View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7116_high_4 (Length: 570)

Name: NF7116_high_4
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7116_high_4
NF7116_high_4
[»] chr6 (15 HSPs)
chr6 (11-567)||(11208700-11209256)
chr6 (11-567)||(11169878-11170434)
chr6 (21-555)||(11275272-11275806)
chr6 (270-555)||(11196305-11196575)
chr6 (270-555)||(11160719-11160989)
chr6 (339-555)||(11155921-11156122)
chr6 (339-555)||(11199364-11199565)
chr6 (457-555)||(11315049-11315147)
chr6 (427-555)||(11241739-11241867)
chr6 (349-401)||(11315188-11315240)
chr6 (270-401)||(11241878-11242009)
chr6 (430-500)||(11132721-11132791)
chr6 (287-335)||(11319818-11319866)
chr6 (346-405)||(11132652-11132711)
chr6 (105-153)||(11155693-11155741)
[»] scaffold1207 (1 HSPs)
scaffold1207 (361-555)||(546-740)


Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 11 - 567
Target Start/End: Original strand, 11208700 - 11209256
Alignment:
Q  11 cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacgtggaggaatttcaaactcaaaagatccaag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  11208700 cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacatggaggaatttcaaactcaaaagatcctag 11208799  T
Q  111 caagttgttttccttagttgtttgcctctcaccctcataaacagaaattgataaactattttggttgggttcactggtggtgtatacatgttccatattg 210  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11208800 caagttgttgtccttagttgtttgcctctcaccctcataaacggaaattgataaactattttggttgggttcactggtggtgtatacatcttccatattg 11208899  T
Q  211 gtcggaatcgtggtattcctaggaattattacgctcatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatctt 310  Q
    || ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11208900 gtaggaatcgtggtattcctaggaattattacgctcatgaggccccctttgatattaattccaagggacaaaggattgacttccctcaatgtcaaatctt 11208999  T
Q  311 gaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataactccgtccc 410  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  11209000 gaaacttttcacaaatctcaccacttgctataaaagcatggacagcagcgccatatgcaactgcctcatctgcattgatgcttttacataactccgtccc 11209099  T
Q  411 actgctctttttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttc 510  Q
    ||| |  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  11209100 actaccttttttaattccaaagaaatcaatcaaaagttgttgcacttttacaatcctggtagacccgccaacaagcacaacatcatgaatgttactcttc 11209199  T
Q  511 actatcccactatcttctatacacttttctacactctccatgcaccggccaaaaaga 567  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||    
T  11209200 actatcccactatcttctatacacttttctacaatctccatgcactggtcaaaaaga 11209256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 11 - 567
Target Start/End: Original strand, 11169878 - 11170434
Alignment:
Q  11 cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacgtggaggaatttcaaactcaaaagatccaag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||||||||||||||||||||||||||| ||| ||    
T  11169878 cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag 11169977  T
Q  111 caagttgttttccttagttgtttgcctctcaccctcataaacagaaattgata-aactattttggttgggttcactggtggtgtatacatgttccatatt 209  Q
    ||||||||| ||||||||| |||||||||||||||||||||||  ||| || | |||| ||| |||||  ||||   |||||| ||   | |||| ||||    
T  11169978 caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataact-tttaggttgtcttcagctgtggtgaatgacttttccctatt 11170076  T
Q  210 ggtcggaatcgtggtattcctaggaattattacgctcatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatct 309  Q
    ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11170077 ggtaggaatcgtggtattcctaggaattattacgcccatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatct 11170176  T
Q  310 tgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataactccgtcc 409  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||    
T  11170177 tgaaacttttcacaaatcgcaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctacattgatgtttttacataactccgtcc 11170276  T
Q  410 cactgctctttttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttactttt 509  Q
    |||| | ||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  11170277 cactacccttattaattccaaagaaatcaatcaaacgttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaattttactctt 11170376  T
Q  510 cactatcccactatcttctatacacttttctacactctccatgcaccggccaaaaaga 567  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11170377 cactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaaga 11170434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 21 - 555
Target Start/End: Original strand, 11275272 - 11275806
Alignment:
Q  21 taagatgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacgtggaggaatttcaaactcaaaagatccaagcaagttgttt 120  Q
    |||||||||||||| || |||||||||||||||||| ||||   || || ||  ||||| ||||||||||||||||  ||||| ||| |||||||||||     
T  11275272 taagatgccatcattgtcaatttggaagttgaccaccaattgaggaacatctactggacatggaggaatttcaaacctaaaagttcctagcaagttgttg 11275371  T
Q  121 tccttagttgtttgcctctcaccctcataaacagaaattgataaactattttggttgggttcactggtggtgtatacatgttccatattggtcggaatcg 220  Q
    ||||||||||||| ||||||||||||||||| |  |||||  | |   |||||||| |||  | | |||||| |||| | |||| | ||||| ||||||     
T  11275372 tccttagttgttttcctctcaccctcataaatactaattgcaacaaatttttggttaggtatagttgtggtgaatacttcttccttgttggtaggaatca 11275471  T
Q  221 tggtattcctaggaattattacgctcatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttc 320  Q
    |||||||||| |||| ||||    ||||||   ||| ||   | |||||||||| |||||| ||||| || |||||||||||||||||||||||||||||    
T  11275472 tggtattcctgggaaatattgttttcatgattccccattgtgttttaattccaatggacaatggattaacttccctcaatgtcaaatcttgaaacttttc 11275571  T
Q  321 acaaatcacaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataactccgtcccactgctcttt 420  Q
    ||||| | |||||||   |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||   ||      
T  11275572 acaaagctcaccactcaatataaaagcatggatagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataacttcgtcctgctatgctca 11275671  T
Q  421 ttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccac 520  Q
    |||||| | |||||||||| |||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||   ||||||||    
T  11275672 ttaatttcaaagaaatcaaccaaaaggtcttgcacttttacaatcctggtagacccgccaacaagcacaacatcatgaatgttactcttgtttatcccac 11275771  T
Q  521 tatcttctatacacttttctacactctccatgcac 555  Q
    ||||| ||||||||||||||||| | |||||||||    
T  11275772 tatctgctatacacttttctacaatttccatgcac 11275806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 270 - 555
Target Start/End: Original strand, 11196305 - 11196575
Alignment:
Q  270 tccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgca 369  Q
    |||||||||||||||| |||| |||  ||||   |||||||||| ||| |||| || | |||||||   |||| |||||||||||||||||||||||||     
T  11196305 tccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatgcc 11196404  T
Q  370 accgcctcatctgcattgatgcttttgcataactccgtcccactgctctttttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctgg 469  Q
    |||||||||||  |||||||||||||||||||   | |||| |               ||||||||||| |||  | ||||||||||||||||||||| |    
T  11196405 accgcctcatcgacattgatgcttttgcataaaagcttccccc---------------cgaagaaatcactcaccatttgttgcacttttacaatcctag 11196489  T
Q  470 tagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac 555  Q
    |||||||||||||||| ||||||||||||||| |||| ||  | |||||||||||   |||||||||||| ||| |||||||||||    
T  11196490 tagagccgccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatctccatgcac 11196575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 270 - 555
Target Start/End: Original strand, 11160719 - 11160989
Alignment:
Q  270 tccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgca 369  Q
    |||||||||||||||| |||| |||  ||||   |||||||||| ||| |||| |  | |||||||   |||| |||||||||||||||||||||||||     
T  11160719 tccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactacgctcaccactcaatatagaagcatggacagcagcgccatatgcc 11160818  T
Q  370 accgcctcatctgcattgatgcttttgcataactccgtcccactgctctttttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctgg 469  Q
    || ||||||||  |||||||||||||||||||   | |||| |               ||||||||||| |||  | ||||||||||||||||||||| |    
T  11160819 actgcctcatcgacattgatgcttttgcataaaagcttccccc---------------cgaagaaatcactcaccatttgttgcacttttacaatcctag 11160903  T
Q  470 tagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac 555  Q
    ||||||| |||||||| ||||||||||||||| |||| ||  | |||||||||||   |||||||||||||||| |||||||||||    
T  11160904 tagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttctacaatctccatgcac 11160989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 339 - 555
Target Start/End: Original strand, 11155921 - 11156122
Alignment:
Q  339 tataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataactccgtcccactgctctttttaattccgaagaaatca 438  Q
    |||| ||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||   | |||| |               |||||||||||    
T  11155921 tatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataaaagcttccccc---------------cgaagaaatca 11156005  T
Q  439 atcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacactttt 538  Q
     |||  | |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||  | |||||||||||   |||||||||||    
T  11156006 ctcaccatttgttgcacttttacaatcctggtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacactttt 11156105  T
Q  539 ctacactctccatgcac 555  Q
    | ||| |||||||||||    
T  11156106 ccacaatctccatgcac 11156122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 339 - 555
Target Start/End: Original strand, 11199364 - 11199565
Alignment:
Q  339 tataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataactccgtcccactgctctttttaattccgaagaaatca 438  Q
    |||| ||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||   | |||| |               |||||||||||    
T  11199364 tatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataaaagcttccccc---------------cgaagaaatca 11199448  T
Q  439 atcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacactttt 538  Q
     |||  | ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||| ||  | |||||||||||   |||||||||||    
T  11199449 ctcaccatttgttgcacttttacaatcctagtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacactttt 11199548  T
Q  539 ctacactctccatgcac 555  Q
    ||||| |||||||||||    
T  11199549 ctacaatctccatgcac 11199565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 457 - 555
Target Start/End: Complemental strand, 11315147 - 11315049
Alignment:
Q  457 tttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac 555  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||| || || ||||||||||| |||| ||||||||||||| ||| |||||||    
T  11315147 tttacaatcctagtagagccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcctctagacacttttctacaatcttcatgcac 11315049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 427 - 555
Target Start/End: Complemental strand, 11241867 - 11241739
Alignment:
Q  427 ccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatctt 526  Q
    |||||||||||| |||  | |||||||||||||||||||||  ||||||| |||||||| ||||||||||||||| |||| ||  | |||||||||||      
T  11241867 ccgaagaaatcactcaccatttgttgcacttttacaatcctaatagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaa 11241768  T
Q  527 ctatacacttttctacactctccatgcac 555  Q
     |||||||||||| ||| |||||||||||    
T  11241767 ttatacacttttccacaatctccatgcac 11241739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 11315240 - 11315188
Alignment:
Q  349 tggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataa 401  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  11315240 tggacagcagcgccatatgcaaccgccttatcagcattgatgcttttgcataa 11315188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 270 - 401
Target Start/End: Complemental strand, 11242009 - 11241878
Alignment:
Q  270 tccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgca 369  Q
    |||||||||||||| | |||| |||  ||||   |||||||||| ||| |||| || | |||||||   |||| ||||||||||| |||||||||||||     
T  11242009 tccaagggacaaagaaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacaacagcgccatatgcc 11241910  T
Q  370 accgcctcatctgcattgatgcttttgcataa 401  Q
    || ||||||||  |||||||||||||||||||    
T  11241909 acagcctcatcgacattgatgcttttgcataa 11241878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 430 - 500
Target Start/End: Original strand, 11132721 - 11132791
Alignment:
Q  430 aagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaat 500  Q
    ||||||||| |||| | |||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  11132721 aagaaatcactcaatatttgttgtacttttacaatcctcgtagacccgccaacaaggacaacatcatgaat 11132791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 11319866 - 11319818
Alignment:
Q  287 tgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccact 335  Q
    |||| |||||||||||||||||||||||||||||||||| | |||||||    
T  11319866 tgacttccctcaatgtcaaatcttgaaacttttcacaaaactcaccact 11319818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 405
Target Start/End: Original strand, 11132652 - 11132711
Alignment:
Q  346 gcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataactcc 405  Q
    |||||||||||||| ||| ||||||  || ||||||||||| ||||||||||||||||||    
T  11132652 gcatggacagcagcaccacatgcaatagcttcatctgcatttatgcttttgcataactcc 11132711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 11155693 - 11155741
Alignment:
Q  105 tccaagcaagttgttttccttagttgtttgcctctcaccctcataaaca 153  Q
    ||||||||||||||||||| ||||| ||| ||||||||| |||||||||    
T  11155693 tccaagcaagttgttttccctagttattttcctctcaccttcataaaca 11155741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 361 - 555
Target Start/End: Original strand, 546 - 740
Alignment:
Q  361 ccatatgcaaccgcctcatctgcattgatgcttttgcataactccgtcccactgctctttttaattccgaagaaatcaatcaaaagttgttgcactttta 460  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||   ||  |||||| | |||||||||| ||||||   ||| |||||||    
T  546 ccatatgcaaccgcctcatctgcattgatgcttttgcataacttcgtcctactatgctcattaatttcaaagaaatcaaccaaaaggccttgaactttta 645  T
Q  461 caatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac 555  Q
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T  646 caatccttgtagagccgccaacaaggacaacatcatgaaagttactcttgtttatcccactatctgctatacagttttctacactctccatgcac 740  T

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