View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7113_low_61 (Length: 228)
Name: NF7113_low_61
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_low_61 |
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| [»] chr7 (4 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 33428402 - 33428624
Alignment:
| Q |
6 |
acttaggaagctttatattgtttttaatacaagagtttgtgttaacctcttggcaannnnnnnaattaatgatgtttctttattttaatgatattgtaat |
105 |
Q |
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| T |
33428402 |
acttaggaagctttatattgtttttaatacaagagtttgtgttaacctcttggcaatttttttaattaatgatgtttctttattttaatgatattgtaat |
33428501 |
T |
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| Q |
106 |
tagatcttcaattttatatttccttatgctttaacttgttcttgannnnnnnnatttgaaatttttgcatctgtcacaagaattgtacttcaaaaaggtc |
205 |
Q |
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| T |
33428502 |
tagatcttcaattttatatttccttatgctttaacttgttcttgattttttttatttgaaatttttgcatctgtcacaagaattgtacttcaaaaaggtc |
33428601 |
T |
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| Q |
206 |
cttgacaggtttggaatgttaaa |
228 |
Q |
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| T |
33428602 |
cttgacaggtttggaatgttaaa |
33428624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 33416130 - 33416075
Alignment:
| Q |
6 |
acttaggaagctttatattgtttttaatacaagagtttgtgttaacctcttggcaa |
61 |
Q |
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| T |
33416130 |
acttaggaagttttatattgttattaatacagaagtttgtgttaacctcttggcaa |
33416075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 33410281 - 33410226
Alignment:
| Q |
6 |
acttaggaagctttatattgtttttaatacaagagtttgtgttaacctcttggcaa |
61 |
Q |
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| T |
33410281 |
acttaggaagctttatattgttattaatacaagtatttgtgttaatcttttggcaa |
33410226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 33424183 - 33424128
Alignment:
| Q |
6 |
acttaggaagctttatattgtttttaatacaagagtttgtgttaacctcttggcaa |
61 |
Q |
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| T |
33424183 |
acttaggaagctttatattgttattaatacaagtatttgtgttaatcttttggcaa |
33424128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 17790880 - 17790949
Alignment:
| Q |
159 |
atttgaaatttttgcatctgtcacaagaattgtacttcaaaaaggtccttgacaggtttggaatgttaaa |
228 |
Q |
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| T |
17790880 |
atttgaaaattttgcatctgtcacaagagttgtacttcaaaaaggtccttgacaggtttggaatgttaaa |
17790949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 27529475 - 27529521
Alignment:
| Q |
182 |
caagaattgtacttcaaaaaggtccttgacaggtttggaatgttaaa |
228 |
Q |
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| T |
27529475 |
caagagttgcacttcaaaaaggtccttgacaggtttgaaatgttaaa |
27529521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 33416432 - 33416466
Alignment:
| Q |
194 |
ttcaaaaaggtccttgacaggtttggaatgttaaa |
228 |
Q |
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| T |
33416432 |
ttcaaaaaggtccttgacaggtttgtaatgttaaa |
33416466 |
T |
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