View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7113_low_8 (Length: 527)
Name: NF7113_low_8
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 67 - 464
Target Start/End: Complemental strand, 410530 - 410133
Alignment:
| Q |
67 |
ttgacctgagcaacaattccactatcaagagctttgactaaagcatcttcatcaataacaccacctctagcaacattgatgattctcacacccttcttca |
166 |
Q |
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| T |
410530 |
ttgacctgagcaacaattccactatcaagagctttgactaaagcatcttcatcaataacaccacctctagcaacattgatgattctcacaccattcttca |
410431 |
T |
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| Q |
167 |
tcttagcaaaagtgttttcattgaagaccttgttagtagttggagtgagaggcatgtgaagtgagatgaaatcagcggttgtgattgcttgatcaaatga |
266 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
410430 |
tcttagcaaaagtgttgtcattgaagactttgttagtagttggagtgagaggcatgtgaagtgagatgaaatcagcggttgtgattgcttgatcaaatga |
410331 |
T |
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| Q |
267 |
gactaattccacaccaacagcacgtgctctatcagctggagcataagggtcatgagcaatcacattcattcctaatccttttgcacgccttgcaacttca |
366 |
Q |
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| T |
410330 |
aactaattccacaccaacagcacgtgctctatcagctggagcataagggtcatgagcaatcacattcattcctaatccttttgcacgccttgcaacttca |
410231 |
T |
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| Q |
367 |
gatccaacttttccaaatcccattattgctaatgttttcccaaccatagatactcccacatacttgcttcttagccattttcctgcaaaaattatcaa |
464 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
410230 |
gatccaacttttccaaaccccattattgctaatgttttcccaaccatagatactccaacatacttgcttctcagccattttcctgcaaaaattatcaa |
410133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 437
Target Start/End: Complemental strand, 48785548 - 48785408
Alignment:
| Q |
297 |
atcagctggagcataagggtcatgagcaatcacattcattcctaatccttttgcacgccttgcaacttcagatccaacttttccaaatcccattattgct |
396 |
Q |
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|||||| ||||||||||| ||||||||||| || ||||| || | || || |||||||| ||||| |||| |||||| || ||||||||||||| || |
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| T |
48785548 |
atcagcaggagcataaggatcatgagcaataaccttcataccaagccccttagcacgcctagcaacctcagttccaaccttcccaaatcccattacagca |
48785449 |
T |
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| Q |
397 |
aatgttttcccaaccatagatactcccacatacttgcttct |
437 |
Q |
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| T |
48785448 |
agtgtcttcccaactagggaaactccaacatacttacttct |
48785408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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