View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7115_high_1 (Length: 441)

Name: NF7115_high_1
Description: NF7115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7115_high_1
NF7115_high_1
[»] chr4 (5 HSPs)
chr4 (1-423)||(36246242-36246664)
chr4 (84-127)||(52071519-52071562)
chr4 (81-126)||(27808566-27808611)
chr4 (51-120)||(31941926-31941995)
chr4 (51-120)||(32000885-32000954)
[»] chr2 (4 HSPs)
chr2 (34-152)||(2892226-2892344)
chr2 (310-423)||(2892440-2892553)
chr2 (26-152)||(37881267-37881393)
chr2 (350-423)||(37881832-37881905)
[»] chr3 (1 HSPs)
chr3 (78-126)||(44674752-44674800)
[»] chr8 (3 HSPs)
chr8 (78-121)||(39916909-39916952)
chr8 (45-128)||(11747427-11747510)
chr8 (87-127)||(7195699-7195739)
[»] chr1 (3 HSPs)
chr1 (88-131)||(27632581-27632624)
chr1 (84-127)||(45594286-45594329)
chr1 (88-126)||(17118247-17118285)
[»] chr5 (1 HSPs)
chr5 (84-121)||(19221386-19221423)


Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 36246664 - 36246242
Alignment:
Q  1 tagaagataggtccaaaagatcaaaacgtggattatgtgttacaggatcaattcccattcttaagagtcttttcctaatgtgagtgttccaataattctt 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36246664 tagaagataggtccaaaagatcaaaacgtggattatgtgtcacaggatcaattcccattcttaagagtcttttcctaatgtgagtgttccaataattctt 36246565  T
Q  101 gatttcattgtctgttcttcctggtagcctagaagcaattgaagaccacctacacaattcaaaactatgtagtttagtcacaaaaatcatatctattatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36246564 gatttcattgtctgttcttcctggtagcctagaagcaattgaagaccacctacacaattcaaaactatgtagtttagtcacaaaaatcatatctattatt 36246465  T
Q  201 ctgtcgtatatagtatcttaatcataatgaaaattaatatgtatttaactcactgttacacatgtagataaattgattaaaatttatatactgagagact 300  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36246464 ctgtcgtatatagtgtcttaatcataatgaaaattaatatgtatttaactcattgttacacatgtagataaattgattaaaatttatatactgagagact 36246365  T
Q  301 taattattattacttgttgccaagtatgctatgcagctgaattatggtttcttcttcttcaaaagagaatcgtcctctctttatatccggttggagatag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36246364 taattattattacttgttgccaagtatgctatgcagctgaattatggtttcttcttcttcaaaagagaatcgtcctctctttatatccggtcggagatag 36246265  T
Q  401 tttgtccaacgtagacgacaact 423  Q
    |||||||||||||||||||||||    
T  36246264 tttgtccaacgtagacgacaact 36246242  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 52071519 - 52071562
Alignment:
Q  84 gtgttccaataattcttgatttcattgtctgttcttcctggtag 127  Q
    ||||||||||||||||||||||||||||||||||  ||||||||    
T  52071519 gtgttccaataattcttgatttcattgtctgttcgccctggtag 52071562  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 27808611 - 27808566
Alignment:
Q  81 tgagtgttccaataattcttgatttcattgtctgttcttcctggta 126  Q
    |||||||||||||||||||| || ||||| ||||||||||||||||    
T  27808611 tgagtgttccaataattctttatctcattatctgttcttcctggta 27808566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 31941995 - 31941926
Alignment:
Q  51 attcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttc 120  Q
    ||||||||||||   ||||||||| | | ||| |||||||| || |||||||||||||||||||||||||    
T  31941995 attcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 31941926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 32000954 - 32000885
Alignment:
Q  51 attcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttc 120  Q
    ||||||||||||   ||||||||| | | ||| |||||||| || |||||||||||||||||||||||||    
T  32000954 attcccattcttgttagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 32000885  T

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Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 2892226 - 2892344
Alignment:
Q  34 tatgtgttacaggatcaattcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttcctggtagcctaga 133  Q
    |||||||||| ||||||||||||||||| || || |||||||||||||| ||||||||||| || || ||||||||||| || ||||||||||  | |||    
T  2892226 tatgtgttactggatcaattcccattctcaaaagccttttcctaatgtgtgtgttccaatagttttttatttcattgtccgtccttcctggtaatcgaga 2892325  T
Q  134 agcaattgaagaccaccta 152  Q
     ||||||| ||||||||||    
T  2892326 tgcaattgcagaccaccta 2892344  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 423
Target Start/End: Original strand, 2892440 - 2892553
Alignment:
Q  310 ttacttgttgccaagtatgctatgcagctgaattatggtttcttcttcttcaaaagagaatcgtcctctctttatatccggttggagatagtttgtccaa 409  Q
    ||||||||||||||| |||||||| |||||||| || || ||||| |||||||| || || || || |  |||||||| ||| |||||||||||||||||    
T  2892440 ttacttgttgccaagaatgctatgtagctgaataattgtctcttcctcttcaaatgaaaaccgaccacgttttatatctggtcggagatagtttgtccaa 2892539  T
Q  410 cgtagacgacaact 423  Q
    || |||||||||||    
T  2892540 cggagacgacaact 2892553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 152
Target Start/End: Original strand, 37881267 - 37881393
Alignment:
Q  26 acgtggattatgtgttacaggatcaattcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttcctggt 125  Q
    ||||||| |||| || ||||||||||||||  |||  |  ||||||||||||||||| |||||||| || ||||| |||||||||||||||||||| |||    
T  37881267 acgtggagtatgagtaacaggatcaattccacttcgaagtagtcttttcctaatgtgcgtgttccagtagttctttatttcattgtctgttcttccgggt 37881366  T
Q  126 agcctagaagcaattgaagaccaccta 152  Q
    |  |||| ||| || | ||||||||||    
T  37881367 aatctagcagctatagcagaccaccta 37881393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 423
Target Start/End: Original strand, 37881832 - 37881905
Alignment:
Q  350 tcttcttcttcaaaagagaatcgtcctctctttatatccggttggagatagtttgtccaacgtagacgacaact 423  Q
    |||||||||||||| ||||| | ||||||||| ||||| |||   | |||||||||||| || |||||||||||    
T  37881832 tcttcttcttcaaaggagaaccttcctctcttgatatcaggtctcaaatagtttgtccatcgaagacgacaact 37881905  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 44674800 - 44674752
Alignment:
Q  78 atgtgagtgttccaataattcttgatttcattgtctgttcttcctggta 126  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  44674800 atgtgagtgttccagtaattcttgatctcattatctgttcttcctggta 44674752  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 39916952 - 39916909
Alignment:
Q  78 atgtgagtgttccaataattcttgatttcattgtctgttcttcc 121  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  39916952 atgtgagtgttccaatagttcttgatctcattgtctgttcttcc 39916909  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 11747510 - 11747427
Alignment:
Q  45 ggatcaattcccattcttaagagtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttcctggtagc 128  Q
    |||||||||||||| | || ||| | |||| | | ||| ||||||||  |||||||||| |||||||| |||||||||||||||    
T  11747510 ggatcaattcccatgcatatgagacgtttctttaagtgtgtgttccataaattcttgatctcattgtcagttcttcctggtagc 11747427  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 7195739 - 7195699
Alignment:
Q  87 ttccaataattcttgatttcattgtctgttcttcctggtag 127  Q
    ||||| || |||||||||||||||||||||| |||||||||    
T  7195739 ttccagtagttcttgatttcattgtctgttcgtcctggtag 7195699  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 27632581 - 27632624
Alignment:
Q  88 tccaataattcttgatttcattgtctgttcttcctggtagccta 131  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||    
T  27632581 tccaatagttcttgatttcattgtctgttcttcctggaagccta 27632624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 45594286 - 45594329
Alignment:
Q  84 gtgttccaataattcttgatttcattgtctgttcttcctggtag 127  Q
    ||||||||||| ||||| || |||||||||||||||||||||||    
T  45594286 gtgttccaatagttcttaatctcattgtctgttcttcctggtag 45594329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 17118247 - 17118285
Alignment:
Q  88 tccaataattcttgatttcattgtctgttcttcctggta 126  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  17118247 tccagtaattctttatttcattgtctgttcttcctggta 17118285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 19221423 - 19221386
Alignment:
Q  84 gtgttccaataattcttgatttcattgtctgttcttcc 121  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  19221423 gtgttccaatgattctttatttcattgtctgttcttcc 19221386  T

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