View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7113_low_7 (Length: 539)
Name: NF7113_low_7
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 207 - 527
Target Start/End: Original strand, 41664287 - 41664607
Alignment:
| Q |
207 |
ttttatcttactacgatgttcattagtttaaattgacatattcacttaaactcattacaaatttgatgaagacttgagcgtcaaagttggagatctgaaa |
306 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41664287 |
ttttatcttagtacgatgttcattagttcaaattgacatattcacttaaactcattacaaatttgatgaagacttgagcgtcaaagttggagatctgaaa |
41664386 |
T |
|
| Q |
307 |
acatgaatattcatgtcgcttttattgtcatatttgtgggcattatcataattactaaaacttcaaagagacgaataatccggttagacgacatattatt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41664387 |
acatgaatattcatgtcgcttttattgtcatatttgtgggcattatcataattgctcaaacttcaaagagacgaataatccggttagacgacatattatt |
41664486 |
T |
|
| Q |
407 |
gctcacatagatcagaattgctaggcgaattatggtctgattgaagacaatattcacttatttatccattgcgacttttttggtagaatttggcctatta |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41664487 |
gctcacatagatcagaattgctaggcgaattatggtatgattgaagacaatattcacttatttatccattgcgacttttttggtagaatttggcctatta |
41664586 |
T |
|
| Q |
507 |
tttacggttggttgggatttt |
527 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
41664587 |
tttacggttggttgggatttt |
41664607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 41664087 - 41664169
Alignment:
| Q |
18 |
gtttttggcctgaaatcacccctcaacaccgtttctttttctctttttatttaaataagtggttatccatgtatatctgcttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41664087 |
gtttttggcctgaaatcacccctcaacaccgtttctttttctctttttatttaaataagtggttatccatgtatatctgcttc |
41664169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 12125296 - 12125343
Alignment:
| Q |
39 |
ctcaacaccgtttctttttctctttttatttaaataagtggttatcca |
86 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
12125296 |
ctcaacaccgcttctttctctctttttatttaaataagttgttatcca |
12125343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 317
Target Start/End: Original strand, 12125459 - 12125546
Alignment:
| Q |
230 |
tagtttaaattgacatattcacttaaactcattacaaatttgatgaagacttgagcgtcaaagttggagatctgaaaacatgaatatt |
317 |
Q |
| |
|
||||||| |||||||||||||||| ||| |||||| || ||||||| ||||||||||||| ||| ||||| ||| |||| |||||| |
|
|
| T |
12125459 |
tagtttatattgacatattcacttccactaattacatatatgatgaacacttgagcgtcaatgttaaagatccgaacacataaatatt |
12125546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 446 - 519
Target Start/End: Original strand, 25523104 - 25523177
Alignment:
| Q |
446 |
attgaagacaatattcacttatttatccattgcgacttttttggtagaatttggcctattatttacggttggtt |
519 |
Q |
| |
|
||||||||||||| ||| |||||| |||| || ||||||| | || ||||||| |||||||||||||| ||||| |
|
|
| T |
25523104 |
attgaagacaataatcatttatttttccaatgtgacttttattgtcgaatttgacctattatttacggctggtt |
25523177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 44527217 - 44527160
Alignment:
| Q |
260 |
attacaaatttgatgaagacttgagcgtcaaagttggagatctgaaaacatgaatatt |
317 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||| | ||| |||| ||||||||| |
|
|
| T |
44527217 |
attacaaatttgataaagacttgagcgtcaatgttgcaaatccgaaagtatgaatatt |
44527160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 295
Target Start/End: Original strand, 37806250 - 37806327
Alignment:
| Q |
218 |
tacgatgttcattagtttaaattgacatattcacttaaactcattacaaatttgatgaagacttgagcgtcaaagttg |
295 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||| || ||||| ||||| |||| |||||||||| || ||||| |||| |
|
|
| T |
37806250 |
tacggtgttcattgatttagattgacatattcatttcaactcgttacagatttaatgaagacttaagtgtcaatgttg |
37806327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University