View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7116_high_30 (Length: 251)

Name: NF7116_high_30
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7116_high_30
NF7116_high_30
[»] chr8 (7 HSPs)
chr8 (71-235)||(41306025-41306190)
chr8 (181-235)||(10647018-10647072)
chr8 (181-235)||(45278275-45278329)
chr8 (22-50)||(8697631-8697659)
chr8 (22-50)||(10646884-10646912)
chr8 (22-50)||(40486191-40486219)
chr8 (22-50)||(45278434-45278462)
[»] chr3 (5 HSPs)
chr3 (73-235)||(12095038-12095201)
chr3 (107-235)||(44277038-44277164)
chr3 (145-235)||(19911862-19911952)
chr3 (22-50)||(40931912-40931940)
chr3 (22-50)||(44277188-44277216)
[»] chr2 (1 HSPs)
chr2 (71-235)||(34222321-34222488)
[»] chr7 (4 HSPs)
chr7 (107-235)||(25059713-25059841)
chr7 (181-235)||(2911122-2911176)
chr7 (22-50)||(2911281-2911309)
chr7 (22-50)||(25059866-25059894)
[»] chr1 (7 HSPs)
chr1 (183-235)||(9589357-9589409)
chr1 (180-235)||(3943486-3943541)
chr1 (184-235)||(41959536-41959587)
chr1 (181-235)||(13984664-13984717)
chr1 (22-50)||(3943352-3943380)
chr1 (22-50)||(9588962-9588990)
chr1 (22-50)||(13984725-13984753)
[»] chr4 (1 HSPs)
chr4 (83-165)||(19361816-19361898)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 71 - 235
Target Start/End: Complemental strand, 41306190 - 41306025
Alignment:
Q  71 aaaagagtcttcaaccctttcatattgtatgctgtcaaaagagtcttcaactctttcattgtgcagagattcaactttcacagactttcctttgttttcc 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41306190 aaaagagtcttcaaccctttcatattgtatgctgtcaaaagagtcttcaactctttcattgtgctgagattcaactttcacagactttcctttgttttcc 41306091  T
Q  171 a-nnnnnnnnccggtagttttaattataaaaactcaatttttataaacaaattagagagtccaatt 235  Q
    |         || |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41306090 atttttttttccagtagttttaaatataaaaactcaatttttataaacaaattagagagtccaatt 41306025  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 10647018 - 10647072
Alignment:
Q  181 cggtagttttaattataaaaactcaatttttataaacaaattagagagtccaatt 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10647018 cggtagttttaattataaaaactcaatttttataaacaaattagagagtccaatt 10647072  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 45278329 - 45278275
Alignment:
Q  181 cggtagttttaattataaaaactcaatttttataaacaaattagagagtccaatt 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45278329 cggtagttttaattataaaaactcaatttttataaacaaattagagagtccaatt 45278275  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 8697659 - 8697631
Alignment:
Q  22 caacttctcttatcatgcttcggttatca 50  Q
    |||||||||||||||||||||||||||||    
T  8697659 caacttctcttatcatgcttcggttatca 8697631  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 10646884 - 10646912
Alignment:
Q  22 caacttctcttatcatgcttcggttatca 50  Q
    |||||||||||||||||||||||||||||    
T  10646884 caacttctcttatcatgcttcggttatca 10646912  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 40486219 - 40486191
Alignment:
Q  22 caacttctcttatcatgcttcggttatca 50  Q
    |||||||||||||||||||||||||||||    
T  40486219 caacttctcttatcatgcttcggttatca 40486191  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 45278462 - 45278434
Alignment:
Q  22 caacttctcttatcatgcttcggttatca 50  Q
    |||||||||||||||||||||||||||||    
T  45278462 caacttctcttatcatgcttcggttatca 45278434  T

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Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 73 - 235
Target Start/End: Original strand, 12095038 - 12095201
Alignment:
Q  73 aagagtcttcaaccctttcatattgtatgctgtcaaaagagtcttcaactctttcattgtgcagagattcaactttcacagactttcctttgttttccan 172  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  12095038 aagagtcttcaaccctttcatattgtatgctctcaaaagagtcttcaactctttcgttgtgcagagattcaactttcacagactttcctttgttttccat 12095137  T
Q  173 nnnnnnnc-cggtagttttaattataaaaactcaatttttataaacaaattagagagtccaatt 235  Q
           | | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12095138 tttttttctcagtagttttaattataaaaactcaatttttataaacaaattagagagtccaatt 12095201  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 107 - 235
Target Start/End: Complemental strand, 44277164 - 44277038
Alignment:
Q  107 aaaagagtcttcaactctttcattgtgcagagattcaactttcacagactttcctttgttttccannnnnnnnccggtagttttaattataaaaactcaa 206  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||    
T  44277164 aaaagagtcttcaactctttcattgtgca-agattcaactttcacagactttcctttgttttccatttttttt-cggtagttttaattataaaaactcaa 44277067  T
Q  207 tttttataaacaaattagagagtccaatt 235  Q
    |||||||||||||||||||||||||||||    
T  44277066 tttttataaacaaattagagagtccaatt 44277038  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 19911862 - 19911952
Alignment:
Q  145 ctttcacagactttcctttgttttccannnnnnnnccggtagttttaattataaaaactcaatttttataaacaaattagagagtccaatt 235  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19911862 ctttcacagactttcctttgttttccattttttttccggtagttttaattataaaaaatcaatttttataaacaaattagagagtccaatt 19911952  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 40931912 - 40931940
Alignment:
Q  22 caacttctcttatcatgcttcggttatca 50  Q
    |||||||||||||||||||||||||||||    
T  40931912 caacttctcttatcatgcttcggttatca 40931940  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 44277216 - 44277188
Alignment:
Q  22 caacttctcttatcatgcttcggttatca 50  Q
    |||||||||||||||||||||||||||||    
T  44277216 caacttctcttatcatgcttcggttatca 44277188  T

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Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 71 - 235
Target Start/End: Complemental strand, 34222488 - 34222321
Alignment:
Q  71 aaaagagtcttcaaccctttcatattgtatgctgtcaaaagagtcttcaactctttcattgtgcagagattcaactttcacagactttcctttgttttcc 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  34222488 aaaagagtcttcaaccctttcatattgtatgctgtcaaaagagtcttcaactctttcattgtgcagagattcaagtttcacagattttcctttgttttcc 34222389  T
Q  171 a---nnnnnnnnccggtagttttaattataaaaactcaatttttataaacaaattagagagtccaatt 235  Q
    |            |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34222388 attttttttttctcggtagttttaattataaaaactcaatttttataaacaaattagagagtccaatt 34222321  T

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Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 107 - 235
Target Start/End: Complemental strand, 25059841 - 25059713
Alignment:
Q  107 aaaagagtcttcaactctttcattgtgcagagattcaactttcacagactttcctttgttttccannnnnnnnccggtagttttaattataaaaactcaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||    
T  25059841 aaaagagtcttcaactctttcattgtgcagagattcaactttcacagactttcctttgttttccatttttttttcggtagttttaattataaaaactcaa 25059742  T
Q  207 tttttataaacaaattagagagtccaatt 235  Q
    |||||||||||||||||||||||||||||    
T  25059741 tttttataaacaaattagagagtccaatt 25059713  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 2911176 - 2911122
Alignment:
Q  181 cggtagttttaattataaaaactcaatttttataaacaaattagagagtccaatt 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2911176 cggtagttttaattataaaaactcaatttttataaacaaattagagagtccaatt 2911122  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 2911309 - 2911281
Alignment:
Q  22 caacttctcttatcatgcttcggttatca 50  Q
    |||||||||||||||||||||||||||||    
T  2911309 caacttctcttatcatgcttcggttatca 2911281  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 25059894 - 25059866
Alignment:
Q  22 caacttctcttatcatgcttcggttatca 50  Q
    |||||||||||||||||||||||||||||    
T  25059894 caacttctcttatcatgcttcggttatca 25059866  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 9589357 - 9589409
Alignment:
Q  183 gtagttttaattataaaaactcaatttttataaacaaattagagagtccaatt 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9589357 gtagttttaattataaaaactcaatttttataaacaaattagagagtccaatt 9589409  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 3943486 - 3943541
Alignment:
Q  180 ccggtagttttaattataaaaactcaatttttataaacaaattagagagtccaatt 235  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3943486 ccggtagttttaattataaaaattcaatttttataaacaaattagagagtccaatt 3943541  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 41959536 - 41959587
Alignment:
Q  184 tagttttaattataaaaactcaatttttataaacaaattagagagtccaatt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41959536 tagttttaattataaaaactcaatttttataaacaaattagagagtccaatt 41959587  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 13984717 - 13984664
Alignment:
Q  181 cggtagttttaattataaaaactcaatttttataaacaaattagagagtccaatt 235  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13984717 cggtagttttaattataaaa-ctcaatttttataaacaaattagagagtccaatt 13984664  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 3943352 - 3943380
Alignment:
Q  22 caacttctcttatcatgcttcggttatca 50  Q
    |||||||||||||||||||||||||||||    
T  3943352 caacttctcttatcatgcttcggttatca 3943380  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 9588962 - 9588990
Alignment:
Q  22 caacttctcttatcatgcttcggttatca 50  Q
    |||||||||||||||||||||||||||||    
T  9588962 caacttctcttatcatgcttcggttatca 9588990  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 13984753 - 13984725
Alignment:
Q  22 caacttctcttatcatgcttcggttatca 50  Q
    |||||||||||||||||||||||||||||    
T  13984753 caacttctcttatcatgcttcggttatca 13984725  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 165
Target Start/End: Original strand, 19361816 - 19361898
Alignment:
Q  83 aaccctttcatattgtatgctgtcaaaagagtcttcaactctttcattgtgcagagattcaactttcacagactttcctttgt 165  Q
    ||||||||||||||||||  |||| ||||||||||||||||||||||| |||| |  ||||||||||| ||||||||||||||    
T  19361816 aaccctttcatattgtatattgtcgaaagagtcttcaactctttcattttgcaaatcttcaactttcagagactttcctttgt 19361898  T

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