View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7113_low_57 (Length: 239)

Name: NF7113_low_57
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7113_low_57
NF7113_low_57
[»] chr5 (6 HSPs)
chr5 (1-212)||(7840486-7840696)
chr5 (152-209)||(43222189-43222245)
chr5 (155-209)||(9465806-9465859)
chr5 (5-46)||(31683433-31683474)
chr5 (6-50)||(14532598-14532642)
chr5 (153-209)||(14733617-14733672)
[»] chr7 (4 HSPs)
chr7 (155-209)||(27386897-27386950)
chr7 (5-46)||(41650798-41650839)
chr7 (153-205)||(31322032-31322083)
chr7 (153-209)||(37134384-37134439)
[»] chr8 (2 HSPs)
chr8 (5-53)||(39211134-39211182)
chr8 (5-53)||(4312641-4312689)
[»] chr3 (5 HSPs)
chr3 (153-209)||(36011001-36011056)
chr3 (14-53)||(10811237-10811276)
chr3 (6-53)||(48346920-48346967)
chr3 (152-209)||(43624332-43624388)
chr3 (5-53)||(9753311-9753359)
[»] chr1 (2 HSPs)
chr1 (1-53)||(47990260-47990312)
chr1 (5-45)||(611574-611614)
[»] chr2 (1 HSPs)
chr2 (1-50)||(4228869-4228918)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 7840696 - 7840486
Alignment:
Q  1 attattttggttattgtgtcaatactcatttttctttgaatatttaggttgtcaacaaaaatagctattcaaataacattcatctaaatttgtgaccacg 100  Q
    ||||||||| || |||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7840696 attattttgatttttgtgtca-tactcatttttctttgtatatttaggttgtcaacaaaaataactattcaaataacattcatctaaatttgtgaccacg 7840598  T
Q  101 gtcacaagactgatacgttcaatatgttacacgattttgtaatttaatgtgcgagttgaaatcctctacatttataaaatataaatggagattgttatta 200  Q
     |||||||  ||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  7840597 atcacaaggttgatacgttcaatatgttatacgattttgtaatttaatgtgcaagttgagatcctcttcatttataaaatataaatggagattgttatta 7840498  T
Q  201 tgaaagagagac 212  Q
    ||||||||||||    
T  7840497 tgaaagagagac 7840486  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 43222245 - 43222189
Alignment:
Q  152 cgagttgaaatcctctacatttataaaatataaatggagattgttattatgaaagaga 209  Q
    |||||||| || |||| ||||||||||| ||||||||||||||| |||||||||||||    
T  43222245 cgagttgagatactctccatttataaaa-ataaatggagattgtcattatgaaagaga 43222189  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 9465859 - 9465806
Alignment:
Q  155 gttgaaatcctctacatttataaaatataaatggagattgttattatgaaagaga 209  Q
    ||||| ||||||| ||||||||||| ||||||||||||||  |||||||||||||    
T  9465859 gttgagatcctcttcatttataaaa-ataaatggagattgccattatgaaagaga 9465806  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 31683474 - 31683433
Alignment:
Q  5 ttttggttattgtgtcaatactcatttttctttgaatattta 46  Q
    |||||||| |||||||||||||||| |||||||| |||||||    
T  31683474 ttttggtttttgtgtcaatactcatatttctttgtatattta 31683433  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 14532598 - 14532642
Alignment:
Q  6 tttggttattgtgtcaatactcatttttctttgaatatttaggtt 50  Q
    ||||||| ||||||||||| |||| |||||||| |||||||||||    
T  14532598 tttggttcttgtgtcaatattcatatttctttgtatatttaggtt 14532642  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 14733672 - 14733617
Alignment:
Q  153 gagttgaaatcctctacatttataaaatataaatggagattgttattatgaaagaga 209  Q
    ||||||| ||||||| ||||||||||| ||||||| ||||||| |||| ||||||||    
T  14733672 gagttgagatcctctccatttataaaa-ataaatgaagattgtcattaggaaagaga 14733617  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 27386897 - 27386950
Alignment:
Q  155 gttgaaatcctctacatttataaaatataaatggagattgttattatgaaagaga 209  Q
    ||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  27386897 gttgagatcctctccatttataaaa-ataaatggagattgttattatgaaagaga 27386950  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 41650798 - 41650839
Alignment:
Q  5 ttttggttattgtgtcaatactcatttttctttgaatattta 46  Q
    |||||||| |||||||||||||||| |||||||| |||||||    
T  41650798 ttttggtttttgtgtcaatactcatgtttctttgtatattta 41650839  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 31322032 - 31322083
Alignment:
Q  153 gagttgaaatcctctacatttataaaatataaatggagattgttattatgaaa 205  Q
    ||||||| ||||||| ||||||||||| ||||||| ||||||| |||||||||    
T  31322032 gagttgagatcctctccatttataaaa-ataaatgaagattgtcattatgaaa 31322083  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 37134439 - 37134384
Alignment:
Q  153 gagttgaaatcctctacatttataaaatataaatggagattgttattatgaaagaga 209  Q
    ||||||| ||||||| ||||||||||| ||||| ||||||||| ||||||| |||||    
T  37134439 gagttgagatcctctccatttataaaa-ataaacggagattgtcattatgatagaga 37134384  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 39211134 - 39211182
Alignment:
Q  5 ttttggttattgtgtcaatactcatttttctttgaatatttaggttgtc 53  Q
    |||||||| |||||||||||||||| |||||||| |||||||| |||||    
T  39211134 ttttggtttttgtgtcaatactcatatttctttgtatatttagattgtc 39211182  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 4312641 - 4312689
Alignment:
Q  5 ttttggttattgtgtcaatactcatttttctttgaatatttaggttgtc 53  Q
    ||||| || |||||||||||||||| ||||||||  |||||||||||||    
T  4312641 ttttgatttttgtgtcaatactcatatttctttgtgtatttaggttgtc 4312689  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 36011056 - 36011001
Alignment:
Q  153 gagttgaaatcctctacatttataaaatataaatggagattgttattatgaaagaga 209  Q
    ||||||| |||||||  |||||||||| ||||||||||||||| |||||||||||||    
T  36011056 gagttgagatcctctcaatttataaaa-ataaatggagattgtaattatgaaagaga 36011001  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 10811237 - 10811276
Alignment:
Q  14 ttgtgtcaatactcatttttctttgaatatttaggttgtc 53  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  10811237 ttgtgtcaatactcatatttctttgtatatttaggttgtc 10811276  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 48346920 - 48346967
Alignment:
Q  6 tttggttattgtgtcaatactcatttttctttgaatatttaggttgtc 53  Q
    ||||||| ||||||||||| |||| |||||||| ||||||||||||||    
T  48346920 tttggtttttgtgtcaatattcatatttctttgtatatttaggttgtc 48346967  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 43624332 - 43624388
Alignment:
Q  152 cgagttgaaatcctctacatttataaaatataaatggagattgttattatgaaagaga 209  Q
    |||||||| |||||||  |||||||||| ||||||||||||||| ||||| |||||||    
T  43624332 cgagttgagatcctctctatttataaaa-ataaatggagattgtcattataaaagaga 43624388  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 9753311 - 9753359
Alignment:
Q  5 ttttggttattgtgtcaatactcatttttctttgaatatttaggttgtc 53  Q
    |||||||| ||||||||| |||||| | |||||| ||||||||||||||    
T  9753311 ttttggtttttgtgtcaacactcatatatctttgtatatttaggttgtc 9753359  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 47990312 - 47990260
Alignment:
Q  1 attattttggttattgtgtcaatactcatttttctttgaatatttaggttgtc 53  Q
    ||||||||| || |||||||||||||||| |||||||| |||||| |||||||    
T  47990312 attattttgatttttgtgtcaatactcatatttctttgtatattttggttgtc 47990260  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 611614 - 611574
Alignment:
Q  5 ttttggttattgtgtcaatactcatttttctttgaatattt 45  Q
    |||||||| |||||||||||||||| |||||||| ||||||    
T  611614 ttttggtttttgtgtcaatactcatatttctttgtatattt 611574  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4228918 - 4228869
Alignment:
Q  1 attattttggttattgtgtcaatactcatttttctttgaatatttaggtt 50  Q
    |||| ||| ||| |||||||||||||||| |||||||| |||||||||||    
T  4228918 attactttagtttttgtgtcaatactcatatttctttgtatatttaggtt 4228869  T

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