Q
    ||||||||||||||||||||||||||  ||||| ||||| |||||  |||||||   ||||| | |||||||||||||| ||||| |  |||||||||||    
T  15114556 cttcataggagaagtatgattgataggaagaaatatagggaaaacccttagaat---tcatagtgaattgtattgaaaaagattacatgaatgagtacat 15114460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 209
Target Start/End: Original strand, 17309750 - 17309862
Alignment:
Q  96 cttcataggagaagtatgattgatagatagaaacatagg--aaaaactattagaattcatcatatttaattgtattgaaaatgattaagtaatgagtaca 193  Q
    ||||||||||||||||||||| |||   ||||||||||   ||||||  |||||||||||   ||| |||||||||||||| |||||| |||||||||||    
T  17309750 cttcataggagaagtatgattcataagaagaaacatagagaaaaaacccttagaattcat---attgaattgtattgaaaaagattaattaatgagtaca 17309846  T
Q  194 tggagggtcatattta 209  Q
    |||| |||| ||||||    
T  17309847 tggatggtcttattta 17309862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 100 - 56
Alignment:
Q  96 cttcataggagaagtatgattgatagatagaaacataggaaaaac 140  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||    
T  100 cttcataggagaagtatgattgatagtaagaaacatagggaaaac 56  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 3875 - 3919
Alignment:
Q  96 cttcataggagaagtatgattgatagatagaaacataggaaaaac 140  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||    
T  3875 cttcataggagaagtatgattgatagtaagaaacatagggaaaac 3919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 194
Target Start/End: Complemental strand, 22692554 - 22692461
Alignment:
Q  100 ataggagaagtatgattgatagatagaaacataggaaaaactattagaattcatcatatttaattgtattgaaaatgatt--aagtaatgagtacat 194  Q
    ||||||||||||||||||||||  ||||||| ||  |||||  |||||||   ||||||| |||||||||||||| ||||   ||||||||||||||    
T  22692554 ataggagaagtatgattgataggaagaaacacagtgaaaacccttagaat---tcatattgaattgtattgaaaaagatttatagtaatgagtacat 22692461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 13213973 - 13214010
Alignment:
Q  96 cttcataggagaagtatgattgatagatagaaacatag 133  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  13213973 cttcataggagaagtatgattgataggaagaaacatag 13214010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 34245098 - 34245058
Alignment:
Q  100 ataggagaagtatgattgatagatagaaacataggaaaaac 140  Q
    ||||||||||||||||||||||  ||||||||||| |||||    
T  34245098 ataggagaagtatgattgataggaagaaacatagggaaaac 34245058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 8584554 - 8584497
Alignment:
Q  96 cttcataggagaagtatgattgatagatagaaacataggaaaaactattagaattcat 153  Q
    ||||||| || |||||||||||||||  ||||||||||| |||||  |||||||||||    
T  8584554 cttcataagataagtatgattgataggaagaaacatagggaaaacccttagaattcat 8584497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 23748666 - 23748602
Alignment:
Q  89 agatgaacttcataggagaagtatgattgatagatagaaacataggaaaaactattagaattcat 153  Q
    |||||| || ||||||||||||| | ||||||| | ||||||||||||||||   ||||||||||    
T  23748666 agatgagctccataggagaagtaggcttgataggttgaaacataggaaaaacccgtagaattcat 23748602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University