View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7113_low_52 (Length: 247)
Name: NF7113_low_52
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 24 - 240
Target Start/End: Original strand, 30615313 - 30615529
Alignment:
| Q |
24 |
gcgccctcgcaattatataaacctcttcaattgcattcattgtcttcggataccgaatccaaccaacggcacaaaagacatctttttggaaaagattcat |
123 |
Q |
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| T |
30615313 |
gcgccttcgcaattatataaacctcttccattgcattcattgtcttcggataccgaatccaaccaacggtacaaaagacatctttttggaaaagattcat |
30615412 |
T |
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| Q |
124 |
actatgaaatacaacatcaaggaaaaaccatgtggacattgttccaagcaaatgtacaccatgacgcgacataaattcctttgaaaaaagtccaaattgt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30615413 |
actatgaaatacaacatcaaggaaaaaccatgtggacattgttccaagcaaatgtacaccatgacgcgacataaattcctttgaaaaaagtccaaattgt |
30615512 |
T |
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| Q |
224 |
ttattttcttcgacatc |
240 |
Q |
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||||||||||| ||||| |
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| T |
30615513 |
ttattttcttcaacatc |
30615529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 24 - 234
Target Start/End: Original strand, 30620067 - 30620277
Alignment:
| Q |
24 |
gcgccctcgcaattatataaacctcttcaattgcattcattgtcttcggataccgaatccaaccaacggcacaaaagacatctttttggaaaagattcat |
123 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||| ||||| | | || |||||||||||| |||| |||| ||| ||||||||||||||| |
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| T |
30620067 |
gcgccctcgcaattttataaacctcttcaagtgcattcatcgtctttgcagacggaatccaaccaattgcactgaagatatccttttggaaaagattctg |
30620166 |
T |
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| Q |
124 |
actatgaaatacaacatcaaggaaaaaccatgtggacattgttccaagcaaatgtacaccatgacgcgacataaattcctttgaaaaaagtccaaattgt |
223 |
Q |
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||| | |||| ||| |||||| |||||||||||||| ||||||||||| ||| | ||| |||||||||||||| || || |||||||| ||||||||| |
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| T |
30620167 |
actgtaaaatgcaatatcaagcaaaaaccatgtggatgctgttccaagcagatgcaaaccgtgacgcgacataaactctttcgaaaaaagcccaaattgt |
30620266 |
T |
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| Q |
224 |
ttattttcttc |
234 |
Q |
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|| || ||||| |
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| T |
30620267 |
ttcttctcttc |
30620277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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