View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7116_high_15 (Length: 373)
Name: NF7116_high_15
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7116_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 372
Target Start/End: Complemental strand, 40545664 - 40545299
Alignment:
| Q |
16 |
cacaaacaatatataaagacgtaaaagaaagaactttgtattattaatattgaacttctgacacttatccatccaaatgataacatatcaggattcggaa |
115 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40545664 |
cacaatcaatatataaagacgtaaaagaaagaactttgtatta---atattgaacttctgacacttatccatccaaatgataacatatcaggattctgaa |
40545568 |
T |
|
| Q |
116 |
actacaatgaagaatatnnnnnnn--------gcaaagcaaagcaaatggcctagtcaactagtaagtgtctttca----cttgataataattttgatat |
203 |
Q |
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||||||||||||||||| | |||| |||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||| |
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| T |
40545567 |
actacaatgaagaatatgcatgcataaaaaaaggaaaggaaagcaaatggcctagtcaactagaaagtgtctttcaaatacttgataatagttttgatat |
40545468 |
T |
|
| Q |
204 |
tagcaattgaccaccactttctataaaaggtaaaatgccaataaccacaatcatgagttaaactatctataggagaataataaatttcttttgattggaa |
303 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40545467 |
tagcaattgatcaccactttctataaaaggtaaaatgtcaataaccacaatcatgagtaaaactatctataggagaataataaatttcttttgattggaa |
40545368 |
T |
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| Q |
304 |
taaggcttttcttgtaaactttaatctgatcaagacaccattcacctcttcttttaacaccaaactcga |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
40545367 |
taaggcttttcttgtaaactttaatctgatcaagacaccattcacctcttcttttaataccaagctcga |
40545299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 57 - 266
Target Start/End: Complemental strand, 31790028 - 31789813
Alignment:
| Q |
57 |
tattaatattgaacttctgacacttatccatccaaatgataacatatcaggattcggaaactacaatgaagaatat--nnnnnnngcaaagcaaagcaaa |
154 |
Q |
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| T |
31790028 |
tattaatattgaacttatgacatttatccatccaaatgataacatatctggattctgaaactacaatggagaatatgcaggcataaaaaaggaaagcaaa |
31789929 |
T |
|
| Q |
155 |
tggcctagtcaactagtaagtgtctttc----acttgataataattttgatattagcaattgac-caccactttctataaaaggtaaaatgccaataacc |
249 |
Q |
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||||||| |||| || | ||||||||| ||||||||||||||||||||||||||| |||| |||| ||||| |||||||||||| |||||||| |
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| T |
31789928 |
aggcctaggcaacaagaatgtgtctttcaaatacttgataataattttgatattagcaactgacatgccac-ttctacgaaaggtaaaatgtcaataacc |
31789830 |
T |
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| Q |
250 |
acaatcatgagttaaac |
266 |
Q |
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|||||||||||| |||| |
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| T |
31789829 |
acaatcatgagtaaaac |
31789813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 266
Target Start/End: Complemental strand, 32033297 - 32033165
Alignment:
| Q |
142 |
aaagcaaagcaaatggcctagtcaactagtaagtgtctttc----acttgat----aataattttgatattagcaattgac-caccactttctataaaag |
232 |
Q |
| |
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|||| |||||||||||||||| ||||||| | ||||||||| ||||||| ||||||||||||||||||||||||| |||| ||||| |||| |
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| T |
32033297 |
aaaggaaagcaaatggcctaggcaactagaatgtgtctttcaaatacttgataataaataattttgatattagcaattgacatgccac-ttctacgaaag |
32033199 |
T |
|
| Q |
233 |
gtaaaatgccaataaccacaatcatgagttaaac |
266 |
Q |
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|||||| | |||||||||||||||||||| |||| |
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|
| T |
32033198 |
gtaaaacgtcaataaccacaatcatgagtaaaac |
32033165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 5162946 - 5162832
Alignment:
| Q |
16 |
cacaaacaatatataaagacgtaaaa-gaaagaactttgtattattaatattgaacttctgacacttatccatccaaatgataacatatcaggattcgga |
114 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||||||| | | ||||| ||| |||||||||||||||||||||| || |
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| T |
5162946 |
cacaaacaatatataaagacgtaaaaagaaagaactttgtatta---atattgaactaaaggtatttatctatctaaatgataacatatcaggattctga |
5162850 |
T |
|
| Q |
115 |
aactacaatgaagaatat |
132 |
Q |
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|||||||||||||||||| |
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|
| T |
5162849 |
aactacaatgaagaatat |
5162832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 5162717 - 5162668
Alignment:
| Q |
289 |
ttcttttgattggaataaggcttttcttgtaaactttaatctgatcaaga |
338 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
5162717 |
ttcttttgattggaagaaggcttttcttgtaaactttaatctgaccaaga |
5162668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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