View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7114_low_2 (Length: 605)
Name: NF7114_low_2
Description: NF7114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7114_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Complemental strand, 3320978 - 3320389
Alignment:
| Q |
1 |
ttgtcaaaggttaaccttctaaaaacatcttgcaaatctacttgcaatccttttttacaagcattatcaagaaacaaaaggagacaactatcaannnnnn |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3320978 |
ttgtcaaaggttaaccttctaaaaacatcttgcaaatctacttgcaatccttttttacaagcattatcaagaaacaaaaggagacaactatcaatttttt |
3320879 |
T |
|
| Q |
101 |
nctcagtggttttgtnnnnnnntaccttaaaattttcctgcttgaagactgaatgaagtagagttctgttgtacttccacgcatcgaaatcagacctgaa |
200 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3320878 |
tctcagtggttttgtaaaaaaataccttaaaattttcctgcttgaagactgaatgaagtagagttctgttgtacttccacgcatcgaaatcagacctgaa |
3320779 |
T |
|
| Q |
201 |
aattccttctccaaggggttcaaaaatctctctgaaattttttcctctaccatagttttcaaattttgtgcttgtgatgtgttgcacgttcacgggatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3320778 |
aattccttctccaaggggttcaaaaatctctctgaaattttttcctttaccatagttttcaaattttgtgcttgtgatgtgttgcacgttcatgggatca |
3320679 |
T |
|
| Q |
301 |
cttgtatacacaatcttcatgtttgttaaccatggtcgttcaaaaatgaaagttcctccgttttgtttcaaaactgagtttatatgatcatggttattag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3320678 |
cttgtatacacaatcttcatgtttgttaaccatggtccttcaaaaatgaaagttcctccgttttgtttcaaaactgagtttatatgatcatggttattag |
3320579 |
T |
|
| Q |
401 |
acatgttgtagaagatagaaggtaacattccaaacactggccatttcatcatgggtttgtttttgttgagcctccaatagtagattacaatgaaaataat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3320578 |
acatgttgtagaagatagaaggtaacattccaaacactggccatttcatcatgggtttgtttttgttgagcctccaatagtagattacaatgaaaataat |
3320479 |
T |
|
| Q |
501 |
caaaaggatttctccaatgccaaacacaaccataattgtgttggtttatgtttacaccccaaaatttgtgttaatctttgttattgttat |
590 |
Q |
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| T |
3320478 |
caaaaggatttctccaatgccaaacacaaccataattgtgttggtttatgtttacaccccaaaatttgtgttaatctttgttattgttat |
3320389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 175; Significance: 6e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 1 - 526
Target Start/End: Original strand, 12176559 - 12177090
Alignment:
| Q |
1 |
ttgtcaaaggttaaccttctaaaaacatcttgcaaatctacttgcaatccttttttacaagcattatcaagaaacaaaaggagacaactatcaannnnnn |
100 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||| ||||||||| | ||| |||| |||| | |
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| T |
12176559 |
ttgtcaaaggttaacctttgaaaaatatcttgcaaatccacttgcatcccttttttacaagcatgatcaagaaatacaagaagaccactaaatagttttt |
12176658 |
T |
|
| Q |
101 |
nctcagtggttttgtnnnnnnntaccttaaaattttcctgcttgaagactgaatgaagtagagttctgttgtacttccacgcatcgaaatcagacctgaa |
200 |
Q |
| |
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|||| ||||||||| ||||| |||| |||||| |||||| | |||||||||||| ||||||||||||||||| | |||||||||| || |
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| T |
12176659 |
tctcaatggttttgtgaataaatacctgaaaactttccttcttgaaaattgaatgaagtagtgttctgttgtacttccaaatgtgagaatcagacctaaa |
12176758 |
T |
|
| Q |
201 |
aattccttctccaaggggttcaaaaatctctctgaaattttttcctctaccatagttttcaaattttgtgcttgtgatgtgttgcacgttcacgggatca |
300 |
Q |
| |
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|||||| ||||||||| |||||||||||| ||||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||| ||| ||| |
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| T |
12176759 |
aattccatctccaaggatttcaaaaatctcgctgaaatcgtttcctttcccatagttttcgaattttgtgcttgtgatgtgttgcacgttcatggggtca |
12176858 |
T |
|
| Q |
301 |
cttgtatacacaatcttcatgtttgttaaccatggtcgttcaaaaatgaaagttcctccgttttgtttcaaaactgagtttatatgatcatggttattag |
400 |
Q |
| |
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|| || | | ||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| || ||||||| |||| | |
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| T |
12176859 |
ctggtgcaaagaatgttcatgtttgttaaccatggtccttcaaaaatgaaagttcctccattttgtttcaaaactaagtttagataatcatggatattgg |
12176958 |
T |
|
| Q |
401 |
acatgttgtagaagatagaaggtaacattccaaacactggccatttcatcatgggtttgtttttgttgagcctccaatagtagattacaatgaaaataa- |
499 |
Q |
| |
|
|||||||||| |||| | ||||| |||||||| ||| |||||||| | |||||| ||||| | ||||| |||||||| | |||| ||| ||||| || |
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| T |
12176959 |
acatgttgtataagagaccaggtagcattccaagcacaggccattttgtgatgggtgtgtttctattgagactccaataatggattgcaaggaaaagaaa |
12177058 |
T |
|
| Q |
500 |
-----tcaaaaggatttctccaatgccaaaca |
526 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
12177059 |
aaccgccaaaaggatttctccaatgccaaaca |
12177090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 123 - 372
Target Start/End: Original strand, 12165156 - 12165405
Alignment:
| Q |
123 |
taccttaaaattttcctgcttgaagactgaatgaagtagagttctgttgtacttccacgcatcgaaatcagacctgaaaattccttctccaaggggttca |
222 |
Q |
| |
|
||||| ||||||| |||||||||| | |||||||||||| |||||||||||||||| | |||||||||| ||||||||||||||||| |||| |
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|
| T |
12165156 |
tacctgaaaatttccctgcttgaaaattgaatgaagtagctttctgttgtacttccaaatgtgtgaatcagacctaaaaattccttctccaagaacttca |
12165255 |
T |
|
| Q |
223 |
aaaatctctctgaaattttttcctctaccatagttttcaaattttgtgcttgtgatgtgttgcacgttcacgggatcacttgtatacacaatcttcatgt |
322 |
Q |
| |
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|||||||||||||||| |||||| | || |||||||| ||||||||||||||||||||||||||||||| ||| ||||| || | | ||| ||||||| |
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| T |
12165256 |
aaaatctctctgaaatcatttcctttcccgtagttttcgaattttgtgcttgtgatgtgttgcacgttcatggggtcactggtgcaaagaatgttcatgt |
12165355 |
T |
|
| Q |
323 |
ttgttaaccatggtcgttcaaaaatgaaagttcctccgttttgtttcaaa |
372 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
12165356 |
ttgttaaccatggtccttcaaaaatgaaagttcctccattttgtttcaaa |
12165405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 12165034 - 12165107
Alignment:
| Q |
1 |
ttgtcaaaggttaaccttctaaaaacatcttgcaaatctacttgcaatccttttttacaagcattatcaagaaa |
74 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||| ||||||| || |||||| |||||| ||||||||| |
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| T |
12165034 |
ttgtcaaaggttaacctttgaaaaatatcttgcaaatccacttgcaccccatttttagaagcatgatcaagaaa |
12165107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 4 - 381
Target Start/End: Original strand, 36668892 - 36669269
Alignment:
| Q |
4 |
tcaaaggttaaccttctaaaaacatcttgcaaatctacttgcaatccttttttacaagcattatcaagaaacaaaaggagacaactatcaannnnnnnct |
103 |
Q |
| |
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||||| ||||||||| ||||||||||||||| || ||||||| |||||||||||||||| ||||||||||| ||| ||||||||| || || |
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| T |
36668892 |
tcaaatgttaacctttgaaaaacatcttgcaagtcaacttgcatcccttttttacaagcatgatcaagaaacataagaagacaactagaaatttttttct |
36668991 |
T |
|
| Q |
104 |
cagtggttttgtnnnnnnntaccttaaaattttcctgcttgaagactgaatgaagtagagttctgttgtacttccacgcatcgaaatcagacctgaaaat |
203 |
Q |
| |
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|| ||||||||| |||||||||| ||||||||||||| | |||||||| || ||||| ||||||||||| | | |||||||||||||||| |
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| T |
36668992 |
caatggttttgtgaagaaataccttaaaactttcctgcttgaaaatggaatgaaggagtgttctattgtacttccaagtgtgagaatcagacctgaaaat |
36669091 |
T |
|
| Q |
204 |
tccttctccaaggggttcaaaaatctctctgaaattttttcctctaccatagttttcaaattttgtgcttgtgatgtgttgcacgttcacgggatcactt |
303 |
Q |
| |
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|| ||||||||| |||||| |||||| |||| | |||||| | || ||||||||||| |||| |||||||| ||||||||||||| ||| ||||| |
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| T |
36669092 |
cccatctccaaggacttcaaatatctctgtgaattcatttcctttcccgtagttttcaaaacttgtacttgtgatatgttgcacgttcaaggggtcactg |
36669191 |
T |
|
| Q |
304 |
gtatacacaatcttcatgtttgttaaccatggtcgttcaaaaatgaaagttcctccgttttgtttcaaaactgagttt |
381 |
Q |
| |
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|| | ||||| ||||||||||||||||||| || ||||||||||||||||||||| ||||| || |||| ||||||| |
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|
| T |
36669192 |
gtgaaaacaatattcatgtttgttaaccatgctccttcaaaaatgaaagttcctccattttgctttaaaagtgagttt |
36669269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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