View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7113_low_9 (Length: 520)
Name: NF7113_low_9
Description: NF7113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7113_low_9 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 278 - 520
Target Start/End: Original strand, 35443538 - 35443769
Alignment:
| Q |
278 |
ataaaattatatattcaaggtacaaaatcaaattatttgactttttgaataaataacatttttatttagatattataattcacagtttgacattttagat |
377 |
Q |
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| T |
35443538 |
ataaaattatatattcaatgtacaaaatcaaattatttaactttttgaataaataacatttttatttagatattctaattcacagtttgactttttagat |
35443637 |
T |
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| Q |
378 |
ttattagataattgatgtatctaatctgaaatatatgtcaaatatatgtcagatacatcaattatttaatgaatttaaaattttaattgttttttgtcat |
477 |
Q |
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| T |
35443638 |
ttattagataattgatgtatctagtctg-----------aaatatatgtcagatacatcaattatttaatgaatttaaaattttaattgttttttgtcct |
35443726 |
T |
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| Q |
478 |
taagacgtgacagaaaactatacaagaagaaaaatagatttga |
520 |
Q |
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| T |
35443727 |
taagacctgacagaaaactatacaagaagaaaaatagatttga |
35443769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 35443275 - 35443393
Alignment:
| Q |
1 |
aacaatgagtgaagtgtatcatatcattagagagaggtcaattaattacctggtcaacatcttgacgagtaataagagtatgcattgcggatccacttga |
100 |
Q |
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| T |
35443275 |
aacaatgagtgaagtgtatcatatcattagagagaggtcaattaattacctggtcaacatcttgacgagtaataagagtatgcattgcggatccacttga |
35443374 |
T |
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| Q |
101 |
cgtatcgcaaatattagag |
119 |
Q |
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| T |
35443375 |
cgtatcgcaaatattagag |
35443393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 469
Target Start/End: Original strand, 35922124 - 35922163
Alignment:
| Q |
430 |
atacatcaattatttaatgaatttaaaattttaattgttt |
469 |
Q |
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| T |
35922124 |
atacatcaattatttaatgaatttaaaaattcaattgttt |
35922163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 397
Target Start/End: Original strand, 6500011 - 6500044
Alignment:
| Q |
364 |
ttgacattttagatttattagataattgatgtat |
397 |
Q |
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| T |
6500011 |
ttgacattttagatttattaaataattgatgtat |
6500044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 458
Target Start/End: Complemental strand, 26863168 - 26863129
Alignment:
| Q |
419 |
atatatgtcagatacatcaattatttaatgaatttaaaat |
458 |
Q |
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| T |
26863168 |
atatatatcagatacatcaattattcaatgaatttaaaat |
26863129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 457
Target Start/End: Original strand, 12018490 - 12018527
Alignment:
| Q |
420 |
tatatgtcagatacatcaattatttaatgaatttaaaa |
457 |
Q |
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| T |
12018490 |
tatatttcagatacatcaattatttaatgaatctaaaa |
12018527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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