View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7116_high_22 (Length: 309)

Name: NF7116_high_22
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7116_high_22
NF7116_high_22
[»] chr3 (39 HSPs)
chr3 (14-269)||(12094582-12094837)
chr3 (14-269)||(44277253-44277508)
chr3 (74-269)||(19911509-19911704)
chr3 (76-269)||(38805245-38805444)
chr3 (14-269)||(40931622-40931875)
chr3 (116-260)||(4226716-4226856)
chr3 (116-269)||(4235751-4235900)
chr3 (22-124)||(19911693-19911795)
chr3 (216-269)||(29375138-29375191)
chr3 (216-269)||(27707388-27707441)
chr3 (216-269)||(36881282-36881335)
chr3 (216-269)||(198855-198908)
chr3 (216-269)||(3383076-3383129)
chr3 (216-269)||(13364843-13364896)
chr3 (216-269)||(19241892-19241945)
chr3 (228-269)||(19912174-19912215)
chr3 (228-269)||(38806341-38806382)
chr3 (216-269)||(43750137-43750190)
chr3 (216-262)||(32835180-32835226)
chr3 (228-269)||(12095423-12095464)
chr3 (228-269)||(44276775-44276816)
chr3 (216-269)||(46694334-46694387)
chr3 (226-269)||(48963156-48963199)
chr3 (231-269)||(13365082-13365120)
chr3 (231-269)||(19241668-19241706)
chr3 (231-269)||(29375371-29375409)
chr3 (231-269)||(36881519-36881557)
chr3 (231-269)||(46694110-46694148)
chr3 (216-269)||(13702769-13702822)
chr3 (216-269)||(23088155-23088208)
chr3 (241-269)||(6910568-6910596)
chr3 (241-269)||(13499569-13499597)
chr3 (241-269)||(19823900-19823928)
chr3 (241-269)||(20765430-20765458)
chr3 (241-269)||(27010474-27010502)
chr3 (241-269)||(27010708-27010736)
chr3 (241-269)||(42490430-42490458)
chr3 (241-269)||(42761483-42761511)
chr3 (241-269)||(42761717-42761745)
[»] chr8 (36 HSPs)
chr8 (14-269)||(41307759-41308014)
chr8 (14-269)||(8697696-8697951)
chr8 (14-269)||(10646592-10646847)
chr8 (22-269)||(40486259-40486506)
chr8 (14-269)||(45278499-45278754)
chr8 (216-269)||(27034997-27035050)
chr8 (216-269)||(3585451-3585504)
chr8 (216-269)||(40918953-40919006)
chr8 (216-269)||(43275621-43275674)
chr8 (216-269)||(2540155-2540208)
chr8 (216-269)||(7146913-7146966)
chr8 (216-269)||(11174447-11174500)
chr8 (216-269)||(11646549-11646602)
chr8 (216-269)||(40058527-40058580)
chr8 (216-269)||(37345571-37345624)
chr8 (228-269)||(41305762-41305803)
chr8 (217-269)||(36068080-36068132)
chr8 (216-262)||(30999745-30999791)
chr8 (228-269)||(45278013-45278053)
chr8 (231-269)||(7147152-7147190)
chr8 (231-269)||(11646325-11646363)
chr8 (231-269)||(30999524-30999562)
chr8 (231-269)||(36068319-36068357)
chr8 (231-269)||(40058303-40058341)
chr8 (231-269)||(40918731-40918769)
chr8 (231-269)||(43275399-43275437)
chr8 (241-269)||(132017-132045)
chr8 (241-269)||(616783-616811)
chr8 (241-269)||(617017-617045)
chr8 (241-269)||(623176-623204)
chr8 (241-269)||(623410-623438)
chr8 (237-269)||(5878317-5878349)
chr8 (241-269)||(14237514-14237542)
chr8 (225-269)||(20546520-20546564)
chr8 (241-269)||(40494618-40494646)
chr8 (241-269)||(42587482-42587510)
[»] chr7 (27 HSPs)
chr7 (14-269)||(25059931-25060186)
chr7 (14-269)||(2911346-2911601)
chr7 (216-269)||(10981508-10981561)
chr7 (216-269)||(27813811-27813864)
chr7 (216-267)||(36453348-36453399)
chr7 (216-269)||(40348960-40349013)
chr7 (216-269)||(47110451-47110504)
chr7 (217-269)||(25614576-25614628)
chr7 (228-263)||(25059456-25059491)
chr7 (228-269)||(2910859-2910900)
chr7 (231-269)||(27814050-27814088)
chr7 (231-269)||(40349200-40349238)
chr7 (241-269)||(16778505-16778533)
chr7 (241-269)||(20885103-20885131)
chr7 (241-269)||(25566548-25566576)
chr7 (241-269)||(28061515-28061543)
chr7 (241-269)||(28061749-28061777)
chr7 (241-269)||(36623308-36623336)
chr7 (241-269)||(36623542-36623570)
chr7 (241-269)||(38852081-38852109)
chr7 (241-269)||(41897988-41898016)
chr7 (241-269)||(41898222-41898250)
chr7 (241-269)||(42877386-42877414)
chr7 (241-269)||(46103370-46103398)
chr7 (241-269)||(46103597-46103625)
chr7 (241-269)||(47156027-47156055)
chr7 (241-269)||(47156261-47156289)
[»] chr1 (37 HSPs)
chr1 (14-269)||(13984789-13985044)
chr1 (14-269)||(3943060-3943315)
chr1 (14-269)||(9588670-9588925)
chr1 (71-269)||(41959078-41959276)
chr1 (55-269)||(44228068-44228281)
chr1 (129-261)||(1168369-1168499)
chr1 (216-269)||(284333-284386)
chr1 (216-269)||(23045503-23045556)
chr1 (216-268)||(27211188-27211240)
chr1 (216-262)||(46771644-46771690)
chr1 (216-269)||(321626-321679)
chr1 (228-269)||(3943763-3943804)
chr1 (216-269)||(24772129-24772182)
chr1 (216-269)||(40783881-40783934)
chr1 (228-269)||(41959809-41959850)
chr1 (29-67)||(41959261-41959299)
chr1 (228-269)||(9589631-9589672)
chr1 (228-269)||(44227848-44227889)
chr1 (227-269)||(47038085-47038127)
chr1 (216-269)||(23526240-23526293)
chr1 (231-269)||(284572-284610)
chr1 (231-269)||(321865-321903)
chr1 (231-269)||(23045279-23045317)
chr1 (231-269)||(24771906-24771944)
chr1 (231-269)||(40783657-40783695)
chr1 (228-269)||(51064992-51065033)
chr1 (225-254)||(52037353-52037382)
chr1 (241-269)||(6402644-6402672)
chr1 (237-269)||(10845481-10845513)
chr1 (241-269)||(11641067-11641095)
chr1 (241-269)||(16120674-16120702)
chr1 (241-269)||(30701718-30701746)
chr1 (241-269)||(36399332-36399360)
chr1 (241-269)||(36757486-36757514)
chr1 (241-269)||(40771772-40771800)
chr1 (241-269)||(40772006-40772034)
chr1 (241-269)||(52024260-52024288)
[»] chr2 (21 HSPs)
chr2 (94-269)||(34224256-34224431)
chr2 (216-269)||(1102503-1102556)
chr2 (216-269)||(3518908-3518961)
chr2 (216-269)||(12969963-12970016)
chr2 (216-268)||(23366790-23366842)
chr2 (216-269)||(37673961-37674014)
chr2 (216-269)||(39938170-39938223)
chr2 (231-269)||(1646526-1646564)
chr2 (231-269)||(22388138-22388176)
chr2 (231-269)||(23367028-23367066)
chr2 (228-269)||(34222058-34222099)
chr2 (241-269)||(2183191-2183219)
chr2 (241-269)||(5405230-5405258)
chr2 (241-269)||(7608283-7608311)
chr2 (241-269)||(8042256-8042284)
chr2 (241-269)||(11841593-11841621)
chr2 (241-269)||(19141066-19141094)
chr2 (241-269)||(19141300-19141328)
chr2 (241-269)||(39358146-39358174)
chr2 (241-269)||(44365391-44365419)
chr2 (277-309)||(44551710-44551742)
[»] scaffold0257 (2 HSPs)
scaffold0257 (95-269)||(23467-23641)
scaffold0257 (228-269)||(23872-23913)
[»] chr6 (30 HSPs)
chr6 (95-269)||(19996594-19996768)
chr6 (216-269)||(15064918-15064971)
chr6 (216-269)||(1605579-1605632)
chr6 (216-269)||(7761301-7761354)
chr6 (216-269)||(17942443-17942496)
chr6 (216-269)||(29260192-29260245)
chr6 (216-269)||(8626482-8626535)
chr6 (228-269)||(19996322-19996363)
chr6 (217-269)||(4129435-4129487)
chr6 (216-262)||(30734707-30734753)
chr6 (216-269)||(13757208-13757261)
chr6 (220-263)||(30734836-30734879)
chr6 (231-269)||(1605817-1605855)
chr6 (231-269)||(7761539-7761577)
chr6 (231-269)||(8626721-8626759)
chr6 (231-269)||(29260431-29260469)
chr6 (216-269)||(8235624-8235677)
chr6 (217-254)||(31559961-31559998)
chr6 (241-269)||(4147931-4147959)
chr6 (241-269)||(18668688-18668716)
chr6 (241-269)||(18668922-18668950)
chr6 (241-269)||(19087958-19087986)
chr6 (241-269)||(19088192-19088220)
chr6 (241-269)||(20437017-20437045)
chr6 (241-269)||(22055006-22055034)
chr6 (241-269)||(24623941-24623969)
chr6 (241-269)||(25476042-25476070)
chr6 (241-269)||(32414913-32414941)
chr6 (241-269)||(32420754-32420782)
chr6 (241-269)||(32671816-32671844)
[»] chr5 (22 HSPs)
chr5 (95-269)||(15305094-15305265)
chr5 (216-269)||(12807077-12807130)
chr5 (216-269)||(16983258-16983311)
chr5 (216-269)||(25773649-25773702)
chr5 (216-269)||(30720716-30720769)
chr5 (216-269)||(36561323-36561376)
chr5 (216-269)||(37900848-37900901)
chr5 (55-137)||(31485620-31485702)
chr5 (216-269)||(10285281-10285334)
chr5 (228-269)||(15304822-15304863)
chr5 (216-269)||(40886834-40886887)
chr5 (231-269)||(12806853-12806891)
chr5 (231-269)||(30720492-30720530)
chr5 (231-269)||(36561099-36561137)
chr5 (231-269)||(40886610-40886648)
chr5 (217-258)||(7277647-7277688)
chr5 (241-269)||(978077-978105)
chr5 (241-269)||(978311-978339)
chr5 (241-269)||(8086264-8086292)
chr5 (241-269)||(9502627-9502655)
chr5 (241-269)||(14634157-14634185)
chr5 (241-269)||(33387453-33387481)
[»] chr4 (40 HSPs)
chr4 (99-254)||(19361662-19361817)
chr4 (94-235)||(20541495-20541640)
chr4 (217-269)||(40122710-40122762)
chr4 (216-269)||(14261044-14261097)
chr4 (216-269)||(21310425-21310478)
chr4 (216-269)||(21661759-21661812)
chr4 (216-269)||(21670523-21670576)
chr4 (216-269)||(25704651-25704704)
chr4 (216-269)||(34324807-34324860)
chr4 (217-269)||(12071561-12071613)
chr4 (216-269)||(22321491-22321544)
chr4 (216-269)||(24706471-24706524)
chr4 (216-267)||(31892240-31892291)
chr4 (217-269)||(44568837-44568889)
chr4 (228-262)||(19362189-19362223)
chr4 (216-269)||(20249236-20249289)
chr4 (231-269)||(12071799-12071837)
chr4 (231-269)||(14261283-14261321)
chr4 (231-269)||(21310660-21310698)
chr4 (231-269)||(24706247-24706285)
chr4 (231-269)||(25704890-25704928)
chr4 (231-269)||(44569076-44569114)
chr4 (216-262)||(50767871-50767917)
chr4 (241-269)||(2760730-2760758)
chr4 (241-269)||(2760961-2760989)
chr4 (241-269)||(4467520-4467548)
chr4 (241-269)||(19433358-19433386)
chr4 (231-267)||(21661537-21661573)
chr4 (231-267)||(21670301-21670337)
chr4 (241-269)||(26169986-26170014)
chr4 (241-269)||(26170221-26170249)
chr4 (241-269)||(29830343-29830371)
chr4 (241-269)||(35381128-35381156)
chr4 (241-269)||(38416650-38416678)
chr4 (241-269)||(38416884-38416912)
chr4 (241-269)||(44232077-44232105)
chr4 (241-269)||(45292066-45292094)
chr4 (241-269)||(47386520-47386548)
chr4 (241-269)||(55209574-55209602)
chr4 (241-269)||(55209808-55209836)
[»] scaffold1431 (1 HSPs)
scaffold1431 (216-269)||(123-176)
[»] scaffold1770 (1 HSPs)
scaffold1770 (217-269)||(170-222)
[»] scaffold0054 (2 HSPs)
scaffold0054 (216-269)||(45454-45507)
scaffold0054 (231-269)||(45692-45730)
[»] scaffold0022 (1 HSPs)
scaffold0022 (241-269)||(100647-100675)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 12094837 - 12094582
Alignment:
Q  14 aaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattggtattgaaggatggttgaatttaattaattttgg 113  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  12094837 aaccgcaataaaaacaatgtgatttactagatgaaccatatgtattggtattgtcggtatgtattggtattgaaggatgattgaatttaattaattttgg 12094738  T
Q  114 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12094737 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttg 12094638  T
Q  214 tccttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12094637 tccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 12094582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 44277253 - 44277508
Alignment:
Q  14 aaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattggtattgaaggatggttgaatttaattaattttgg 113  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||    
T  44277253 aaccgcagcaaaaaccatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttgg 44277352  T
Q  114 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  44277353 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggagaaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttg 44277452  T
Q  214 tccttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  44277453 tccttggttactgcaatttctccaaaatagacatgtattttgaaacggagggagta 44277508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 74 - 269
Target Start/End: Complemental strand, 19911704 - 19911509
Alignment:
Q  74 gtattggtattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaa 173  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  19911704 gtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgaggtggggtaaataaatgtaaaatggaggaaatcaaa 19911605  T
Q  174 gacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  19911604 gacaagggtataataggaacttttgtgtcaaactaacttgtccttggttactgcaatttctccaaaatgaacatgtattttgaaacggagggagta 19911509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 76 - 269
Target Start/End: Complemental strand, 38805444 - 38805245
Alignment:
Q  76 attggtattgaaggatggttgaatttaattaattttggtattggtattgg------gagtaattatgagatggggtaaataaatgtaaaatggaggaaat 169  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||    
T  38805444 attggtattgaaggatgattgaatttaattaattttggtattggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaat 38805345  T
Q  170 taaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38805344 caaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctctaaaatggacatgtattttaaaacggagggagta 38805245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 40931875 - 40931622
Alignment:
Q  14 aaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattggtattgaaggatggttgaatttaattaattttgg 113  Q
    ||||||| |||||||||| |||||||||||||||||| ||||||||||||||| |  ||||||| |||||||||||||  |||| |||||||||||||||    
T  40931875 aaccgcagcaaaaacaat-tgatttactagatgaaccgtatgtattggtattgtcactatgtatcggtattgaaggata-ttgactttaattaattttgg 40931778  T
Q  114 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttg 213  Q
    |||||||||||||||||| ||||||||||||||||||||  ||||||||||||||| ||||||||| ||||||||||||||||||||| || ||||||||    
T  40931777 tattggtattgggagtaactatgagatggggtaaataaacataaaatggaggaaatcaaagacaagagtataataggaacttttgtgttaatctagcttg 40931678  T
Q  214 tccttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    | |||||||| || ||||| | |||||| |||||||||||| ||||||| ||||||    
T  40931677 tgcttggttaatgtaatttttttaaaatagacatgtattttaaaacggatggagta 40931622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 116 - 260
Target Start/End: Complemental strand, 4226856 - 4226716
Alignment:
Q  116 ttggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttgtc 215  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |||||    
T  4226856 ttggtattgagagtaattatgagatggggtaaataaat--aaaatggaggaaatcaaacacaagggtataataggaacttt-gtgtcaaactagtttgtc 4226760  T
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacg 260  Q
    |||||||||||||||||||| ||||  ||||||||||||||||||    
T  4226759 cttggttactgcaatttctccaaaa-cgacatgtattttgaaacg 4226716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 116 - 269
Target Start/End: Complemental strand, 4235900 - 4235751
Alignment:
Q  116 ttggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttgtc 215  Q
    ||||||||| ||||||||||||||| ||||||||||||  |||||||||||||| ||| |||||||||||||||||||||| || |||||||||||||||    
T  4235900 ttggtattgagagtaattatgagattgggtaaataaat--aaaatggaggaaatcaaacacaagggtataataggaacttt-gtatcaaactagcttgtc 4235804  T
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| ||||  |||||||||||||||||| || |||||    
T  4235803 cttggttagtgcaatttctccaaaa-cgacatgtattttgaaacgaagtgagta 4235751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 19911795 - 19911693
Alignment:
Q  22 caaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattggtattgaaggatggttgaatttaattaattttggtattggta 121  Q
    |||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19911795 caaaaacaatgtgatttaatagatgaaccatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggta 19911696  T
Q  122 ttg 124  Q
    |||    
T  19911695 ttg 19911693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 29375191 - 29375138
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29375191 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 29375138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 27707388 - 27707441
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  27707388 cttggttactgcaatttctccaaaatggacatgtatttcgaaacggagggagta 27707441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 36881335 - 36881282
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  36881335 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 36881282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 198908 - 198855
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||| | ||||||||||| |||||||||||||||||||||||||||||||||    
T  198908 cttggtcagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 198855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 3383129 - 3383076
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||    
T  3383129 cttggttactgcaatttctccaaaatggacatatattttgaaacggaaggagta 3383076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 13364896 - 13364843
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||    
T  13364896 cttggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 13364843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 19241892 - 19241945
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||| | |||||||||||||||||||||||||||||||||    
T  19241892 cttggttagtgcaatttcaccaaaatggacatgtattttgaaacggagggagta 19241945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 19912174 - 19912215
Alignment:
Q  228 aatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19912174 aatttctctaaaatggacatgtattttgaaacggagggagta 19912215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 38806341 - 38806382
Alignment:
Q  228 aatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38806341 aatttctctaaaatggacatgtattttgaaacggagggagta 38806382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 43750190 - 43750137
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| ||||||||    
T  43750190 cttggttactccaatttctccaaaatggacatgtattttgaaacgaagggagta 43750137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 32835180 - 32835226
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacgga 262  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||    
T  32835180 cttggttattgcaatttctccaaaatggacatgtattttgaaacgga 32835226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 12095423 - 12095464
Alignment:
Q  228 aatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  12095423 aatttctctaaaatggacatatattttgaaacggagggagta 12095464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 44276816 - 44276775
Alignment:
Q  228 aatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  44276816 aatttctctaaaatggacatgtattttgaaacggagagagta 44276775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 46694334 - 46694387
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||| ||| ||||||||||| |||| ||||||||||||||||||||||||||||    
T  46694334 cttgattagtgcaatttctccaaaaaggacatgtattttgaaacggagggagta 46694387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 48963199 - 48963156
Alignment:
Q  226 gcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||| ||||| || ||||||||||||||||||||||||    
T  48963199 gcaatttctccaaaatagatatgtattttgaaacggagggagta 48963156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 13365082 - 13365120
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  13365082 ttctctaaaatggacaagtattatgaaacggagggagta 13365120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 19241706 - 19241668
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  19241706 ttctctaaaatggacaagtattatgaaacggagggagta 19241668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 29375371 - 29375409
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  29375371 ttctctaaaatggacaagtattatgaaacggagggagta 29375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 36881519 - 36881557
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  36881519 ttctctaaaatggacaagtattatgaaacggagggagta 36881557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 46694148 - 46694110
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  46694148 ttctctaaaatggacaagtattatgaaacggagggagta 46694110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 13702822 - 13702769
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||| ||||| | |||||||||| ||| ||| ||||||    
T  13702822 cttggttactgcaatttctccaaaataggcatgtattttaaaatggatggagta 13702769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 23088155 - 23088208
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||  ||||| ||||| ||||||||||| |||||||||    
T  23088155 cttggttagtgcaatttcttcaaaatagacatatattttgaaacagagggagta 23088208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 6910568 - 6910596
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  6910568 tggacatgtattttgaaacggagggagta 6910596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 13499569 - 13499597
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  13499569 tggacatgtattttgaaacggagggagta 13499597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 19823928 - 19823900
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  19823928 tggacatgtattttgaaacggagggagta 19823900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 20765430 - 20765458
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  20765430 tggacatgtattttgaaacggagggagta 20765458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 27010502 - 27010474
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  27010502 tggacatgtattttgaaacggagggagta 27010474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 27010708 - 27010736
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  27010708 tggacatgtattttgaaacggagggagta 27010736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 42490430 - 42490458
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  42490430 tggacatgtattttgaaacggagggagta 42490458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 42761511 - 42761483
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  42761511 tggacatgtattttgaaacggagggagta 42761483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 42761717 - 42761745
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  42761717 tggacatgtattttgaaacggagggagta 42761745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 41307759 - 41308014
Alignment:
Q  14 aaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattggtattgaaggatggttgaatttaattaattttgg 113  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||     
T  41307759 aaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgtcagtatgtattggtattgaaggatgattgaatttaattaattttga 41307858  T
Q  114 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41307859 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttg 41307958  T
Q  214 tccttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41307959 tccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 41308014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 8697696 - 8697951
Alignment:
Q  14 aaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattggtattgaaggatggttgaatttaattaattttgg 113  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||| ||||||||||||||||||||    
T  8697696 aaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatatattggtattgaaggatgattgaatttaattaattttgg 8697795  T
Q  114 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  8697796 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagtttg 8697895  T
Q  214 tccttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8697896 tccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 8697951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 10646847 - 10646592
Alignment:
Q  14 aaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattggtattgaaggatggttgaatttaattaattttgg 113  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || |||||||||||||||||    
T  10646847 aaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaaggatgattcaatttaattaattttgg 10646748  T
Q  114 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10646747 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttg 10646648  T
Q  214 tccttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  10646647 tccttggttactgcaatttctccaaaatggacatgtattttgaaacggaggaagta 10646592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 22 - 269
Target Start/End: Original strand, 40486259 - 40486506
Alignment:
Q  22 caaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattggtattgaaggatggttgaatttaattaattttggtattggta 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40486259 caaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttggtattggta 40486358  T
Q  122 ttgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40486359 ttgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaattagcttgtccttggt 40486458  T
Q  222 tactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||    
T  40486459 tactgcaatttcttcaaaatggacatgtattttgaaacggagggagta 40486506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 45278499 - 45278754
Alignment:
Q  14 aaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattggtattgaaggatggttgaatttaattaattttgg 113  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||    
T  45278499 aaccgcagtaaaaacaatgtgatttactagatgaaccatatgtattggtattgccaatatgtattggtattgaaggatgattgaatttaattaattttgg 45278598  T
Q  114 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  45278599 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaattagcttg 45278698  T
Q  214 tccttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45278699 tccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 45278754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 27035050 - 27034997
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27035050 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 27034997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 3585504 - 3585451
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  3585504 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 3585451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 40918953 - 40919006
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  40918953 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 40919006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 43275621 - 43275674
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  43275621 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 43275674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 2540155 - 2540208
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||| ||||    
T  2540155 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggaggaagta 2540208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 7146966 - 7146913
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  7146966 cttggttactgcaatttcttcaaaatggacatgtattttgaaacggaaggagta 7146913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 11174447 - 11174500
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||    
T  11174447 cttggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 11174500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 11646549 - 11646602
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||| ||||||||    
T  11646549 cttggttagtgcaatttctccaaaatggacatgtattttgaaacgaagggagta 11646602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 40058527 - 40058580
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| |||||||||||  ||||||||||||||||||||||||||||||||    
T  40058527 cttggttagtgcaatttctccgaaatggacatgtattttgaaacggagggagta 40058580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 37345624 - 37345571
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||  ||||||||||  |||||||||||||||||||||||||||||||||    
T  37345624 cttggttggtgcaatttcttcaaaatggacatgtattttgaaacggagggagta 37345571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 41305803 - 41305762
Alignment:
Q  228 aatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  41305803 aatttctctaaaatggacatgtattttgaaacggagagagta 41305762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 36068132 - 36068080
Alignment:
Q  217 ttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||| | ||||| ||| |||||||||||||||||||||||||||||||||    
T  36068132 ttggttagtacaattcctccaaaatggacatgtattttgaaacggagggagta 36068080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 30999745 - 30999791
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacgga 262  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  30999745 cttggttagtgcaatttctccaaaattgacatgtattttgaaacgga 30999791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 45278053 - 45278013
Alignment:
Q  228 aatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  45278053 aatttctctaaaatggacatgtattttgaaac-gagggagta 45278013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 7147152 - 7147190
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  7147152 ttctctaaaatggacaagtattatgaaacggagggagta 7147190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 11646363 - 11646325
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  11646363 ttctctaaaatggacaagtattatgaaacggagggagta 11646325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 30999562 - 30999524
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  30999562 ttctctaaaatggacaagtattatgaaacggagggagta 30999524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 36068319 - 36068357
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  36068319 ttctctaaaatggacaagtattatgaaacggagggagta 36068357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 40058341 - 40058303
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  40058341 ttctctaaaatggacaagtattatgaaacggagggagta 40058303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 40918769 - 40918731
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  40918769 ttctctaaaatggacaagtattatgaaacggagggagta 40918731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 43275437 - 43275399
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  43275437 ttctctaaaatggacaagtattatgaaacggagggagta 43275399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 132045 - 132017
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  132045 tggacatgtattttgaaacggagggagta 132017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 616811 - 616783
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  616811 tggacatgtattttgaaacggagggagta 616783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 617017 - 617045
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  617017 tggacatgtattttgaaacggagggagta 617045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 623204 - 623176
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  623204 tggacatgtattttgaaacggagggagta 623176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 623410 - 623438
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  623410 tggacatgtattttgaaacggagggagta 623438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 5878349 - 5878317
Alignment:
Q  237 aaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||||||||||||| |||||||||||||||    
T  5878349 aaaatggacatgtatttggaaacggagggagta 5878317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 14237514 - 14237542
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  14237514 tggacatgtattttgaaacggagggagta 14237542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 20546520 - 20546564
Alignment:
Q  225 tgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||||||  ||||||||||| |||||||||| ||||||||||    
T  20546520 tgcaatttcttcaaaatggacatatattttgaaatggagggagta 20546564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 40494618 - 40494646
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  40494618 tggacatgtattttgaaacggagggagta 40494646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 42587482 - 42587510
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  42587482 tggacatgtattttgaaacggagggagta 42587510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 25059931 - 25060186
Alignment:
Q  14 aaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattggtattgaaggatggttgaatttaattaattttgg 113  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||    
T  25059931 aaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgtcagtatgtattggtattgaaggatgattgaatttaattaattttgg 25060030  T
Q  114 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttg 213  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25060031 tattggtattgagagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttg 25060130  T
Q  214 tccttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25060131 tccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 25060186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 2911346 - 2911601
Alignment:
Q  14 aaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattggtattgaaggatggttgaatttaattaattttgg 113  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||    
T  2911346 aaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttgg 2911445  T
Q  114 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  2911446 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaattagcttg 2911545  T
Q  214 tccttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  2911546 tccttggttactgcaatttctccaaaatggacatgtattttgaaatggagggagta 2911601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 10981561 - 10981508
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  10981561 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 10981508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 27813864 - 27813811
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  27813864 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 27813811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 36453348 - 36453399
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggag 267  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  36453348 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggag 36453399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 40349013 - 40348960
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||    
T  40349013 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggaaggagta 40348960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 47110504 - 47110451
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||| ||||||||||    
T  47110504 cttggttagtgcaatttctccaaaatggacatgtattttgaaatggagggagta 47110451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 25614576 - 25614628
Alignment:
Q  217 ttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||| ||||||    
T  25614576 ttggttagtgcaatttctccaaaatggacatgtattttgaaacggaaggagta 25614628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 263
Target Start/End: Complemental strand, 25059491 - 25059456
Alignment:
Q  228 aatttctctaaaatggacatgtattttgaaacggag 263  Q
    ||||||||||||||||||||||||||||||||||||    
T  25059491 aatttctctaaaatggacatgtattttgaaacggag 25059456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 2910900 - 2910859
Alignment:
Q  228 aatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||| |||||| |||||||||||||||||||||||||||    
T  2910900 aatttctttaaaatagacatgtattttgaaacggagggagta 2910859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 27814050 - 27814088
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  27814050 ttctctaaaatggacaagtattatgaaacggagggagta 27814088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 40349200 - 40349238
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  40349200 ttctctaaaatggacaagtattatgaaacggagggagta 40349238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 16778533 - 16778505
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  16778533 tggacatgtattttgaaacggagggagta 16778505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 20885131 - 20885103
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  20885131 tggacatgtattttgaaacggagggagta 20885103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 25566576 - 25566548
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  25566576 tggacatgtattttgaaacggagggagta 25566548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 28061543 - 28061515
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  28061543 tggacatgtattttgaaacggagggagta 28061515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 28061749 - 28061777
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  28061749 tggacatgtattttgaaacggagggagta 28061777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 36623336 - 36623308
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  36623336 tggacatgtattttgaaacggagggagta 36623308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 36623542 - 36623570
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  36623542 tggacatgtattttgaaacggagggagta 36623570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 38852081 - 38852109
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  38852081 tggacatgtattttgaaacggagggagta 38852109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 41898016 - 41897988
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  41898016 tggacatgtattttgaaacggagggagta 41897988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 41898222 - 41898250
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  41898222 tggacatgtattttgaaacggagggagta 41898250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 42877414 - 42877386
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  42877414 tggacatgtattttgaaacggagggagta 42877386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 46103398 - 46103370
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  46103398 tggacatgtattttgaaacggagggagta 46103370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 46103597 - 46103625
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  46103597 tggacatgtattttgaaacggagggagta 46103625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 47156055 - 47156027
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  47156055 tggacatgtattttgaaacggagggagta 47156027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 47156261 - 47156289
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  47156261 tggacatgtattttgaaacggagggagta 47156289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 13984789 - 13985044
Alignment:
Q  14 aaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattggtattgaaggatggttgaatttaattaattttgg 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||    
T  13984789 aaccacaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttgg 13984888  T
Q  114 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13984889 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaactagcttg 13984988  T
Q  214 tccttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  13984989 tccttggttactgcaatttctccaaaatggacatgtattttgaaacggatggagta 13985044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 3943315 - 3943060
Alignment:
Q  14 aaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattggtattgaaggatggttgaatttaattaattttgg 113  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||    
T  3943315 aaccgcagtaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttgg 3943216  T
Q  114 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  3943215 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaacttttgtgtcaaattagcttg 3943116  T
Q  214 tccttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3943115 tccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 3943060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 9588925 - 9588670
Alignment:
Q  14 aaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattggtattgaaggatggttgaatttaattaattttgg 113  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||    
T  9588925 aaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattggtattgaaggatgattgaatttaattaattttgg 9588826  T
Q  114 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| |||    
T  9588825 tattggtattgggagtaattatgagatggggtaaataaatgtaaaatggagaaaatcaaagacaagggtataataggaacttttgtgtcaaaatagattg 9588726  T
Q  214 tccttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9588725 tccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 9588670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 71 - 269
Target Start/End: Complemental strand, 41959276 - 41959078
Alignment:
Q  71 tatgtattggtattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatt 170  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41959276 tatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatc 41959177  T
Q  171 aaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  41959176 aaagacaagggtataatatgaacttttgtgtcaaactagcttgtccttggttattgcaatttctccaaaatggacatgtattttgaaacggagggagta 41959078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 55 - 269
Target Start/End: Original strand, 44228068 - 44228281
Alignment:
Q  55 gtattggtattgacggtatgtattggtattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatg 154  Q
    |||| ||||||| ||||||||||||||||||     || |||| ||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||    
T  44228068 gtatcggtattgccggtatgtattggtattgccatttgattgactttaattaaatttggtattggtattggaagtgattattagatggggtaaataaatg 44228167  T
Q  155 taaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgcaatttctctaaaatggacatgtatttt 254  Q
    ||||||| ||||||| ||| ||||||||||||||||||||||| |||| | ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  44228168 taaaatgaaggaaataaaaaacaagggtataataggaacttttatgtc-agctagcttgtccttggttacagcaatttctccaaaatggacatgtatttt 44228266  T
Q  255 gaaacggagggagta 269  Q
    |||| ||||| ||||    
T  44228267 gaaatggaggtagta 44228281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 129 - 261
Target Start/End: Complemental strand, 1168499 - 1168369
Alignment:
Q  129 taattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttgtccttggttactgca 228  Q
    ||||||||||| |||||||||||||  |||||||||||||| ||||||||||||| | || |||||||||||||||| ||||||||||||||||||||||    
T  1168499 taattatgagacggggtaaataaat--aaaatggaggaaatcaaagacaagggtaaactatgaacttttgtgtcaaaatagcttgtccttggttactgca 1168402  T
Q  229 atttctctaaaatggacatgtattttgaaacgg 261  Q
    ||||||  ||||  |||||||||||||||||||    
T  1168401 atttcttcaaaaacgacatgtattttgaaacgg 1168369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 284386 - 284333
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  284386 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 284333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 23045503 - 23045556
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  23045503 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 23045556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 27211188 - 27211240
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagt 268  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  27211188 cttggttattgcaatttctccaaaatggacatgtattttgaaacggagggagt 27211240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 46771690 - 46771644
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacgga 262  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  46771690 cttggttactgcaatttctccaaaatggacatgtattttgaaacgga 46771644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 321679 - 321626
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||    
T  321679 cttggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 321626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 3943763 - 3943804
Alignment:
Q  228 aatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3943763 aatttctctaaaatggacatgtattttgaaacggagggagta 3943804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 24772129 - 24772182
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||  |||||||||||||||||||||||||||||||||    
T  24772129 cttggttagtgcaatttcttcaaaatggacatgtattttgaaacggagggagta 24772182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 40783881 - 40783934
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||    
T  40783881 cttggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 40783934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 41959809 - 41959850
Alignment:
Q  228 aatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41959809 aatttctctaaaatggacatgtattttgaaacggagggagta 41959850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 41959299 - 41959261
Alignment:
Q  29 aatgtgatttactagatgaaccatatgtattggtattga 67  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41959299 aatgtgatttactagatgaaccatatgtattggtattga 41959261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 9589631 - 9589672
Alignment:
Q  228 aatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  9589631 aatttctctaaaatagacatgtattttgaaacggagggagta 9589672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 44227889 - 44227848
Alignment:
Q  228 aatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  44227889 aatttctccaaaatggacatgtattttgaaacggagggagta 44227848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 47038085 - 47038127
Alignment:
Q  227 caatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  47038085 caatttctccaaaatggacatgtattttgaaacggatggagta 47038127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 23526293 - 23526240
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||| ||||||||||||||| |||||| ||||||||||||||| ||| ||||||    
T  23526293 cttgattactgcaatttctccaaaatgaacatgtattttgaaatggaaggagta 23526240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 284572 - 284610
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  284572 ttctctaaaatggacaagtattatgaaacggagggagta 284610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 321865 - 321903
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  321865 ttctctaaaatggacaagtattatgaaacggagggagta 321903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 23045317 - 23045279
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  23045317 ttctctaaaatggacaagtattatgaaacggagggagta 23045279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 24771944 - 24771906
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  24771944 ttctctaaaatggacaagtattatgaaacggagggagta 24771906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 40783695 - 40783657
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  40783695 ttctctaaaatggacaagtattatgaaacggagggagta 40783657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 51064992 - 51065033
Alignment:
Q  228 aatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||    
T  51064992 aatttctttaaaatggacaagtattgtgaaacggagggagta 51065033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 254
Target Start/End: Original strand, 52037353 - 52037382
Alignment:
Q  225 tgcaatttctctaaaatggacatgtatttt 254  Q
    ||||||||||||||||||||||||||||||    
T  52037353 tgcaatttctctaaaatggacatgtatttt 52037382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 6402644 - 6402672
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  6402644 tggacatgtattttgaaacggagggagta 6402672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 10845513 - 10845481
Alignment:
Q  237 aaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||||||||||||||||||||||| |||||    
T  10845513 aaaatggacatgtattttgaaacggagtgagta 10845481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 11641095 - 11641067
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  11641095 tggacatgtattttgaaacggagggagta 11641067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 16120674 - 16120702
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  16120674 tggacatgtattttgaaacggagggagta 16120702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 30701746 - 30701718
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  30701746 tggacatgtattttgaaacggagggagta 30701718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 36399332 - 36399360
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  36399332 tggacatgtattttgaaacggagggagta 36399360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 36757514 - 36757486
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  36757514 tggacatgtattttgaaacggagggagta 36757486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 40771800 - 40771772
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  40771800 tggacatgtattttgaaacggagggagta 40771772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 40772006 - 40772034
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  40772006 tggacatgtattttgaaacggagggagta 40772034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 52024260 - 52024288
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  52024260 tggacatgtattttgaaacggagggagta 52024288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 94 - 269
Target Start/End: Original strand, 34224256 - 34224431
Alignment:
Q  94 ttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaac 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34224256 ttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaac 34224355  T
Q  194 ttttgtgtcaaactagcttgtccttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34224356 ttttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 34224431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 1102556 - 1102503
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1102556 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 1102503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 3518961 - 3518908
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  3518961 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 3518908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 12969963 - 12970016
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  12969963 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 12970016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 23366842 - 23366790
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagt 268  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  23366842 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagt 23366790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 37673961 - 37674014
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||    
T  37673961 cttggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 37674014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 39938223 - 39938170
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| ||||||| |||||||||||||||||||||||||    
T  39938223 cttggttagtgcaatttctccaaaatggtcatgtattttgaaacggagggagta 39938170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 1646526 - 1646564
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  1646526 ttctctaaaatggacaggtattatgaaacggagggagta 1646564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 22388176 - 22388138
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  22388176 ttctctaaaatggacaagtattatgaaacggagggagta 22388138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 23367028 - 23367066
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  23367028 ttctctaaaatggacaagtattatgaaacggagggagta 23367066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 34222099 - 34222058
Alignment:
Q  228 aatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||    
T  34222099 aatttctataaaatggacatgtattttaaaacggaaggagta 34222058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 2183191 - 2183219
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  2183191 tggacatgtattttgaaacggagggagta 2183219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 5405230 - 5405258
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  5405230 tggacatgtattttgaaacggagggagta 5405258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 7608283 - 7608311
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  7608283 tggacatgtattttgaaacggagggagta 7608311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 8042256 - 8042284
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  8042256 tggacatgtattttgaaacggagggagta 8042284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 11841621 - 11841593
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  11841621 tggacatgtattttgaaacggagggagta 11841593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 19141094 - 19141066
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  19141094 tggacatgtattttgaaacggagggagta 19141066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 19141300 - 19141328
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  19141300 tggacatgtattttgaaacggagggagta 19141328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 39358174 - 39358146
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  39358174 tggacatgtattttgaaacggagggagta 39358146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 44365391 - 44365419
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  44365391 tggacatgtattttgaaacggagggagta 44365419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 44551742 - 44551710
Alignment:
Q  277 accaaataatcaatcataaaagttgagtgttga 309  Q
    |||||||||| ||||||||||||||||||||||    
T  44551742 accaaataattaatcataaaagttgagtgttga 44551710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 95 - 269
Target Start/End: Complemental strand, 23641 - 23467
Alignment:
Q  95 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaact 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23641 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact 23542  T
Q  195 tttgtgtcaaactagcttgtccttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23541 tttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 23467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 23872 - 23913
Alignment:
Q  228 aatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  23872 aatttctctaaaatggacatgtattttgaaacggatggagta 23913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 95 - 269
Target Start/End: Original strand, 19996594 - 19996768
Alignment:
Q  95 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaact 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  19996594 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaaaggtataataggaact 19996693  T
Q  195 tttgtgtcaaactagcttgtccttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  19996694 tttgtgtcaaactagcttgtccttggttactgcaatttctccaaaatagacatgtattttgaaacggagggagta 19996768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 15064918 - 15064971
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15064918 cttggttgctgcaatttctctaaaatggacatgtattttgaaacggagggagta 15064971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 1605632 - 1605579
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  1605632 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 1605579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 7761354 - 7761301
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  7761354 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 7761301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 17942496 - 17942443
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  17942496 cttggttactgcaatttctcaaaaatggacatgtattttgaaacgaagggagta 17942443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 29260245 - 29260192
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  29260245 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 29260192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 8626535 - 8626482
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||  |||||||||||||||||||||||||||||||||    
T  8626535 cttggttaatgcaatttcttcaaaatggacatgtattttgaaacggagggagta 8626482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 19996363 - 19996322
Alignment:
Q  228 aatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19996363 aatttctctaaaatggacatgtattttgaaacggagggagta 19996322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 4129487 - 4129435
Alignment:
Q  217 ttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  4129487 ttggttactgcaatttctccaaagtggatatgtattttgaaacggagggagta 4129435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 30734707 - 30734753
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacgga 262  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||    
T  30734707 cttggttagtgcaatttctccaaaatggacatgtattttgaaacgga 30734753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 13757261 - 13757208
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| || |||||||| ||||||||||||||||||||||||||| |||||    
T  13757261 cttggttagtgtaatttctccaaaatggacatgtattttgaaacggagagagta 13757208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 263
Target Start/End: Original strand, 30734836 - 30734879
Alignment:
Q  220 gttactgcaatttctctaaaatggacatgtattttgaaacggag 263  Q
    |||||||||||||||  |||||||||||||||||||||||||||    
T  30734836 gttactgcaatttcttcaaaatggacatgtattttgaaacggag 30734879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 1605817 - 1605855
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  1605817 ttctctaaaatggacaagtattatgaaacggagggagta 1605855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 7761539 - 7761577
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  7761539 ttctctaaaatggacaagtattatgaaacggagggagta 7761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 8626721 - 8626759
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  8626721 ttctctaaaatggacaagtattatgaaacggagggagta 8626759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 29260431 - 29260469
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  29260431 ttctctaaaatggacaagtattatgaaacggagggagta 29260469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 8235677 - 8235624
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||  |||||| ||||||||||| |||  |||||||||    
T  8235677 cttggttactgcaatttcttcaaaatgtacatgtattttaaaatagagggagta 8235624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 31559961 - 31559998
Alignment:
Q  217 ttggttactgcaatttctctaaaatggacatgtatttt 254  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  31559961 ttggttaatgcaatttctccaaaatggacatgtatttt 31559998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 4147959 - 4147931
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  4147959 tggacatgtattttgaaacggagggagta 4147931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 18668716 - 18668688
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  18668716 tggacatgtattttgaaacggagggagta 18668688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 18668922 - 18668950
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  18668922 tggacatgtattttgaaacggagggagta 18668950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 19087986 - 19087958
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  19087986 tggacatgtattttgaaacggagggagta 19087958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 19088192 - 19088220
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  19088192 tggacatgtattttgaaacggagggagta 19088220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 20437045 - 20437017
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  20437045 tggacatgtattttgaaacggagggagta 20437017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 22055006 - 22055034
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  22055006 tggacatgtattttgaaacggagggagta 22055034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 24623969 - 24623941
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  24623969 tggacatgtattttgaaacggagggagta 24623941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 25476042 - 25476070
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  25476042 tggacatgtattttgaaacggagggagta 25476070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 32414913 - 32414941
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  32414913 tggacatgtattttgaaacggagggagta 32414941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 32420754 - 32420782
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  32420754 tggacatgtattttgaaacggagggagta 32420782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 32671844 - 32671816
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  32671844 tggacatgtattttgaaacggagggagta 32671816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 6e-74; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 95 - 269
Target Start/End: Original strand, 15305094 - 15305265
Alignment:
Q  95 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaact 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  15305094 tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggatgaaatcaaagacaagggtataataggaact 15305193  T
Q  195 tttgtgtcaaactagcttgtccttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||||||||| |||||||    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15305194 tttgtgtcaaacttgcttgtc---agttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 15305265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 12807077 - 12807130
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  12807077 cttggttaatgcaatttctccaaaatggacatgtattttgaaacggagggagta 12807130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 16983311 - 16983258
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  16983311 cttggttactgcaatttctccaaaatggacatgtattttgaaacagagggagta 16983258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 25773702 - 25773649
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  25773702 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 25773649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 30720716 - 30720769
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  30720716 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 30720769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 36561323 - 36561376
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  36561323 cttgattactgcaatttttctaaaatggacatgtattttgaaacggatggagta 36561376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 37900848 - 37900901
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  37900848 cttggttactgcaatttctccaaaatggatgtgtattttgaaacggagggagta 37900901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 31485702 - 31485620
Alignment:
Q  55 gtattggtattgacggtatgtattggtattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatga 137  Q
    |||||||||||  ||||||||||||||||||     || |||| ||||||||||||||||||||||||| | |||||||||||    
T  31485702 gtattggtattaccggtatgtattggtattgccatttgattgactttaattaattttggtattggtattcgaagtaattatga 31485620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 10285281 - 10285334
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||    
T  10285281 cttggttaatgcaatttctccaaaatagacatctattttgaaacggagggagta 10285334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 15304863 - 15304822
Alignment:
Q  228 aatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  15304863 aatttctctaaaatggacatgtattttaaaacggagggagta 15304822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 40886834 - 40886887
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||| ||||||    
T  40886834 cttggttagtgcaatttctccaaaatgaacatgtattttgaaacggatggagta 40886887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 12806891 - 12806853
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  12806891 ttctctaaaatggacaagtattatgaaacggagggagta 12806853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 30720530 - 30720492
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  30720530 ttctctaaaatggacaagtattatgaaacggagggagta 30720492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 36561137 - 36561099
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  36561137 ttctctaaaatggacaagtattatgaaacggagggagta 36561099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 40886648 - 40886610
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  40886648 ttctctaaaatggacaagtattatgaaacggagggagta 40886610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 7277647 - 7277688
Alignment:
Q  217 ttggttactgcaatttctctaaaatggacatgtattttgaaa 258  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||    
T  7277647 ttggttactccaatttctccaaaatagacatgtattttgaaa 7277688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 978105 - 978077
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  978105 tggacatgtattttgaaacggagggagta 978077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 978311 - 978339
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  978311 tggacatgtattttgaaacggagggagta 978339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 8086264 - 8086292
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  8086264 tggacatgtattttgaaacggagggagta 8086292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 9502655 - 9502627
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  9502655 tggacatgtattttgaaacggagggagta 9502627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 14634185 - 14634157
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  14634185 tggacatgtattttgaaacggagggagta 14634157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 33387453 - 33387481
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  33387453 tggacatgtattttgaaacggagggagta 33387481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 99 - 254
Target Start/End: Complemental strand, 19361817 - 19361662
Alignment:
Q  99 tttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttg 198  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  19361817 tttaattaattttggtattggtattgggagtaattattagatggggtaaataaatataaaatggaggaaatcaaagacaagggtataataggaacttttg 19361718  T
Q  199 tgtcaaactagcttgtccttggttactgcaatttctctaaaatggacatgtatttt 254  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19361717 tgtcaaactagcttgtccttggttactgcaatttctccaaaatggacatgtatttt 19361662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 94 - 235
Target Start/End: Complemental strand, 20541640 - 20541495
Alignment:
Q  94 ttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagac----aagggtataatag 189  Q
    |||| |||||||| ||||| |||||||||  ||||||||||||||||| |||||||||||||||||  |||||||| ||||||    |||||||||||||    
T  20541640 ttgactttaattagttttgatattggtatcaggagtaattatgagatgaggtaaataaatgtaaaacagaggaaatcaaagacaagtaagggtataatag 20541541  T
Q  190 gaacttttgtgtcaaactagcttgtccttggttactgcaatttctc 235  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||    
T  20541540 gaacttttgtgtcgaactagtttgtccttggttaatgcaatttctc 20541495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 40122710 - 40122762
Alignment:
Q  217 ttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40122710 ttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 40122762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 14261097 - 14261044
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  14261097 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 14261044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 21310478 - 21310425
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  21310478 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 21310425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 21661759 - 21661812
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  21661759 cttggttactgcaatttctccaaaatggacatgtattttgaaagggagggagta 21661812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 21670523 - 21670576
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  21670523 cttggttactgcaatttctccaaaatggacatgtattttgaaagggagggagta 21670576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 25704704 - 25704651
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  25704704 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 25704651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 34324807 - 34324860
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  34324807 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 34324860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 12071613 - 12071561
Alignment:
Q  217 ttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  12071613 ttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 12071561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 22321491 - 22321544
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||    
T  22321491 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggaaggagta 22321544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 24706471 - 24706524
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||    
T  24706471 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggatggagta 24706524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 31892291 - 31892240
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggag 267  Q
    ||||||||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  31892291 cttggttactgcaatttctttaaaatgaacatgtattttgatacggagggag 31892240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 44568889 - 44568837
Alignment:
Q  217 ttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||| ||||||||||  |||||||||||||||||||||||||| ||||||    
T  44568889 ttggttagtgcaatttcttcaaaatggacatgtattttgaaacggaaggagta 44568837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 262
Target Start/End: Original strand, 19362189 - 19362223
Alignment:
Q  228 aatttctctaaaatggacatgtattttgaaacgga 262  Q
    |||||||||||||||||||||||||||||||||||    
T  19362189 aatttctctaaaatggacatgtattttgaaacgga 19362223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 20249236 - 20249289
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| | |||||| || ||||||||||||||||||||||||||| |||||    
T  20249236 cttggttaatacaatttatccaaaatggacatgtattttgaaacggagagagta 20249289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 12071799 - 12071837
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  12071799 ttctctaaaatggacaagtattatgaaacggagggagta 12071837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 14261283 - 14261321
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  14261283 ttctctaaaatggacaagtattatgaaacggagggagta 14261321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 21310660 - 21310698
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  21310660 ttctctaaaatggacaagtattatgaaacggagggagta 21310698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 24706285 - 24706247
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  24706285 ttctctaaaatggacaagtattatgaaacggagggagta 24706247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 25704890 - 25704928
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  25704890 ttctctaaaatggacaagtattatgaaacggagggagta 25704928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 44569076 - 44569114
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  44569076 ttctctaaaatggacaagtattatgaaacggagggagta 44569114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 50767917 - 50767871
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacgga 262  Q
    |||| ||| |||||||||||||||||| | |||||||||||||||||    
T  50767917 cttgattagtgcaatttctctaaaatgaatatgtattttgaaacgga 50767871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 2760758 - 2760730
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  2760758 tggacatgtattttgaaacggagggagta 2760730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 2760961 - 2760989
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  2760961 tggacatgtattttgaaacggagggagta 2760989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 4467548 - 4467520
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  4467548 tggacatgtattttgaaacggagggagta 4467520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 19433386 - 19433358
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  19433386 tggacatgtattttgaaacggagggagta 19433358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 21661573 - 21661537
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggag 267  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  21661573 ttctctaaaatggacaagtattatgaaacggagggag 21661537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 21670337 - 21670301
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggag 267  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  21670337 ttctctaaaatggacaagtattatgaaacggagggag 21670301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 26170014 - 26169986
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  26170014 tggacatgtattttgaaacggagggagta 26169986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 26170221 - 26170249
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  26170221 tggacatgtattttgaaacggagggagta 26170249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 29830371 - 29830343
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  29830371 tggacatgtattttgaaacggagggagta 29830343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 35381128 - 35381156
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  35381128 tggacatgtattttgaaacggagggagta 35381156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 38416678 - 38416650
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  38416678 tggacatgtattttgaaacggagggagta 38416650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 38416884 - 38416912
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  38416884 tggacatgtattttgaaacggagggagta 38416912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 44232105 - 44232077
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  44232105 tggacatgtattttgaaacggagggagta 44232077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 45292066 - 45292094
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  45292066 tggacatgtattttgaaacggagggagta 45292094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 47386520 - 47386548
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  47386520 tggacatgtattttgaaacggagggagta 47386548  T

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Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 55209602 - 55209574
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  55209602 tggacatgtattttgaaacggagggagta 55209574  T

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Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 55209808 - 55209836
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  55209808 tggacatgtattttgaaacggagggagta 55209836  T

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Target: scaffold1431 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 123 - 176
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||| |||||    
T  123 cttggttagtgcaatttctccaaaatggacatgtattttgaaacggagagagta 176  T

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Target: scaffold1770 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 222 - 170
Alignment:
Q  217 ttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  222 ttggttactgcaatttctccaaagtggatatgtattttgaaacggagggagta 170  T

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Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 45507 - 45454
Alignment:
Q  216 cttggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||  ||||||||||| |||||| ||||||||||||||||||||||||||    
T  45507 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 45454  T

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Target: scaffold0054; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 45692 - 45730
Alignment:
Q  231 ttctctaaaatggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  45692 ttctctaaaatggacaagtattatgaaacggagggagta 45730  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 100675 - 100647
Alignment:
Q  241 tggacatgtattttgaaacggagggagta 269  Q
    |||||||||||||||||||||||||||||    
T  100675 tggacatgtattttgaaacggagggagta 100647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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