View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7113_low_6 (Length: 578)
Name: NF7113_low_6
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 8e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 360 - 564
Target Start/End: Original strand, 3151511 - 3151715
Alignment:
| Q |
360 |
ttttaggaagcgacacaacacgcaaatatcaactatgacgtaatagggaaaacattgtatttattttgcttattttaagatctcgtattagattaattat |
459 |
Q |
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| T |
3151511 |
ttttaggaagcgatacaacacgcaaatatcaactatgacgcaatagggaaaacattgtatttattttgcttattttaagatctcgtattagattaattat |
3151610 |
T |
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| Q |
460 |
atttctaccattattgtgaagttttcgtttaacctaaaatacctcgattagannnnnnnnnacaccaaattatggtcaaaacagtgccatattggtatag |
559 |
Q |
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| T |
3151611 |
atttctaccattattgtgaagttttcgtttaacctaaaatacctcaattagatttttttttaccccaaattatggtcaaaacagtgccataatggtatag |
3151710 |
T |
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| Q |
560 |
ttgtt |
564 |
Q |
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| T |
3151711 |
ttgtt |
3151715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 3151238 - 3151387
Alignment:
| Q |
4 |
atagaaaatgatat-cacaacggcaaaggcattaactgaatcgaatgattgactaaatcgtaaattaaaatggtttacgatttagttatttaagttactt |
102 |
Q |
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| T |
3151238 |
atagaaaattatattcataaaggcaaaggcataaactgaatcaaatggttgactaaatcgtaaattaaaatggtttacgatttagttatttaagttactt |
3151337 |
T |
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| Q |
103 |
tgattgcatcttcagtttaaaacactcaaacgaagatttttcgatttgat |
152 |
Q |
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| T |
3151338 |
tgattgcattttcggtttaaaatacttaaactaagatttttcgatttgat |
3151387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 202 - 325
Target Start/End: Original strand, 3151390 - 3151513
Alignment:
| Q |
202 |
ttttttaaatcatattgattagatttcatatttttctctttatctttaaggattaaattagactaacgtttcttcgttaatagcatagttagtaatttgt |
301 |
Q |
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| T |
3151390 |
tttttcaaatcatattaatttgatttcatatttttctctgtatctttaaggattaaattagactaacatttcttcattaatagcgtagttaataattcgt |
3151489 |
T |
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| Q |
302 |
cttatttttaattgacttagattt |
325 |
Q |
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| T |
3151490 |
cttatttttaattgacttaaattt |
3151513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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