View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7114_low_3 (Length: 599)
Name: NF7114_low_3
Description: NF7114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7114_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 282 - 587
Target Start/End: Complemental strand, 12455499 - 12455194
Alignment:
| Q |
282 |
acatctataaattgtaccattcacatattagtttactgtatatgagagactttacatatcacaataaaattgcagactccactatgatcgatgaaggtta |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12455499 |
acatctataaattgtaccattcacatattagtttactgtatatgagagactttacatatcacaataaaattgcagactccactatgatcaatgaaggtta |
12455400 |
T |
|
| Q |
382 |
tcagcagaccaattcacattcaaccacagttttggctatacgccctgtctataactttttacaataatgtaagaagcgtgctagactatgaagcacaaat |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12455399 |
tcagcagaccaattcacattcaaccacagttttggctatacgccctgtctataactttttacaataatgtaagaagcgtgctagactatgaagcacaaat |
12455300 |
T |
|
| Q |
482 |
actcctcggattaggagttttccgatgtcgaatatgtatccgtgtccgtgtccatgtatgtgcttcgtaggtcgcatgttcaaatcttgtaaacgggctc |
581 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12455299 |
actcctcggattaggagttttccgatgtcgaatatgtatccgggtccgtgtccatgtatgtgcttcgtaggtcgcatgttcaaatcttgtaaacgggctc |
12455200 |
T |
|
| Q |
582 |
tctgct |
587 |
Q |
| |
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|||||| |
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| T |
12455199 |
tctgct |
12455194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 12456032 - 12455764
Alignment:
| Q |
17 |
agatttctgcactacagacccaacccc-tgagcaaaacgtcactgaagatcaacgacagcatgatctcaactaaacattgattcgcatatcacggcgata |
115 |
Q |
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| T |
12456032 |
agatttctgcactacagacccaactccatgagcaaaacgtcactgaagatcaacgactgcatgatctcaactaaacattgattcgcatatcacggcgata |
12455933 |
T |
|
| Q |
116 |
tacattcctacttataactttctcaacagactttcccaccattttacctcggcagttcagttgtattaggactttccttccaccggaagcaaggtgccca |
215 |
Q |
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| T |
12455932 |
tacattccgacttataactttctcaacagactttcccaccattttacctgggcagttcaattgtattaggactttccttccaccggaagcaaggtgccca |
12455833 |
T |
|
| Q |
216 |
ctattcatcatatctctcactcacctcaaattctagttgactcagagtgttggagtgtgtacgaataca |
284 |
Q |
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| T |
12455832 |
ctattcatcatatctctcactcacctcaaattcttgttgactcagagtgttggagtgtgtacgaataca |
12455764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 521
Target Start/End: Original strand, 5654501 - 5654557
Alignment:
| Q |
465 |
gactatgaagcacaaatactcctcggattaggagttttccgatgtcgaatatgtatc |
521 |
Q |
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||||||||||||||||||||| |||||||||| || ||||| ||||| ||| ||||| |
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| T |
5654501 |
gactatgaagcacaaatactcttcggattaggcgtattccggtgtcggatacgtatc |
5654557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 496
Target Start/End: Original strand, 30621753 - 30621782
Alignment:
| Q |
467 |
ctatgaagcacaaatactcctcggattagg |
496 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
30621753 |
ctatgaagcacaaatactcctcggattagg |
30621782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 499
Target Start/End: Complemental strand, 21211415 - 21211381
Alignment:
| Q |
465 |
gactatgaagcacaaatactcctcggattaggagt |
499 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
21211415 |
gactatgaagcacaaacactcctcggattaggagt |
21211381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 496
Target Start/End: Complemental strand, 47132212 - 47132184
Alignment:
| Q |
468 |
tatgaagcacaaatactcctcggattagg |
496 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
47132212 |
tatgaagcacaaatactcctcggattagg |
47132184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 496
Target Start/End: Original strand, 11596398 - 11596427
Alignment:
| Q |
467 |
ctatgaagcacaaatactcctcggattagg |
496 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11596398 |
ctatgaagcacaaatactcctcggattagg |
11596427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 515
Target Start/End: Original strand, 38134335 - 38134383
Alignment:
| Q |
467 |
ctatgaagcacaaatactcctcggattaggagttttccgatgtcgaata |
515 |
Q |
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|||||||||||| | ||||||||||||||| || | ||||||||||||| |
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| T |
38134335 |
ctatgaagcacatacactcctcggattaggcgtgtcccgatgtcgaata |
38134383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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