View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7113_low_63 (Length: 223)
Name: NF7113_low_63
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 44 - 209
Target Start/End: Complemental strand, 39336416 - 39336249
Alignment:
| Q |
44 |
atggaactgaacatagggagtcgatacaaactaaaatagagtagaaacataccaatgcagcaagatccgcgccactaaagttttcacaatcttccattct |
143 |
Q |
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| T |
39336416 |
atggaaccgaacatagggagtcgatacaaactaaaatagagtagaaacataccaatgcagcaagatccgcgccactaaagttttcacaatcttccattct |
39336317 |
T |
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| Q |
144 |
tgcaatg--agactcaaatccacgctggcatcaatacgtctaccctttgcaagagttttcaatatttt |
209 |
Q |
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| T |
39336316 |
tgcaatgacacactcaaatccacgctggcatcaatatgtctaccctttgcaagagttttcaatatttt |
39336249 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 7295429 - 7295508
Alignment:
| Q |
94 |
accaatgcagcaagatccgcgccactaaagttttcacaatcttccattcttgcaatgagactcaaatccacgctggcatc |
173 |
Q |
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| T |
7295429 |
accaatgcagcaagatcagcaccattaaagtttttacaagctttcattcttgcaatgtcgctcaaatccacactggcatc |
7295508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 7304663 - 7304746
Alignment:
| Q |
94 |
accaatgcagcaagatccgcgccactaaagttttcacaatcttccattcttgcaatgagactcaaatccacgctggcatcaata |
177 |
Q |
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| T |
7304663 |
accaatgcagcaagatcggcaccactatagttttcacaggctttcgatcttccaatggcgctcaaatccacactggcatcaata |
7304746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 206
Target Start/End: Complemental strand, 791004 - 790882
Alignment:
| Q |
84 |
gtagaaacataccaatgcagcaagatccgcgccactaaagttttcacaatcttccattcttgcaatgagactcaaatccacgctggcatcaatacgtcta |
183 |
Q |
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|||||||||||||||| |||||||||| || || |||| ||||||||| | ||||||||| ||||| |||||||| || || | ||||||| || || |
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| T |
791004 |
gtagaaacataccaattcagcaagatcagcaccgctaaggttttcacatgcatccattcttccaatggcgctcaaatctacactagaatcaatatgttta |
790905 |
T |
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| Q |
184 |
ccctttgcaagagttttcaatat |
206 |
Q |
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| T |
790904 |
ttccttgcaagagctttcaatat |
790882 |
T |
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