View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7114_high_3 (Length: 454)

Name: NF7114_high_3
Description: NF7114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7114_high_3
NF7114_high_3
[»] chr3 (3 HSPs)
chr3 (13-436)||(52712390-52712813)
chr3 (13-435)||(52721212-52721634)
chr3 (13-436)||(52698571-52698994)


Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 13 - 436
Target Start/End: Complemental strand, 52712813 - 52712390
Alignment:
Q  13 aatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaaga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52712813 aatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaaga 52712714  T
Q  113 aacctagtaaaagggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataaaaccgtagttattgtgggaattc 212  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  52712713 aacctagtaaaagggcttcccattggcttttggaaacggtaataccgaacaccggcagctagaacaacgatagataaaaccgtagttattgtgggaattc 52712614  T
Q  213 caaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaattaaagaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52712613 caaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaattaaagaa 52712514  T
Q  313 agcgtatttcttttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggtttgattcctccggtacctaaggcaatg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52712513 agcgtatttcttttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggtttgattcctccggtacctaaggcaatg 52712414  T
Q  413 agaccaagtgcaccgtacaagaat 436  Q
    ||||||||||||||||||||||||    
T  52712413 agaccaagtgcaccgtacaagaat 52712390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 13 - 435
Target Start/End: Complemental strand, 52721634 - 52721212
Alignment:
Q  13 aatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaaga 112  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||    
T  52721634 aatatcagagtgtgtggtctcaacctcatagagagtaggttcattttctacggaaactccttttcgatgtttcttgacggaggctacaataacctgaaga 52721535  T
Q  113 aacctagtaaaagggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataaaaccgtagttattgtgggaattc 212  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| ||| |||||||||||| ||||||||||||| ||||    
T  52721534 aacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtgggtattc 52721435  T
Q  213 caaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaattaaagaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52721434 caaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccatgttgatagcaaagaaaaaccaattaaagaa 52721335  T
Q  313 agcgtatttcttttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggtttgattcctccggtacctaaggcaatg 412  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||     
T  52721334 agcgtatttctgttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggcttgattcctcctgtacccaaagcaata 52721235  T
Q  413 agaccaagtgcaccgtacaagaa 435  Q
    || ||||||||||||||||||||    
T  52721234 aggccaagtgcaccgtacaagaa 52721212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 13 - 436
Target Start/End: Complemental strand, 52698994 - 52698571
Alignment:
Q  13 aatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaaga 112  Q
    ||||||||||| |||||| |||||||| ||||||| ||  ||||||||||| |||||||||| | |||||||||| |  || ||||||||||||||||||    
T  52698994 aatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaaga 52698895  T
Q  113 aacctagtaaaagggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataaaaccgtagttattgtgggaattc 212  Q
    |||||||| || |||||||||||||  ||||| ||||| |||||| ||| |||  | || |  | ||| ||||||| || ||||||||||||||| | |     
T  52698894 aacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatg 52698795  T
Q  213 caaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaattaaagaa 312  Q
    |||||||||||| |||||||| ||  | ||||  |||||||||||  || ||||||||||| |||||||||||||| |||||| ||||||||||||||||    
T  52698794 caaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaagaa 52698695  T
Q  313 agcgtatttcttttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggtttgattcctccggtacctaaggcaatg 412  Q
    || | ||||| |||||||||||||||||||||||||||||||||| || |||||||| || || |||||||||||||||||||| ||||| |||||||||    
T  52698694 agagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaatgaggaaacacaaggtttgattcctccagtacccaaggcaatg 52698595  T
Q  413 agaccaagtgcaccgtacaagaat 436  Q
    || ||||||||||  |||||||||    
T  52698594 aggccaagtgcactatacaagaat 52698571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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