View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7114_low_7 (Length: 213)
Name: NF7114_low_7
Description: NF7114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7114_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 4405805 - 4405873
Alignment:
| Q |
12 |
agaatatatatataaaaagaaactagaacaaaaagataatg-gagacatcgaccaaaacctattaagca |
79 |
Q |
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| T |
4405805 |
agaatatatacataaaaagaaactagaacaaaaagataatgaaagacatcgaccaaaacctattaagca |
4405873 |
T |
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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 4405946 - 4405983
Alignment:
| Q |
159 |
aacgaacacaacgtaagatccttaactactctagtttc |
196 |
Q |
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| T |
4405946 |
aacgaacacaacataagatccttaactactctggtttc |
4405983 |
T |
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