View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7116_high_24 (Length: 305)
Name: NF7116_high_24
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7116_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 43344395 - 43344588
Alignment:
| Q |
18 |
acaaggaacaaaagagatagacaaaagggagaagataaagctcctataatttgttcatgtgaccattttttaagagccatttgtttctccaaaaacattt |
117 |
Q |
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| T |
43344395 |
acaaggaacaaaagagatagacaaaagggagaagataaagctcctataatttgttcatgtgaccattttttaagagcca-ttgtttctccaaaaatactt |
43344493 |
T |
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| Q |
118 |
gttgcacttaagagttataggcataacatatatatagcacgtgaccccccaaccaacaagtggagagac-atttaaagagtccatttcttatggat |
212 |
Q |
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| T |
43344494 |
gttgcactt-agagttataggcataacatatatatagcacgtgaccccccaaccaacaagtggagagacaattttaagagtccatttcttatggat |
43344588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 43361312 - 43361405
Alignment:
| Q |
21 |
aggaacaaaagagatagacaaaagggagaagataaagctcctataatttgttcatgtgaccattttttaagagccatttgtttctccaaaaacat |
115 |
Q |
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| T |
43361312 |
aggaagaaaagagatagagaaaagggtgaagaaagagctcctttaatttgttcatgtgaccatattttgagaacca-ttgtttgtccaaacacat |
43361405 |
T |
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