View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7116_high_1 (Length: 768)
Name: NF7116_high_1
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7116_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 662; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 21 - 750
Target Start/End: Original strand, 36322655 - 36323385
Alignment:
| Q |
21 |
ctccattgtcgtagccgtttttgctgatacatggattggaagacacaaatccgttcttatttctggctgctttgagtttttggtaagtttcataattata |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36322655 |
ctccattgtcgtagccgtttttgctgatacatggattggaagacacaaatccgttcttatttctggctgctttgagtttttggtaagtttcataattata |
36322754 |
T |
|
| Q |
121 |
ttatgagcaatgttatttatcccgacacatgttgtcccaaaattgccagcgaaaatctattttccaatcaaatttcatgcttcccacaaatcaagggagg |
220 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36322755 |
ttatgagcaatgctatttatcccgatacatgttgtcccaaaattgccagcgaaaatctatttttcaatcaaatttcatgcttcccacaaatcaagggagg |
36322854 |
T |
|
| Q |
221 |
tggtggggcataatttagggagatatcatgattattcggtgcatgttcacttgtgaaattattgggacaatattt-gtcgtgatacatagcaatttcctt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36322855 |
tggtggggcataatttagggagatatcatgattattcggtgcatgttcacttgtgaaactattgggacaatattttgtcgtgatacatagcaatttcctt |
36322954 |
T |
|
| Q |
320 |
atattatatagagcatgtgacaaacgtttgacaccattatattggtggtggttgatgatggtcgcccggcggcggagctcccattaggatcgatggttga |
419 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36322955 |
atattatatagagcatgtgacaaatgtttgacaccattatattggtggtggttgatgatggtcgcccggcagcggagctcccattaggatcgatggttga |
36323054 |
T |
|
| Q |
420 |
gctcattttaagcttaggagaaggttgacctccccnnnnnnnggacccttgggagaagcaacatggacaaacattgttaacaaaaaacaaaactcatgtg |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36323055 |
gctcattttaagcttaggagaaggttgacctccccaaaaaaaggacccttgggagaagcaacatggacaaacattgttaacaaaaaacaaaattcatgtg |
36323154 |
T |
|
| Q |
520 |
tgtatgtgtagctaaagattaatggcaaacctcggttaaaatatgcatatcattttcataatttgttatacgaatatgtgtaaattttttctaaagatcg |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36323155 |
tgtatgtgtagctaaagattaatggcaaacctcggtttaaacatgcatatcattttcataatttgtaatacgaatatgtgtaaattttttctaaagatcg |
36323254 |
T |
|
| Q |
620 |
agcgagccattgtagttaactaatgattctgtaaatgcatatgaataaaaattttcctcaaatacctgaccgcaaaatattttaaattctttagcctatt |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36323255 |
agcgagccattgtagttaactaatgattctgtaaatgcatatgaataaaaattttcctcaaatacctgaccgcaaaatattttaaattctttagcctatt |
36323354 |
T |
|
| Q |
720 |
taaaacttatcaattacaagtaatgtaatga |
750 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
36323355 |
taaaacttatcaattacaagtaatgtaatga |
36323385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 36329453 - 36329542
Alignment:
| Q |
21 |
ctccattgtcgtagccgtttttgctgatacatggattggaagacacaaatccgttcttatttctggctgctttgagtttttggtaagttt |
110 |
Q |
| |
|
|||||||||||| |||||| |||||||| ||| ||||||||| | ||| |||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
36329453 |
ctccattgtcgtcgccgttcttgctgattcattcattggaagatataaaaccgttcttatttctggcttctttgagtgtttggtaagttt |
36329542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 17438909 - 17438840
Alignment:
| Q |
168 |
agcgaaaatctattttccaatcaaatttcatgcttcccacaaatcaagggaggtggtggggcataattta |
237 |
Q |
| |
|
||||| |||| ||| |||||| ||||||| | || |||||||||||||||||||||||||||||||||| |
|
|
| T |
17438909 |
agcgataatcaattgtccaattaaatttctttctggccacaaatcaagggaggtggtggggcataattta |
17438840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 11168178 - 11168124
Alignment:
| Q |
183 |
tccaatcaaatttcatgcttcccacaaatcaagggaggtggtggggcataattta |
237 |
Q |
| |
|
|||||||||||||| | || ||||||||||||||||||||||||||||| |||| |
|
|
| T |
11168178 |
tccaatcaaatttctttctgaccacaaatcaagggaggtggtggggcatatttta |
11168124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 5458397 - 5458463
Alignment:
| Q |
41 |
ttgctgatacatggattggaagacacaaatccgttcttatttctggctgctttgagtttttggtaag |
107 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| ||| | ||||||||| ||| |||||||||||||| |
|
|
| T |
5458397 |
ttgctgatacatggattggtagatacaaatctgttttattttctggcttcttcgagtttttggtaag |
5458463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 24606063 - 24605997
Alignment:
| Q |
129 |
aatgttatttatcccgacacatgttgtcccaaaattgccagcgaaaatctattttccaatcaaatttc |
196 |
Q |
| |
|
|||| |||||||||| | ||||||||||||||| |||| || ||||||| |||||| ||||||||||| |
|
|
| T |
24606063 |
aatgctatttatcccaatacatgttgtcccaaa-ttgctagtgaaaatccattttctaatcaaatttc |
24605997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University