View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7115_low_3 (Length: 244)

Name: NF7115_low_3
Description: NF7115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7115_low_3
NF7115_low_3
[»] chr1 (11 HSPs)
chr1 (1-238)||(47758812-47759049)
chr1 (1-238)||(47711914-47712151)
chr1 (1-238)||(47716665-47716902)
chr1 (1-202)||(47744429-47744630)
chr1 (1-188)||(6524857-6525044)
chr1 (1-161)||(6498116-6498276)
chr1 (1-161)||(47774492-47774652)
chr1 (3-150)||(6503437-6503584)
chr1 (17-150)||(6511071-6511204)
chr1 (1-112)||(47770633-47770744)
chr1 (17-144)||(6515494-6515621)
[»] chr5 (4 HSPs)
chr5 (1-151)||(27369176-27369326)
chr5 (1-161)||(28829324-28829484)
chr5 (1-103)||(28860360-28860462)
chr5 (1-142)||(28874930-28875071)
[»] scaffold0341 (2 HSPs)
scaffold0341 (3-150)||(5119-5266)
scaffold0341 (17-150)||(12752-12884)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 47758812 - 47759049
Alignment:
Q  1 attcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47758812 attcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattctt 47758911  T
Q  101 aaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaatgacttgtccaccggcaagtataccctgcaaatatatttcatttgtgtat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47758912 aaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaatgacttgtccaccggcaagtataccctgcaaatatatttcatttgtgtat 47759011  T
Q  201 aacaagaatgttaaagatgaagaatgtgatgtccatct 238  Q
    |||||||||||||||||||||||||||||||| |||||    
T  47759012 aacaagaatgttaaagatgaagaatgtgatgttcatct 47759049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 47711914 - 47712151
Alignment:
Q  1 attcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattctt 100  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47711914 attcatagataagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatttcgatgttgaagcttagcgactaaaagcacttcattctt 47712013  T
Q  101 aaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaatgacttgtccaccggcaagtataccctgcaaatatatttcatttgtgtat 200  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47712014 aaattcaatatccccttgtcctgaatttgttgacaaccttttgactgcaatgacttgtccaccggcaagtataccctgcaaatatatttcatttgtgtat 47712113  T
Q  201 aacaagaatgttaaagatgaagaatgtgatgtccatct 238  Q
    || ||||||||||||||||||||||||||||| |||||    
T  47712114 aaaaagaatgttaaagatgaagaatgtgatgttcatct 47712151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 47716665 - 47716902
Alignment:
Q  1 attcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattctt 100  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47716665 attcatagaaaagcaatctttctcttccttctagacaaaaaccaagtagtcaaactaaatttcgatgttgaagcttagcgactaaaagcacttcattctt 47716764  T
Q  101 aaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaatgacttgtccaccggcaagtataccctgcaaatatatttcatttgtgtat 200  Q
    |||||||| |||||| ||||||||||||||||||||||||||||  ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||    
T  47716765 aaattcaatatccccttgtcctgaatttgttgacaaccttttgatcgcaatcacttgtccaccggcgagtataccctgtaaatatatttcatttgtgtat 47716864  T
Q  201 aacaagaatgttaaagatgaagaatgtgatgtccatct 238  Q
    || ||| |  |||| ||||||||||||||||| |||||    
T  47716865 aataagtactttaatgatgaagaatgtgatgttcatct 47716902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 47744429 - 47744630
Alignment:
Q  1 attcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattctt 100  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47744429 attcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatttcgatgttgaagcttagcgactaaaagcacttcattctt 47744528  T
Q  101 aaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaatgacttgtccaccggcaagtataccctgcaaatatatttcatttgtgtat 200  Q
    |||||||| |||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| |||||    
T  47744529 aaattcaatatccccttgtcctgaatttgttgacaaccttttgaccgcaatcacttgtccaccggcgagtataccctgcaaatatatttcatttctgtat 47744628  T
Q  201 aa 202  Q
    ||    
T  47744629 aa 47744630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 6525044 - 6524857
Alignment:
Q  1 attcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattctt 100  Q
    ||||||| ||||| | ||||||||||||||| | ||| ||||||||||| | |||||| |||||||||||||| ||||| |||||||  |||||||||||    
T  6525044 attcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaagtttcgatgttgaagtttagccactaaaactacttcattctt 6524945  T
Q  101 aaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaatgacttgtccaccggcaagtataccctgcaaatatatt 188  Q
    |||||| | ||| || || || ||||   | ||||||||||||||  ||||  ||||||||  ||  ||| ||||||| |||||||||    
T  6524944 aaattctaaatctccttggccagaatccctcgacaaccttttgacaccaatctcttgtccattggggagtctaccctgaaaatatatt 6524857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 6498116 - 6498276
Alignment:
Q  1 attcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattctt 100  Q
    ||||||| ||||| | ||||||||||||||| ||  | ||||| ||||||| |||||||||||| |||||||||||||| || ||||| || ||||||||    
T  6498116 attcatatacaagtactctttctcttccttctagtgagaaaccgagtagtctaactaaatttcggtgttgaagcttagccaccaaaagtacctcattctt 6498215  T
Q  101 aaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaatgacttgtcca 161  Q
    ||| ||   ||| || ||||| ||| |  ||||||||||||| || |||||  ||||||||    
T  6498216 aaactccgaatctccttgtcccgaactcattgacaaccttttaacagcaatctcttgtcca 6498276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 47774652 - 47774492
Alignment:
Q  1 attcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattctt 100  Q
    ||||||||| ||||| | ||||||| ||||| | ||  ||||||||||| | ||||||||||||||||||||| || || |||||||| |||||||| ||    
T  47774652 attcataaataagcagtttttctctcccttctaaactgaaaccaagtagcctaactaaatttcgatgttgaagtttggctactaaaagtacttcattttt 47774553  T
Q  101 aaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaatgacttgtcca 161  Q
    |||||| ||||| || ||  | |||| | | ||||| |||||||| ||||| | |||||||    
T  47774552 aaattccacatctccttggtcagaatctttggacaatcttttgaccgcaatcatttgtcca 47774492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 150
Target Start/End: Original strand, 6503437 - 6503584
Alignment:
Q  3 tcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaa 102  Q
    ||||| ||||| | ||||||||||||||| || |||||||| |||| || ||||| |||||  |||||||| ||||| ||||||| ||||||||||||||    
T  6503437 tcatatacaagaagtctttctcttccttctaggcaaaaaccgagtaatctaactagatttctgtgttgaagtttagcaactaaaaacacttcattcttaa 6503536  T
Q  103 attcaacatccccctgtcctgaatttgttgacaaccttttgactgcaa 150  Q
    | ||   ||| || ||||| |||||  |||| ||||||||||| ||||    
T  6503537 actctgaatctccttgtccagaattcattgataaccttttgacagcaa 6503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 6511071 - 6511204
Alignment:
Q  17 tctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaacatccccc 116  Q
    ||||||||||||||| || || ||||| |||| ||  ||||||||||| |||||||| ||||| |||||||  |||||||||||||| || | ||| ||     
T  6511071 tctttctcttccttctaggcagaaaccgagtaatcttactaaatttcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctcct 6511170  T
Q  117 tgtcctgaatttgttgacaaccttttgactgcaa 150  Q
    ||||| |||||  |||| ||||||||||| ||||    
T  6511171 tgtccggaattcattgataaccttttgacagcaa 6511204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 47770744 - 47770633
Alignment:
Q  1 attcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattctt 100  Q
    ||||||||| ||| | |||||| || ||||| | ||  |||||||| |||| |||||||||||||||||||||||| || ||||| |  |||||||| ||    
T  47770744 attcataaataagaagtctttcactcccttctaaactgaaaccaagaagtctaactaaatttcgatgttgaagcttggctactaataatacttcattttt 47770645  T
Q  101 aaattcaacatc 112  Q
    |||||| |||||    
T  47770644 aaattccacatc 47770633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 6515494 - 6515621
Alignment:
Q  17 tctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaacatccccc 116  Q
    |||||| || ||||| || || ||||| |||| || |||||||||||| |||||||| ||||| |  |||| ||| ||||||||||| || | ||| ||     
T  6515494 tctttcactcccttctaggcagaaaccgagtaatctaactaaatttcggtgttgaagtttagccaggaaaaacacctcattcttaaactctagatctcct 6515593  T
Q  117 tgtcctgaatttgttgacaaccttttga 144  Q
    ||||| |||||  |||| ||||||||||    
T  6515594 tgtccagaattcattgataaccttttga 6515621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 27369176 - 27369326
Alignment:
Q  1 attcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattctt 100  Q
    ||||||||| ||| | ||||||||| ||||| ||||| ||||||||||| | ||||| ||||||||||||||| || || |||||||| |||||||| ||    
T  27369176 attcataaataagtagtctttctctcccttctagacagaaaccaagtagcctaactagatttcgatgttgaagtttggctactaaaagtacttcattttt 27369275  T
Q  101 aaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaat 151  Q
    ||| |||||||| || ||  | |||||||||||||||||||| || |||||    
T  27369276 aaactcaacatctccttggtcagaatttgttgacaaccttttcacagcaat 27369326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 28829324 - 28829484
Alignment:
Q  1 attcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattctt 100  Q
    ||||||| ||||| ||||||||||| ||||| | |  ||||||||| |||| |||||||||||| |||||||| || || || ||| | ||||| |||||    
T  28829324 attcatagacaagtaatctttctctcccttcaacagtaaaaccaaggagtctaactaaatttcggtgttgaagtttggccaccaaacgtacttcgttctt 28829423  T
Q  101 aaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaatgacttgtcca 161  Q
    |||||| | ||| || || || |||||| | || |||||||| || ||||| |||||||||    
T  28829424 aaattctagatctccttgaccagaatttatggataaccttttcaccgcaatcacttgtcca 28829484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 28860360 - 28860462
Alignment:
Q  1 attcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattctt 100  Q
    ||||||| ||||| | ||||||||| ||||| | |  |||||||||||||| ||||||||| || |||||||| || || | ||||||||||||||||||    
T  28860360 attcatagacaagtagtctttctctcccttcaatagtaaaaccaagtagtctaactaaattccggtgttgaagtttggccattaaaagcacttcattctt 28860459  T
Q  101 aaa 103  Q
    |||    
T  28860460 aaa 28860462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 28874930 - 28875071
Alignment:
Q  1 attcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattctt 100  Q
    ||||||| ||||| | ||||||||| ||||| | |  |||||||||||||| ||| ||||| || |||||||| || || | ||||||||||||||||||    
T  28874930 attcatagacaagtagtctttctctcccttcaatagtaaaaccaagtagtctaaccaaattccggtgttgaagtttggccattaaaagcacttcattctt 28875029  T
Q  101 aaattcaacatccccctgtcctgaatttgttgacaacctttt 142  Q
    |||||| | ||| || || || |||||  | |||||||||||    
T  28875030 aaattctatatctccttggccagaattcatggacaacctttt 28875071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 150
Target Start/End: Original strand, 5119 - 5266
Alignment:
Q  3 tcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaa 102  Q
    ||||| ||||| | ||||||||||||||| || |||||||| |||| || ||||| |||||  |||||||| ||||| ||||||| ||||||||||||||    
T  5119 tcatatacaagaagtctttctcttccttctaggcaaaaaccgagtaatctaactagatttctgtgttgaagtttagcaactaaaaacacttcattcttaa 5218  T
Q  103 attcaacatccccctgtcctgaatttgttgacaaccttttgactgcaa 150  Q
    | ||   ||| || ||||| |||||  |||| ||||||||||| ||||    
T  5219 actctgaatctccttgtccagaattcattgataaccttttgacagcaa 5266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 12752 - 12884
Alignment:
Q  17 tctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaacatccccc 116  Q
    ||||||||||||||| || || ||||| |||| ||  ||||||||||| |||||||| ||||| |||||||  |||||||||||||| || | ||| ||     
T  12752 tctttctcttccttctaggcagaaaccgagtaatcttactaaatttcggtgttgaagtttagccactaaaa-tacttcattcttaaactctagatctcct 12850  T
Q  117 tgtcctgaatttgttgacaaccttttgactgcaa 150  Q
    ||||| |||||  |||| ||||||||||| ||||    
T  12851 tgtccggaattcattgataaccttttgacagcaa 12884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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