View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7114_low_1 (Length: 647)
Name: NF7114_low_1
Description: NF7114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7114_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 317 - 631
Target Start/End: Complemental strand, 2999111 - 2998797
Alignment:
| Q |
317 |
tttttattaactcaaatatatgttacaacttacaaataggagccaaattagttttaatcatttacatatccaaaatcacgataattgagtggatatgatc |
416 |
Q |
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| T |
2999111 |
tttttattaacttaaatatatgttacaacttacaaataggagccaaattagttttaatcatttacatatccaaaatcacgataattgagtggatatgatc |
2999012 |
T |
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| Q |
417 |
aacttatagaagtaaaactcaaaactacatttcatttcatgtgagccaaccagtcctgaaaattggataagaacttcaggttcaagacaagacagacaga |
516 |
Q |
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| T |
2999011 |
aacttatagaagtaaaactcaaaactacatttcatttcatgtgagccaaccagtcctgaaaattggataagaacttcaggttcaagacaagacagacaga |
2998912 |
T |
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| Q |
517 |
caaccaaagtgaatcatcacatgccagctatgtagcacacatatttagattagacgtgtttcactgccgaacacgtatcatgttcaaaactgacacatgt |
616 |
Q |
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| T |
2998911 |
caaccaaagtgaatcatcacatgccagctatgtagcacacatatttagattagacatgttttactgccgaacacgtatcatgttcaaaactgacacacgt |
2998812 |
T |
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| Q |
617 |
atcatgtctgaaact |
631 |
Q |
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| T |
2998811 |
atcatgtctgaaact |
2998797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 48 - 325
Target Start/End: Complemental strand, 2999574 - 2999296
Alignment:
| Q |
48 |
gtctgaagtctttaacctgagtctaagaaaaatggtccgataatccaaagtttgataaagtggtaattataatgtgtgattagggattgttcaattagaa |
147 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |
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| T |
2999574 |
gtctgaagtctttaacccgagtctaagaaaaatggtctgataatccaaagtttgataaagtggtaattatattgtgcgattagggattgttcaattataa |
2999475 |
T |
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| Q |
148 |
ctcaaattcatgtttttcaaacaattcatttttaactacatcttatcaat-gtttgagtttaatcacttaatcatatttactctaatactttatatgatg |
246 |
Q |
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|| |||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2999474 |
cttaaattcatgtttttcaaaaaattcaattttaactacatcttatcaatcgtttgagtttaatcatttaatcatatttactctaatactttatatgatg |
2999375 |
T |
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| Q |
247 |
atctcatttttaaaaaacaattgatcttgaaaagnnnnnnnnnnnncagacatttgaaactcaaaatcaatttttatta |
325 |
Q |
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| T |
2999374 |
atctcatttttaagaaacaattgatcttgcaaaaaaaaaaaaaaaacagacatttgaaactcaaaatcaatttttatta |
2999296 |
T |
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