View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7116_high_5 (Length: 560)
Name: NF7116_high_5
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7116_high_5 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 16 - 541
Target Start/End: Complemental strand, 22696861 - 22696337
Alignment:
| Q |
16 |
ttggtgttgagttgggaggcgaaatgttcactgtctctttcttgtgtggtggtgagttcaggggtgtggcgatgatgatgatgaggagcttgtgggttgt |
115 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
22696861 |
ttggtgtttagctgggaggcgaaatgttcactgtctctttcttgtgtggtggtgagtttgggggtgtggcgatgatcatgatgatgagcttgtgggttgt |
22696762 |
T |
|
| Q |
116 |
gttgtgttttggtggttttgtgatcttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgtt |
215 |
Q |
| |
|
||| |||| || |||||||||| ||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
22696761 |
gttctgtt--gggagttttgtgattttcttccttgcgggtgctgagtttgcggctgttagaaaaacacaggttatctggtgtttatgtgtggtggttgtt |
22696664 |
T |
|
| Q |
216 |
tccttccgatccatatctatgtggaggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttca |
315 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
22696663 |
tccttccgatccagatctatgtggaggaggtgatggtggtgcaaggtggtgatgtaggccacgtttttg-gtggtgtgaggaggtgctggtgggtcttca |
22696565 |
T |
|
| Q |
316 |
acggttgggttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtgga- |
414 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||| ||||||||||||||||||||| |
|
|
| T |
22696564 |
acggttgggttcgatcataaccttttcatccggttcgactactctattatctggtggtttgtcgatatggatcgatggtgttgctgctgtgaaggtggat |
22696465 |
T |
|
| Q |
415 |
-ttgttgttgagttggttgttgttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatcgttatact |
513 |
Q |
| |
|
||||||||||| ||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22696464 |
tttgttgttgagctggttgttgttacaaaagtggattcgttaagatgacatcaattgtttttgtggcgaaggtggttgtcgttgtttcaatcgttatact |
22696365 |
T |
|
| Q |
514 |
taccggttgtttttcaaaggttattggt |
541 |
Q |
| |
|
||| ||||| |||||||||||||||||| |
|
|
| T |
22696364 |
tacaggttggttttcaaaggttattggt |
22696337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 98 - 413
Target Start/End: Original strand, 34502837 - 34503149
Alignment:
| Q |
98 |
gaggagcttgtgggttgtgttgtgttttggtggttttgtgatcttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgt |
197 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||||||| ||||||||||||| || ||||||||||| |||||| |||||||| ||| ||| ||| |
|
|
| T |
34502837 |
gaggagcttgtgggttgtgttgtgtt--ggggattttgtgattttcttccttgcgggtgctgagtttgcggttgttagtaaaacacaggttgtctgttgt |
34502934 |
T |
|
| Q |
198 |
ttatgtgtggtggttgtttccttccgatccatatctatgtggaggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgagga |
297 |
Q |
| |
|
|| |||||||| ||||||||||||| ||||| ||||| ||||||||||||| ||||||| |||||| |||||||| |||| ||||| |||||| |
|
|
| T |
34502935 |
ttttgtgtggtcgttgtttccttccaatccagatctacatggaggaggtgatcgtggtgtgaggtggagatgtaggtcacg-tttttggtggtatgagga |
34503033 |
T |
|
| Q |
298 |
ggtgccggtgggtcttcaacggttgggttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgtt |
397 |
Q |
| |
|
||| ||||||||||||||||||||| |||||| |||||||| | | || ||||||||||||| |||||| |||||||| ||||||||| |||| |||| |
|
|
| T |
34503034 |
agtgtcggtgggtcttcaacggttggtttcgataagaaccttctaagcctgttcgactactctgttatctggtggtttgctgatgtggatcgatggtgtt |
34503133 |
T |
|
| Q |
398 |
gctgctgtgaaggtgg |
413 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
34503134 |
gcagctgtgaaggtgg |
34503149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 341 - 535
Target Start/End: Original strand, 24045613 - 24045816
Alignment:
| Q |
341 |
tcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtgga--ttgttgttgagttg------gttg |
432 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||| | ||||| |||||| |||||| |||||||||||| ||||||||| | || |||| |
|
|
| T |
24045613 |
tcatccggttcgactactctgttatctggtggtttgtccgtatggatcgatgatattgctgttgtgaaggtggattttgttgttgcgctggttgttgttg |
24045712 |
T |
|
| Q |
433 |
ttgttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtg---gttgtcgttgtttcaatcgttatacttaccggttgtttttca |
529 |
Q |
| |
|
|||||| || ||||||||| ||||| || ||||||||||| |||||||||||||| ||||| |||||||||||||| || |||| |||||||||||| |
|
|
| T |
24045713 |
ttgttgcaacggtggattcattaaggtgtcatcgattgttgttgtggcgaaggtggttgttgttgttgtttcaatcgt--tagttactggttgtttttca |
24045810 |
T |
|
| Q |
530 |
aaggtt |
535 |
Q |
| |
|
|||||| |
|
|
| T |
24045811 |
aaggtt |
24045816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 34502737 - 34502814
Alignment:
| Q |
20 |
tgttgagttgggaggcgaaatgttcactgtctctttcttgtgtggtggtgagttcaggggtgtggcgatgatgatgatga |
99 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
34502737 |
tgttgagttgggaggcgaa--gtttactgtctctttcttctgtggtggtgagtttgagggtgtggagatgatgatgatga |
34502814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 338 - 524
Target Start/End: Complemental strand, 14287664 - 14287470
Alignment:
| Q |
338 |
ttttcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtggatt--gttgttg----agttg--g |
429 |
Q |
| |
|
||||||||| ||| ||||||| ||||| |||||||||| ||||| || ||| |||||||||| |||||||||||| ||||||| ||||| | |
|
|
| T |
14287664 |
ttttcatccagtttgactacttcgttatcgggtggtttgtcaatgtgaatcaatggtgttgctgctatgaaggtggattttgttgttgcaccagttgttg |
14287565 |
T |
|
| Q |
430 |
ttgttgttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatcgttatacttaccggttgtt |
524 |
Q |
| |
|
||||||| ||||||| |||||||||| |||||||||| ||||||||||| ||||||| ||||||||||||||||| |||| ||||||| |
|
|
| T |
14287564 |
ttgttgtaccaaaggtgaattcgttaagggtgcatcgattgtagttgtggcgaagatggttgttgttgtttcaatcgttattgttactggttgtt |
14287470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 525
Target Start/End: Original strand, 34503198 - 34503239
Alignment:
| Q |
484 |
ggtggttgtcgttgtttcaatcgttatacttaccggttgttt |
525 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
34503198 |
ggtggttgttgttgtttcaatcgttatagataccggttgttt |
34503239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 124 - 541
Target Start/End: Complemental strand, 25499050 - 25498631
Alignment:
| Q |
124 |
ttggtggttttgtgatcttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgtttccttccg |
223 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
25499050 |
ttgggggttttgtgatcttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctggtgtttatgcgtggtggttgtttccttccg |
25498951 |
T |
|
| Q |
224 |
atccatatctatgtggaggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttcaacggttgg |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25498950 |
atccatatctatgtggaggaggtgatggtggtgtaaggtggtgatgtaggccacatttttttgtggtgtgaggaggtgtcggtgggtcttcaacggttgg |
25498851 |
T |
|
| Q |
324 |
gttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtgga--ttgttgt |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
25498850 |
tttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgttgtgaaggtggattttgttgt |
25498751 |
T |
|
| Q |
422 |
tgagttggttgttgttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatcgttatacttaccggtt |
521 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25498750 |
tgagctggttgttgttgtaaaggtggattcgttaagatgacatcaattgtttttgtggcgaaggtggttgtcgttgtttcaatcgttatacttaccggtt |
25498651 |
T |
|
| Q |
522 |
gtttttcaaaggttattggt |
541 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
25498650 |
gtttttcaaaggttattggt |
25498631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 535
Target Start/End: Complemental strand, 49358874 - 49358364
Alignment:
| Q |
15 |
tttggtgttgagttgggaggcgaaatgttcactgtctctttcttgtgtggtggtgagttcaggggtgtggcgatgatgatgatgaggagcttgtgggttg |
114 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49358874 |
tttggtgttgaggtggaaggcgaaatgttcactgtctctttcttgtgtggcggtgagttcaggggtgtggcgatgatgatgatgaggagcttgtgggttg |
49358775 |
T |
|
| Q |
115 |
tgttgtgttttggtggttttgtgatcttcttccttgcggatgttgagtttgcggctgttagaaaaa-cacaagttatctagtgtttatgtgtggtggttg |
213 |
Q |
| |
|
|||||||||| | ||||||||||| ||||||| |||||| ||||||||||| |||||||| |||||||||| ||||||||||||| |
|
|
| T |
49358774 |
tgttgtgttt--ggggttttgtgattttcttcc---------------ttgcgggtgttagaaaaagcacaagttgtctagtgtttttgtgtggtggttg |
49358692 |
T |
|
| Q |
214 |
tttccttccgatccatatctatgtggaggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtctt |
313 |
Q |
| |
|
||||||| ||| ||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| || ||||| ||||||||||| |
|
|
| T |
49358691 |
tttcctttcga-------ctatgtggaggaggttatggtggtgtgaggtggtgatgtaggccacg-ttttttgtggtgttagaaggtgtcggtgggtctt |
49358600 |
T |
|
| Q |
314 |
caacggttgggttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtgg |
413 |
Q |
| |
|
||| ||||||||||||||||||||| || || | |||||||||||| |||||| |||| |||||||| |||||||||| |||||||| || |||||||| |
|
|
| T |
49358599 |
caatagttgggttcgatcagaaccttctcgtctgattcgactactctgttatctggtggattgtcgatatggattgatggtgttgctgatgcgaaggtgg |
49358500 |
T |
|
| Q |
414 |
a--ttgttgttgagttg------------gttgttgttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtt |
499 |
Q |
| |
|
| ||||||||| |||| |||||||||| ||| ||| || ||||| ||||||| |||||| ||||||||||||||||||| |||||| |
|
|
| T |
49358499 |
attttgttgttgcgttggttgttgttgttgttgttgttgcaaaaatggttttgttaacgtgacatcaattgttgttgtggcgaaggtggttgttgttgtt |
49358400 |
T |
|
| Q |
500 |
tcaatcgttatacttaccggttgtttttcaaaggtt |
535 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||||||| |
|
|
| T |
49358399 |
ccaatccttatagttatcggttgtttttcaaaggtt |
49358364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 141 - 541
Target Start/End: Original strand, 51056695 - 51057104
Alignment:
| Q |
141 |
ttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgtttccttccgatccatatctatgtgga |
240 |
Q |
| |
|
||||||||| | | || ||||||||||| |||||||| |||||| ||| ||| |||||| ||| ||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
51056695 |
ttcttccttacaggtgctgagtttgcggttgttagaacaacacaggttgtctggtgtttttgtatggtggttgtttccttctgatccagatctatgtgga |
51056794 |
T |
|
| Q |
241 |
ggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttt |
340 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||| ||||||||| |||||| |
|
|
| T |
51056795 |
ggaggtgatggtggtgtgaggtggcgatgtaggccac-atttttggtggtgtgaggaggtgttggtgg-tcttcaacggttgagttcgatcataaccttc |
51056892 |
T |
|
| Q |
341 |
tcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtggatt--gttgttgagttggttgttgttg |
438 |
Q |
| |
|
||| ||| || || |||| | |||||| ||||||||||||||||||| || |||||| |||| ||||||||||||| ||||||| | |||||||||||| |
|
|
| T |
51056893 |
tcacccgatttgattactatgttatctggtggtttgtcgatgtggatcgacgatgttactgcagtgaaggtggattttgttgttgcgctggttgttgttg |
51056992 |
T |
|
| Q |
439 |
g---------aaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatcgttatacttaccggttgtttttca |
529 |
Q |
| |
|
| |||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
51056993 |
ttgttgttgcagaggtggattcgttaaggtgacatcgattgttgttgtggcgaaggtggttgttgttgtttcaatcgttattgttaccggttgtttttca |
51057092 |
T |
|
| Q |
530 |
aaggttattggt |
541 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
51057093 |
aaggttgttggt |
51057104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 211 - 541
Target Start/End: Complemental strand, 38258947 - 38258614
Alignment:
| Q |
211 |
ttgtttccttccgatccatatctatgtggaggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggt |
310 |
Q |
| |
|
|||||| ||||||||||| ||||||||| ||||||| ||||||||| |||||||||||||||||||| |||||| ||| |||||||||||||| |
|
|
| T |
38258947 |
ttgttttcttccgatccagatctatgtgaaggaggttttggtggtgtgaggtggtgatgtaggccacgtttttg-gtggtgcgag-aggtgccggtgggt |
38258850 |
T |
|
| Q |
311 |
cttcaacggttgggttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaagg |
410 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| |||||| | |||| ||||| |||| |||||| |
|
|
| T |
38258849 |
cctcaacggttgggttcgatcagaaccttctcatccggttcgactaccctattatctggtggtttgtctatgtgggtcgatggtgttgatgctatgaagg |
38258750 |
T |
|
| Q |
411 |
tgga--ttgttgttgagttggttg------ttgttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttca |
502 |
Q |
| |
|
|||| ||||||||| | |||||| |||||| ||| ||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
38258749 |
tggattttgttgttgtgctggttgttgttattgttgtaaatgtggatttgttaaggtgacatcgattgttgttgtggcgaaggtggtt---gttgtttca |
38258653 |
T |
|
| Q |
503 |
atcgttatacttaccggttgtttttcaaaggttattggt |
541 |
Q |
| |
|
|| |||||| ||| |||||||| |||||||||| ||||| |
|
|
| T |
38258652 |
attgttatagttatcggttgttcttcaaaggttgttggt |
38258614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 237 - 318
Target Start/End: Original strand, 17113683 - 17113763
Alignment:
| Q |
237 |
tggaggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttcaacg |
318 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |
|
|
| T |
17113683 |
tggaggaggtgatggtggtgtgaggtggtgatgtaggccacgtttttta-tggtgtgaggaggtgtcggtggatcttcaacg |
17113763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 503
Target Start/End: Original strand, 17113764 - 17113928
Alignment:
| Q |
354 |
ctactctattatctagtggtttgtcgatgtg----gattgatgatgttgctgctgtgaaggtgga--ttgttgttgagttg---------gttgttgttg |
438 |
Q |
| |
|
||||||| |||||| |||||||||||||||| ||| |||| ||||||||||||||| ||||| ||||||||| | || |||||||||| |
|
|
| T |
17113764 |
ctactctgttatctggtggtttgtcgatgtggatcgatcgatggtgttgctgctgtgaaagtggattttgttgttgcgctggttgttgttgttgttgttg |
17113863 |
T |
|
| Q |
439 |
gaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaa |
503 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| ||||||| || ||||| | |||||||||| |
|
|
| T |
17113864 |
caaaggtgaattcgttaaagtgacatcgattgttgttgtggcagagatggttattgttgtttcaa |
17113928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 541
Target Start/End: Original strand, 32946684 - 32947197
Alignment:
| Q |
20 |
tgttgagttgggaggcgaaatgttcactgtctctttcttgtgtggtggtgagttcaggggtgtggcgatgatgatgatgaggagcttgtgggttgtgttg |
119 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| || |||||| ||||||| ||| |||||||||||| |
|
|
| T |
32946684 |
tgttgatttgggaggcgaaatgttcaccgtct--ttcttgtgtggtggtgagttcgtgggtgtggtgacgatgattatgaggatcttttgggttgtgttg |
32946781 |
T |
|
| Q |
120 |
tgttttggtggttttgtgatcttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgtttcct |
219 |
Q |
| |
|
|||| || ||||||||||| ||||||||||||| || | ||||||| ||||||||||||||||| ||| ||| |||||| ||||||||||||||||||| |
|
|
| T |
32946782 |
tgttg-ggaggttttgtgattttcttccttgcgggtgctaagtttgcagctgttagaaaaacacaggttgtctggtgtttttgtgtggtggttgtttcct |
32946880 |
T |
|
| Q |
220 |
tccgatccatatctatgtggaggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttcaacgg |
319 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
32946881 |
tctgatccaaatctatgtggaggaggtgatggtggtgtaaggtggtgatgtaggccac-atttttggtggtgtgaggaggtgtcgatgggtcttcaacgg |
32946979 |
T |
|
| Q |
320 |
ttgggttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtgga----- |
414 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| || ||||||| ||||||||||| | |
|
|
| T |
32946980 |
ttgggttcgatcagaaccttctcatccggttcgactactctattatcta----------gatgtggattgttggtgttgctcctgtgaaggtgtattaat |
32947069 |
T |
|
| Q |
415 |
-ttgttgttgagttggttgttgttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatcgttatact |
513 |
Q |
| |
|
||||||||| | |||||||||||| |||||||||||||||||| ||||||| |||||| ||||||||||||||||||| |||||||||||| ||||| | |
|
|
| T |
32947070 |
tttgttgttgcgctggttgttgttgcaaaggtggattcgttaaggtgacatcaattgttgttgtggcgaaggtggttgttgttgtttcaatcattatagt |
32947169 |
T |
|
| Q |
514 |
taccggttgtttttcaaaggttattggt |
541 |
Q |
| |
|
||| ||||| |||||||||||| ||||| |
|
|
| T |
32947170 |
tactggttgcttttcaaaggttgttggt |
32947197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 286 - 535
Target Start/End: Complemental strand, 27109898 - 27109638
Alignment:
| Q |
286 |
gtggtgtgaggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgtgg |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
27109898 |
gtggtgtgaggaggtgccggtgggtcttcaacggtttggttcgatcagaacattctcatccggttcgactactctgttatctggtggtttgtcgatgtgg |
27109799 |
T |
|
| Q |
386 |
attgatgatgttgctgctgtgaaggtgga--ttgttgttgagttg---------gttgttgttggaaaggtggattcgttaagatgacatcgattgtttt |
474 |
Q |
| |
|
|| |||| ||||||||||||||||||||| ||||||||| | || |||||| ||| ||||||||||| | |||| ||| |||||||||| | |
|
|
| T |
27109798 |
atcgatggtgttgctgctgtgaaggtggattttgttgttgcgctggatgttgttgttgttattgcaaaggtggatttgctaaggtgagatcgattgttgt |
27109699 |
T |
|
| Q |
475 |
tgtggcgaaggtggttgtcgttgtttcaatcgttatacttaccggttgtttttcaaaggtt |
535 |
Q |
| |
|
||||| |||||||||||| ||||||||||| ||||| ||| |||| |||||||||||||| |
|
|
| T |
27109698 |
tgtggtgaaggtggttgttgttgtttcaattgttattgttatcggtggtttttcaaaggtt |
27109638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 36057716 - 36057791
Alignment:
| Q |
141 |
ttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgttt |
216 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||| ||| |||||| |||||| ||||||||| |
|
|
| T |
36057716 |
ttcttccttgtggatgctgagtttgcggctgttagaaaaacacaagttgtctggtgtttttgtgtgatggttgttt |
36057791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 36058844 - 36058919
Alignment:
| Q |
141 |
ttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgttt |
216 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||| ||| |||||| |||||| ||||||||| |
|
|
| T |
36058844 |
ttcttccttgtggatgctgagtttgcggctgttagaaaaacacaagttgtctggtgtttttgtgtgatggttgttt |
36058919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 413 - 499
Target Start/End: Complemental strand, 39629570 - 39629481
Alignment:
| Q |
413 |
gattgttgttgagttggttgttgttgg---aaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtt |
499 |
Q |
| |
|
||||||||||| |||||||||||||| |||| |||||||||||| ||| |||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
39629570 |
gattgttgttgtgttggttgttgttgttgcaaagatggattcgttaacgtgatatcgattgttgttgtggcgaaggtggttgttgttgtt |
39629481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 535
Target Start/End: Original strand, 36607637 - 36608159
Alignment:
| Q |
15 |
tttggtgttgagttgggaggcgaaatgttcactgtctctttcttgtgtggtggtgagttcaggggtgtggcgatgatgatgatgaggagcttgtgggttg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||| | |||||||| ||||||||| |||||||||||| |||||||| ||||||| |
|
|
| T |
36607637 |
tttggtgttgagttgggaggcgaaatgttcaatgtctctttctcgtgtgatagtgagttcgggggtgtggtgatgatgatgataaggagcttatgggttg |
36607736 |
T |
|
| Q |
115 |
tgttgtgttttggtggttttgtgatcttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgt |
214 |
Q |
| |
|
||||||| |||| | ||||||||| |||||||||||| | | ||||||| |||||||||||||||||| ||| ||| ||||| || |||||||||| |
|
|
| T |
36607737 |
tgttgtg--ttggggtttttgtgattgtcttccttgcgggtatggagtttgtggctgttagaaaaacacaggttgtctgatgtttttgcttggtggttgt |
36607834 |
T |
|
| Q |
215 |
ttccttccgatccatatctatgtggaggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttc |
314 |
Q |
| |
|
|||||||| ||||| || |||||||||||| |||||||||||| ||||||||||||||||||| || |||||||||| || ||||| |||||| |
|
|
| T |
36607835 |
ttccttccaatccagatttatgtggaggagttgatggtggtgtgaggtggtgatgtaggccac-attttttgtagtgtgaggagatgtcggtgagtcttc |
36607933 |
T |
|
| Q |
315 |
aacggttgggttcgatcagaaccttttcatccggttcgactactcta-ttatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtgg |
413 |
Q |
| |
|
|| || |||||||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||||| |||| ||||| || ||||||||||| |
|
|
| T |
36607934 |
aatgg-tgggttcgatcagaaccttttcatccagttcgactactctatttttccggtggtttgtcgatgtggatcgatggtgttgttgttgtgaaggtgg |
36608032 |
T |
|
| Q |
414 |
a--ttgttgttgagttg---gttgttgttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatcgtt |
508 |
Q |
| |
|
| ||||||||| | || |||||||||| |||||||||||||||||| || ||| ||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36608033 |
attttgttgttgcgctggttgttgttgttgcaaaggtggattcgttaaggtgtcattgattgttgttgtggcgaaggtggttgttgttgtttcaatcgtt |
36608132 |
T |
|
| Q |
509 |
atacttaccggttgtttttcaaaggtt |
535 |
Q |
| |
|
||| |||| |||||||||||||||||| |
|
|
| T |
36608133 |
atagttactggttgtttttcaaaggtt |
36608159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 16 - 533
Target Start/End: Original strand, 27631972 - 27632484
Alignment:
| Q |
16 |
ttggtgttgagttgggaggcgaaatgttcactgtctctttcttgtgtggtggtgagttcaggggtgtggcgatgatgatgatgaggagcttgtgggttgt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||| | ||||||||| |||||||| |
|
|
| T |
27631972 |
ttggtgttgagttgggaggcgaaatgttcattgtctctttcttgtgt----------tcgggggtgtggcgatgatgattaggaggagcttatgggttgt |
27632061 |
T |
|
| Q |
116 |
gttgtgttttggtggttttgtgatcttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgtt |
215 |
Q |
| |
|
|||||||| || | ||||||||| ||||| ||||||| || |||||||||||||||||||||| |||||||| | | |||||| ||||||||||||||| |
|
|
| T |
27632062 |
gttgtgtt--ggggattttgtgattttctttcttgcgggtgctgagtttgcggctgttagaaaagcacaagttgtttggtgtttttgtgtggtggttgtt |
27632159 |
T |
|
| Q |
216 |
tccttccgatccatatctatgtggaggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttca |
315 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||| ||||||| | ||||||||||||||| |||| |||||||||||||||| ||||||||||||| |
|
|
| T |
27632160 |
tccttccgatccagatctgtgtagaggaggtgctggtggtatgaggtggtgatgtaggtcacg-ttttttgtggtgtgaggaggtgtcggtgggtcttca |
27632258 |
T |
|
| Q |
316 |
acggttgggttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtgga- |
414 |
Q |
| |
|
|||| |||||| ||| |||| ||| | ||| |||| ||||||| | |||| | |||||||| |||||||||| |||| | |||||| |||||| ||||| |
|
|
| T |
27632259 |
acgggtgggtttgattagaatcttctaatctggtttgactactatgttatatggtggtttgccgatgtggatcgatggtattgctgttgtgaaagtggat |
27632358 |
T |
|
| Q |
415 |
-ttgttgttgagttggttgttgttg--gaaagg----tggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatcgt |
507 |
Q |
| |
|
||||||| | |||||||||||| |||| ||||||| ||||| |||||||||||||| ||||||| ||||||||||| |||||||||||||| |
|
|
| T |
27632359 |
tttgttgtgacgctggttgttgttgtttcaaggtggatggattcattaaggtgacatcgattgttgttgtggcaaaggtggttgttgttgtttcaatcgt |
27632458 |
T |
|
| Q |
508 |
tatacttaccggttgtttttcaaagg |
533 |
Q |
| |
|
|||| |||| ||||||||||||||| |
|
|
| T |
27632459 |
tatagttacatgttgtttttcaaagg |
27632484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 141 - 510
Target Start/End: Complemental strand, 9436611 - 9436232
Alignment:
| Q |
141 |
ttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgtttccttccgatccatatctatgtgga |
240 |
Q |
| |
|
||||||||||||| || ||||||||||||| ||||||||||||| ||| |||||||||| ||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
9436611 |
ttcttccttgcgggtgctgagtttgcggctcttagaaaaacacatgttttctagtgtttttgtgtggtgtatgtttccttccgatccagatctatgtgga |
9436512 |
T |
|
| Q |
241 |
ggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttt |
340 |
Q |
| |
|
|||||| |||| ||||| ||||||||||||| ||||| |||||||||||||||| ||||||||||||||||| || |||| |||| |||||| |
|
|
| T |
9436511 |
ggaggtaatgggggtgtgaggtggtgatgtaagccac-attttttgtggtgtgaggaggtgtcggtgggtcttcaacggctgagttcaatcaaaaccttc |
9436413 |
T |
|
| Q |
341 |
tcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtgga--ttgttgttgagttg---------g |
429 |
Q |
| |
|
||||| ||||||| |||||| |||||||||||||||||||||||||| |||| ||||| || | |||||||||| ||||||||| | || | |
|
|
| T |
9436412 |
tcatctggttcgattactctgttatctagtggtttgtcgatgtggatcgatggtgttgatggtttgaaggtggattttgttgttgcgctggttgttgttg |
9436313 |
T |
|
| Q |
430 |
ttgttgttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatcgttat |
510 |
Q |
| |
|
||||||||| ||| ||| ||||||||| |||||||||||||| ||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
9436312 |
ttgttgttgcaaaagtgagttcgttaaggtgacatcgattgttgttgcggcgaaggtggttgttgttgtttcaatcgttat |
9436232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 158 - 436
Target Start/End: Complemental strand, 33758343 - 33758066
Alignment:
| Q |
158 |
tgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgtttccttccgatccatatctatgtggaggaggtgatggtggtgt |
257 |
Q |
| |
|
|||||||||||| |||||||||||||| ||| ||| |||||| ||||||||| ||||||||||||||||| |||| |||||| |||||||||||||||| |
|
|
| T |
33758343 |
tgagtttgcggccgttagaaaaacacaggttgtctggtgttttagtgtggtggatgtttccttccgatccagatctttgtggatgaggtgatggtggtgt |
33758244 |
T |
|
| Q |
258 |
aaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttttcatccggttcgactac |
357 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
33758243 |
gaggtggtgatgtaggccac-atttttggtggtgtgaggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttctcatccagttcgacta- |
33758146 |
T |
|
| Q |
358 |
tctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtggatt--gttgttgagttggttgttgt |
436 |
Q |
| |
|
|| |||||| |||||||||||||||||| |||| |||||| | ||||| |||||||| ||||||| |||| ||||||| |
|
|
| T |
33758145 |
-ctgttatctgatggtttgtcgatgtggatcgatggtgttgccgttgtgatggtggatttggttgttgcgttgattgttgt |
33758066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 429 - 505
Target Start/End: Complemental strand, 33758027 - 33757951
Alignment:
| Q |
429 |
gttgttgttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatc |
505 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
33758027 |
gttgttgttgcaaaggtggattcgttaatgtgacatcgattgttgttgtggcgaaggtggttgttgttgtttcaatc |
33757951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 20)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 16 - 438
Target Start/End: Complemental strand, 12888559 - 12888139
Alignment:
| Q |
16 |
ttggtgttgagttgggaggcgaaatgttcactgtctctttcttgtgtggtggtgagttcaggggtgtggc---gatgatgatgatgaggagcttgtgggt |
112 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12888559 |
ttggtgttgagttgggaggcgaa--gtttactgtctctttcttgtgt-gtggtgagttca--agtgtggcgatgatgatgatgatgaggagcttgtgggt |
12888465 |
T |
|
| Q |
113 |
tgtgttgtgttttggtggttttgtgatcttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggtt |
212 |
Q |
| |
|
||||||||| || || | ||||| ||| ||||||||||||| || |||||||||||||||||| |||||||| ||| ||| |||||| |||| ||||||| |
|
|
| T |
12888464 |
tgtgttgtg-ttgggggtttttgcgattttcttccttgcgggtgctgagtttgcggctgttagtaaaacacaggttgtctggtgtttttgtgcggtggtt |
12888366 |
T |
|
| Q |
213 |
gtttccttccgatccatatctatgtggaggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtct |
312 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||| | ||||||||||||| ||| |||||||||||||||| |||||||||| |
|
|
| T |
12888365 |
gtttccttctgatccagatctatgtggaggaggtgatggtggtgtgatgtggtgatgtaggtcac-atttttggtggtgtgaggaggtgtcggtgggtct |
12888267 |
T |
|
| Q |
313 |
tcaacggttgggttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtg |
412 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| |||||||||||| |||||| ||||||||||||||||||| |||| |||||||| |||||||||| |
|
|
| T |
12888266 |
tcaacggttgggttcgatcagatccttctcatccgattcgactactctgttatctggtggtttgtcgatgtggatcgatggtgttgctgttgtgaaggtg |
12888167 |
T |
|
| Q |
413 |
ga--ttgttgttgagttggttgttgttg |
438 |
Q |
| |
|
| ||||||||| | |||||||||||| |
|
|
| T |
12888166 |
aattttgttgttgcgctggttgttgttg |
12888139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 141 - 535
Target Start/End: Complemental strand, 14792428 - 14792030
Alignment:
| Q |
141 |
ttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgtttccttccgatccatatctatgtgga |
240 |
Q |
| |
|
||||||||||||| || |||||||||| |||||||||||||||| ||| || ||| | |||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
14792428 |
ttcttccttgcgggtgctgagtttgcgactgttagaaaaacacaggttgcctggtgaattcgtgtggtggttgtttccttctgatccagatctatgtgga |
14792329 |
T |
|
| Q |
241 |
ggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttt |
340 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||| | |
|
|
| T |
14792328 |
ggaggtgatggtggtgtgaggtggtgatgtaggccacgtttttg-gtggtgtgaggcggtgtcggtgggtcttcaacggttgggttcgatcataactatc |
14792230 |
T |
|
| Q |
341 |
tcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtgga--ttgttgttg----agttggttgtt |
434 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| |||||||||||||| |||| ||||||||||||||||||| | ||||||||| |||| |||||| |
|
|
| T |
14792229 |
tcatccggttcgactactctgttatctggtgggttgtcgatgtggatcgatggtgttgctgctgtgaaggtgaattttgttgttgcgctagtt-gttgtt |
14792131 |
T |
|
| Q |
435 |
gttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatcgttatacttaccggttgtttttcaaaggt |
534 |
Q |
| |
|
|||| ||| |||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||| ||||| |
|
|
| T |
14792130 |
gttgcaaaagtggattcgttaaggtgacatcgattgttgttgtggcgaaggtggttgttgttgtttcaatcgttatagttatcggttatttttccaaggt |
14792031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 124 - 508
Target Start/End: Original strand, 18431504 - 18431892
Alignment:
| Q |
124 |
ttggtggttttgtgatcttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgtttccttccg |
223 |
Q |
| |
|
|||| ||||||||||| ||||| |||| | || ||||||||| |||||||| |||| ||| ||| ||| |||||| |||||| ||||| |||||||||| |
|
|
| T |
18431504 |
ttgggggttttgtgattttctttgttgcaggtgctgagtttgcagctgttaggaaaatacaggttgtctggtgtttttgtgtgatggtt-tttccttccg |
18431602 |
T |
|
| Q |
224 |
atccatatctatgtggaggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttcaacggttgg |
323 |
Q |
| |
|
||||| ||||||| ||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18431603 |
atccaaatctatgcggaggagatgatggtggtgtgaggtggtgatgtaggccac-atttttggtggtgtgaggaggtgacggtgggtcttcaacggttgg |
18431701 |
T |
|
| Q |
324 |
gttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtgga--ttgttgt |
421 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||| |||| ||||| ||||||||||||||| |||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
18431702 |
gttcgatcagaatcttctcatccggttcgactactctgttatatagtgttttgtcgatgtggatcgatgatgtggctgccgtgaaggtggattttgttgt |
18431801 |
T |
|
| Q |
422 |
tgagttggttg----ttgttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatcgtt |
508 |
Q |
| |
|
|| | |||||| |||||| |||||||||||||||||| ||||||| |||||| ||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
18431802 |
tgggctggttgttgtttgttgcaaaggtggattcgttaaggtgacatcaattgttgttgcggcgaaggtggttgttgttgtttcaatcgtt |
18431892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 158 - 508
Target Start/End: Complemental strand, 18357269 - 18356915
Alignment:
| Q |
158 |
tgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgtttccttccgatccatatctatgtggaggaggtgatggtggtgt |
257 |
Q |
| |
|
||||||||| |||||||| |||| ||| ||| ||| |||||| |||||| ||||| ||||||||||||||| ||||||| ||||||| |||||||||||| |
|
|
| T |
18357269 |
tgagtttgcagctgttaggaaaatacaggttgtctggtgtttttgtgtgatggtt-tttccttccgatccaaatctatgcggaggagatgatggtggtgt |
18357171 |
T |
|
| Q |
258 |
aaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttttcatccggttcgactac |
357 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
18357170 |
gaggtggtgatgtaggccac-atttttggtggtgtgaggaggtgacggtgggtcttcaacggttgggttcgatcagaatcttctcatccggttcgactac |
18357072 |
T |
|
| Q |
358 |
tctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtgga--ttgttgttgagttggttg----ttgttggaaaggtggattc |
451 |
Q |
| |
|
||| |||| ||||| ||||||||||||||| |||||||| ||||| ||||||||||| ||||||||| | |||||| |||||| |||||||||||| |
|
|
| T |
18357071 |
tctgttatatagtgttttgtcgatgtggatcgatgatgtggctgccgtgaaggtggattttgttgttgggctggttgttgtttgttgcaaaggtggattc |
18356972 |
T |
|
| Q |
452 |
gttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatcgtt |
508 |
Q |
| |
|
|||||| ||||||| |||||| ||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
18356971 |
gttaaggtgacatcaattgttgttgcggcgaaggtggttgttgttgtttcaatcgtt |
18356915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 141 - 541
Target Start/End: Complemental strand, 50589774 - 50589365
Alignment:
| Q |
141 |
ttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgtttccttccgatccatatctatgtgga |
240 |
Q |
| |
|
||||||| ||| | || |||||||||| |||||||||| ||||| ||| | | ||||||||||||||||||||||||||| |||||| || |||||| | |
|
|
| T |
50589774 |
ttcttccatgcaggtgctgagtttgcgactgttagaaatacacatgttgtttggtgtttatgtgtggtggttgtttccttttgatccagatatatgtgaa |
50589675 |
T |
|
| Q |
241 |
ggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttt |
340 |
Q |
| |
|
|||||||||||| |||| |||||||||| |||| || | ||||||||||||||||| | ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
50589674 |
ggaggtgatggttgtgtgaggtggtgatataggtcatgttttttggtggtgtgaggaggtgctgatgggtcttcgatggttgggttcgatcaaaaccttc |
50589575 |
T |
|
| Q |
341 |
tcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctg-ctgtgaaggtggattgt--tgttgagttggttgttg-- |
435 |
Q |
| |
|
|| ||||||||||| |||| |||||| || ||||||||||||||||||||| ||||| || |||||||||||||| | ||||| | ||||||||| |
|
|
| T |
50589574 |
ccacccggttcgactgctctgttatctggtagtttgtcgatgtggattgatggtgttgttgtttgtgaaggtggattttagtgttgcgctggttgttgtt |
50589475 |
T |
|
| Q |
436 |
-------ttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatcgttatacttaccggttgtttttc |
528 |
Q |
| |
|
||| |||||||||||||||||| ||||||| |||||| |||||| |||||||||| ||||||||||||||||| | |||||||||||||| |
|
|
| T |
50589474 |
gttgttattgcaaaggtggattcgttaaggtgacatcaattgttgttgtggtgaaggtggtt---gttgtttcaatcgttattgtcaccggttgtttttc |
50589378 |
T |
|
| Q |
529 |
aaaggttattggt |
541 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
50589377 |
aaaggttgttggt |
50589365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 141 - 416
Target Start/End: Original strand, 51407196 - 51407468
Alignment:
| Q |
141 |
ttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgtttccttccgatccatatctatgtgga |
240 |
Q |
| |
|
||||| |||| || || ||||||||||| ||||||||||||||| ||| ||| |||||| ||||||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
51407196 |
ttctttcttgtgggtgctgagtttgcggttgttagaaaaacacaggttgtctggtgttttagtgtggtggatgtttccttccgatccaaatctttgtgga |
51407295 |
T |
|
| Q |
241 |
ggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttt |
340 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
51407296 |
tgaggtgatggtggtgtgaagtggtgatgtaggccac-atttttggtggtgtgaggaggtgccagtgggtcttcaacggttgggttcgatcagaaccttc |
51407394 |
T |
|
| Q |
341 |
tcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtggatt |
416 |
Q |
| |
|
|||||| ||| ||||| || |||||| ||||||||||| |||||| |||| |||||||| |||||| ||||||| |
|
|
| T |
51407395 |
tcatccagttggacta--ctgttatctgatggtttgtcgaagtggatcgatggtgttgctgttgtgaaagtggatt |
51407468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 245 - 541
Target Start/End: Complemental strand, 23533445 - 23533142
Alignment:
| Q |
245 |
gtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttttcat |
344 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||| |||| ||||||| || || |||||| |||||||| |||||| ||| |
|
|
| T |
23533445 |
gtgatggtggtgtgaggtggtgatgtaggccac-atttttggtggtgtgagtgggtgttggtgggtttttaatggttggattcgatcataaccttctcac |
23533347 |
T |
|
| Q |
345 |
ccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggt--ggattgttgttgagttggttg------ttgt |
436 |
Q |
| |
|
||||||| | |||||| |||||| |||||||||||||||||||||||| |||||||| ||||||||| | ||||||||| | | |||| |||| |
|
|
| T |
23533346 |
ccggttcaagtactctgttatctggtggtttgtcgatgtggattgatggtgttgctgttgtgaaggtaggtcttgttgttgcgcttgttgttgttattgt |
23533247 |
T |
|
| Q |
437 |
tggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatcgttatacttaccggttgtttttcaaaggtta |
536 |
Q |
| |
|
|| ||| ||||||||||||| |||||| ||||||| |||||| |||||||||||| ||||||||||||| ||| |||||||||||||| |||| ||| |
|
|
| T |
23533246 |
tgaaaacgtggattcgttaaagtgacattgattgttgttgtggtgaaggtggttgttgttgtttcaatcgctattgttaccggttgttttacaaaagttg |
23533147 |
T |
|
| Q |
537 |
ttggt |
541 |
Q |
| |
|
||||| |
|
|
| T |
23533146 |
ttggt |
23533142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 286 - 541
Target Start/End: Complemental strand, 3915365 - 3915106
Alignment:
| Q |
286 |
gtggtgtgaggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgtgg |
385 |
Q |
| |
|
|||||||||||||||| | || | || ||| |||||||||||||| |||||||| ||||| |||||||||| ||| |||||| ||||||| |||| |||| |
|
|
| T |
3915365 |
gtggtgtgaggaggtgtcagttgatcctcagcggttgggttcgattagaaccttctcatctggttcgactattctgttatctggtggtttatcgacgtgg |
3915266 |
T |
|
| Q |
386 |
attgatgatgttgctgctgtgaaggtgga--ttgttgttg---agttggttgttgttggaaaggtggattcgttaagatgacatcgattgtttttgtggc |
480 |
Q |
| |
|
|| |||| |||||||||| |||||||||| ||||||||| | | |||||||||| |||||||||||||||||| | ||||||||||| | ||||| |
|
|
| T |
3915265 |
atcgatggtgttgctgctatgaaggtggattttgttgttgcactggttgttgttgttgcaaaggtggattcgttaaggttgcatcgattgttatggtggc |
3915166 |
T |
|
| Q |
481 |
gaaggtggttgtcgttgtttcaatcgttatacttaccggttgtttttcaaaggttattggt |
541 |
Q |
| |
|
|||||||||| ||||||| ||| | ||| |||||||||||||||||||| || ||||| |
|
|
| T |
3915165 |
aaaggtggttgatgttgttt-aattatcatagttaccggttgtttttcaaagattgttggt |
3915106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 194 - 375
Target Start/End: Complemental strand, 3926441 - 3926263
Alignment:
| Q |
194 |
gtgtttatgtgtggtggttgtttccttccgatccatatctatgtggaggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtg |
293 |
Q |
| |
|
|||||| |||||||||||| |||| ||||| |||| ||||||||||| |||||| ||||||||| ||||||| |||||| |||| | |||||| |
|
|
| T |
3926441 |
gtgtttttgtgtggtggttatttc-ttccgctccagatctatgtggatgaggtgttggtggtgtgaggtggt-atgtagaccac-atttttggcggtgtg |
3926345 |
T |
|
| Q |
294 |
aggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttttcatccggttcgactactctattatctagtggttt |
375 |
Q |
| |
|
|||||||| |||||| || |||| |||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||| |
|
|
| T |
3926344 |
aggaggtggcggtggatcctcaatggttgggttcgatcagaaccttctcatccggttcgactactctgttatctggtggttt |
3926263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 429 - 541
Target Start/End: Complemental strand, 3926247 - 3926135
Alignment:
| Q |
429 |
gttgttgttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatcgttatacttaccggttgtttttc |
528 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||| | || |||||||||||||| ||||||| ||| ||||| ||||||||||||||| |
|
|
| T |
3926247 |
gttgttgttgcaaaggtggattcgttaagattgcatcgattgttatggtagcgaaggtggttgttgttgttttaattattatagttaccggttgttttta |
3926148 |
T |
|
| Q |
529 |
aaaggttattggt |
541 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
3926147 |
aaaggttgttggt |
3926135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 429 - 505
Target Start/End: Complemental strand, 8817489 - 8817413
Alignment:
| Q |
429 |
gttgttgttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatc |
505 |
Q |
| |
|
|||||||||| |||||||||||| |||| ||||||||||| || ||||||||||||||||||| |||||||||||| |
|
|
| T |
8817489 |
gttgttgttgcaaaggtggattcattaatgtgacatcgatttttgttgtggcgaaggtggttgttgttgtttcaatc |
8817413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 432 - 505
Target Start/End: Original strand, 51407525 - 51407598
Alignment:
| Q |
432 |
gttgttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatc |
505 |
Q |
| |
|
||||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
51407525 |
gttgttgcaaaactggattcgttaatgtgacatcgattgttgttgtggcgaaggtggttgttgttgtttcaatc |
51407598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 438
Target Start/End: Original strand, 2180872 - 2180943
Alignment:
| Q |
369 |
gtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtgga--ttgttgttgagttggttgttgttg |
438 |
Q |
| |
|
|||||||||||| |||||| |||| || |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2180872 |
gtggtttgtcgacgtggatcgatggtggtgctgctgtgaaggtggattttgttgttgagttggttgttgttg |
2180943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 8817605 - 8817551
Alignment:
| Q |
362 |
ttatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtggatt |
416 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||| |||||||||||||| |
|
|
| T |
8817605 |
ttatctagtggtttgtcgatgtggatcgatggtgttgctgttgtgaaggtggatt |
8817551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 429 - 541
Target Start/End: Original strand, 28149467 - 28149576
Alignment:
| Q |
429 |
gttgttgttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatcgttatacttaccggttgtttttc |
528 |
Q |
| |
|
|||||||||| ||| ||||||| ||||| |||||| ||||||| |||||||||| |||||||| ||||||||| ||||| ||| |||| ||||||| |
|
|
| T |
28149467 |
gttgttgttgcaaatatggattctttaaggtgacattgattgttgttgtggcgaaagtggttgt---tgtttcaattgttattgttatcggtggtttttc |
28149563 |
T |
|
| Q |
529 |
aaaggttattggt |
541 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
28149564 |
aaaggttgttggt |
28149576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 531
Target Start/End: Original strand, 2180965 - 2181012
Alignment:
| Q |
484 |
ggtggttgtcgttgtttcaatcgttatacttaccggttgtttttcaaa |
531 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
2180965 |
ggtggttgttgttgtttcaatcgttatagttaccagttgtttttcaaa |
2181012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 484 - 525
Target Start/End: Complemental strand, 12888120 - 12888079
Alignment:
| Q |
484 |
ggtggttgtcgttgtttcaatcgttatacttaccggttgttt |
525 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
12888120 |
ggtggttgttgttgtttcaatcgttatagttaccggttgttt |
12888079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 3915421 - 3915350
Alignment:
| Q |
194 |
gtgtttatgtgtggtggttgtttccttccgatccatatctatgtggaggaggtgatggtggtgtaaggtggtg |
266 |
Q |
| |
|
|||||| |||||||||||| |||| ||||| |||| ||||||||||| |||||| ||||||||| ||| |||| |
|
|
| T |
3915421 |
gtgtttttgtgtggtggttatttc-ttccgctccagatctatgtggatgaggtgttggtggtgtgaggaggtg |
3915350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 46879568 - 46879652
Alignment:
| Q |
51 |
tctttcttgtgtggtggtgagttc-aggggtgtggcgatgatgatgatgaggagcttgtgggttgtgttgtgttttggtggttttgtg |
137 |
Q |
| |
|
||||||||| |||||| |||||| ||||||| |||||||||||| | |||||||||||| |||||||| ||| || ||||||||| |
|
|
| T |
46879568 |
tctttcttgagtggtgttgagttttaggggtgaggcgatgatgataa---ggagcttgtggggtgtgttgtttttggggggttttgtg |
46879652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 477
Target Start/End: Complemental strand, 54200827 - 54200799
Alignment:
| Q |
449 |
ttcgttaagatgacatcgattgtttttgt |
477 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
54200827 |
ttcgttaagatgacatcgattgtttttgt |
54200799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 535
Target Start/End: Complemental strand, 36934557 - 36934034
Alignment:
| Q |
14 |
gtttggtgttgagttgggaggcgaaatgttcactgtctctttcttgtgtggtggtgagttcaggggtgtggcgatgatgatgatgaggagcttgtgggtt |
113 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36934557 |
gtttggtgttgagttgggaggcgaaatattcactgtctctt-cttgtg--gtggtgagttcggaggtgtggcgatgatgataatgaggagcttgtgggtt |
36934461 |
T |
|
| Q |
114 |
gtgttgtgttttggtggt---------tttgtgatcttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtg |
204 |
Q |
| |
|
|||||| ||| || || |||||||| ||| |||| |||| || ||||||||||||||||||||||||||| || ||| |||||| |||| |
|
|
| T |
36934460 |
gtgttgcgttgggggggggggggggtgtttgtgattttcgtcctagcgggtgctgagtttgcggctgttagaaaaacacagtttgtctggtgtttttgtg |
36934361 |
T |
|
| Q |
205 |
tggtggttgtttccttccgatccatatctatgtggaggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccg |
304 |
Q |
| |
|
|||||| |||||||||||||| | ||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| || |
|
|
| T |
36934360 |
tggtggatgtttccttccgattaagatctatgtggaggaggtga-----------ggtggtgatgtaggtcac-atttttggtggtgtgaggaggtgtcg |
36934273 |
T |
|
| Q |
305 |
gtgggtcttcaacggttgggttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctg |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| |
|
|
| T |
36934272 |
gtgggtcttcaacggttgggttcgatcagaaccttctcatctggttcgactactctattatctggtggtttgccagtgtggattgatgatgttgctgctg |
36934173 |
T |
|
| Q |
405 |
tgaaggtgga--ttgttgttgagttg------gttgttgttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgtt |
496 |
Q |
| |
|
||| |||||| ||||||||| |||| |||||||||| || ||||||||| ||||| || |||||| |||| ||||||||||||||||||| ||| |
|
|
| T |
36934172 |
tgatggtggattttgttgttgcgttggttgttgttgttgttgcaacggtggattcattaaggtgtcatcgactgttgttgtggcgaaggtggttgttgtt |
36934073 |
T |
|
| Q |
497 |
gtttcaatcgttatacttaccggttgtttttcaaaggtt |
535 |
Q |
| |
|
||||||||||||| | | | ||||||||||||||||||| |
|
|
| T |
36934072 |
gtttcaatcgttaaagtaatcggttgtttttcaaaggtt |
36934034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 101 - 541
Target Start/End: Original strand, 5892775 - 5893215
Alignment:
| Q |
101 |
gagcttgtgggttgtgttgtgttttggtggttttgtgatcttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgttta |
200 |
Q |
| |
|
||||||||||||| ||||||||| || ||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||| ||| ||| |||||| |
|
|
| T |
5892775 |
gagcttgtgggttatgttgtgtt--gggggttttgtgattttcttccttgcggatgctgagtttgcggctattagaaaaacacaggttgtctggtgtttt |
5892872 |
T |
|
| Q |
201 |
tgtgtggtggttgtttccttccgatccatatctatgtggaggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggt |
300 |
Q |
| |
|
||||||||||| |||||||||||| || |||||||||||||||||||||||||||| ||| |||||||| ||||||| |||||||||||| || |
|
|
| T |
5892873 |
tgtgtggtggt--tttccttccgattcagatctatgtggaggaggtgatggtggtgtgaggcggtgatgtcggccacg-ttttttgtggtgtgaggaagt |
5892969 |
T |
|
| Q |
301 |
gccggtgggtcttcaacggttgggttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgct |
400 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| |||||| |||||||||||||||||||||||| ||||| | |
|
|
| T |
5892970 |
gtcggtgggtcttcaacggttgggttcaatcagaaccttctcatccggttcgattactctgttatctggtggtttgtcgatgtggattgatggtgttgtt |
5893069 |
T |
|
| Q |
401 |
gctgtgaaggtggat-tgttgttgagttg------gttgttgttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtc |
493 |
Q |
| |
|
| ||||||| || | |||||||| |||| |||||||||| |||||| ||||||||||| || |||||| || | ||||||||||| ||||||| |
|
|
| T |
5893070 |
gttgtgaagttgattctgttgttgcgttggttgttgttgttgttgcaaaggtagattcgttaaggtgtcatcgaatg-tgttgtggcgaagatggttgtt |
5893168 |
T |
|
| Q |
494 |
gttgtttcaatcgttatacttaccggttgtttttcaaaggttattggt |
541 |
Q |
| |
|
|||| ||||||||| ||| ||| || |||||||||||||||| ||||| |
|
|
| T |
5893169 |
gttgcttcaatcgtcatagtta-cgattgtttttcaaaggttgttggt |
5893215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 141 - 502
Target Start/End: Original strand, 15121371 - 15121734
Alignment:
| Q |
141 |
ttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgtttccttccgatccatatctatgtgga |
240 |
Q |
| |
|
||||||||||||| || ||||||||||||| ||||||||||| | ||| ||| ||| || |||||||||| ||||||||||||||||| |||||| |||| |
|
|
| T |
15121371 |
ttcttccttgcgggtgctgagtttgcggctcttagaaaaacataggttgtctggtgcttttgtgtggtggatgtttccttccgatccagatctatatgga |
15121470 |
T |
|
| Q |
241 |
ggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttt |
340 |
Q |
| |
|
|||| |||||| ||||| ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15121471 |
ggagttgatgggggtgtgaggtggtgatgtaggccac-atttttggtggtgtgaggaggtgtcagtgggtcttcaacggtt-ggttcgatcagaaccttc |
15121568 |
T |
|
| Q |
341 |
tcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtgg--attgttgttgagttggttgt---tg |
435 |
Q |
| |
|
||||| |||||||||||||| |||| | |||| |||| ||||| | |||| |||||||||||||||||||| |||||||| | ||||||| || |
|
|
| T |
15121569 |
tcatctggttcgactactctgttatttgttggtatgtcagtgtgg-tcgatggtgttgctgctgtgaaggtgggttttgttgttccgctggttgtttctg |
15121667 |
T |
|
| Q |
436 |
ttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttca |
502 |
Q |
| |
|
|| |||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
15121668 |
ctgcaaaggtagattcattaaggtgacatcgattgttgttgtggcgaaggtggttgttgttgtttca |
15121734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 86 - 416
Target Start/End: Complemental strand, 26200032 - 26199702
Alignment:
| Q |
86 |
gatgatgatgatgaggagcttgtgggttgtgttgtgttttggtggttttgtgatcttcttccttgcggatgttgagtttgcggctgttagaaaaacacaa |
185 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| || | || ||| |||||| ||||||||| | | || ||||||||||||||||||||||||||| |
|
|
| T |
26200032 |
gatgatgatgatgaggagcttgtgggttgagttatgat--gggggtaatgtgattttcttccttcctggtgctgagtttgcggctgttagaaaaacacag |
26199935 |
T |
|
| Q |
186 |
---gttatctagtgtttatgtgtggtggttgtttccttccgatccatatctatgtggaggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnn |
282 |
Q |
| |
|
||| ||| |||||| |||||||||||||||||||||||||||| |||||||| ||| |||||||||| |||| |||||||||| || || ||| |
|
|
| T |
26199934 |
ttggttgtctggtgtttttgtgtggtggttgtttccttccgatccagatctatgtagagaaggtgatggttgtgtgaggtggtgatctatgctacgtttt |
26199835 |
T |
|
| Q |
283 |
nnngtggtgtgaggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatg |
382 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||||| | |||||||||||||| |
|
|
| T |
26199834 |
tg-gtggtgtgaggatgtgacggtgggtcttcaatggttgggttcgatcagtaccttctcatcaggttcgactactctattatttggtggtttgtcgatg |
26199736 |
T |
|
| Q |
383 |
tggattgatgatgttgctgctgtgaaggtggatt |
416 |
Q |
| |
|
|| || |||| ||||| || |||||||||||||| |
|
|
| T |
26199735 |
tgtatcgatggtgttgttgttgtgaaggtggatt |
26199702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 157 - 530
Target Start/End: Complemental strand, 47589210 - 47588830
Alignment:
| Q |
157 |
ttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgtttccttccgatccatatctatgtggaggaggtgatggtggtg |
256 |
Q |
| |
|
||||||||||| || ||||||||||||| ||| | | |||||| |||||||||| ||||||||| |||||| |||||||||| ||| |||| |||||| |
|
|
| T |
47589210 |
ttgagtttgcgacttttagaaaaacacaggttgtttggtgtttttgtgtggtggacgtttccttctgatccaggtctatgtggatgagatgatagtggtg |
47589111 |
T |
|
| Q |
257 |
taaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttttcatccggttcgacta |
356 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| |||||||||||| ||| |||||||||| ||||| |
|
|
| T |
47589110 |
tgaggtggtgatgtaggccacatttttta-tggtgtgaggaggtgtcggtgggtctttaacggttgagttcgatcagaatcttctcatccggtttgacta |
47589012 |
T |
|
| Q |
357 |
ctctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtgga--ttgttgttgagttg------gttgttgttggaaaggtgga |
448 |
Q |
| |
|
|| | |||||| || |||||||||||| | | || ||||||||||||||||||||| ||||||||| | || |||||||||| ||||||||| |
|
|
| T |
47589011 |
ctgtgttatctgatgatttgtcgatgtgaaacgttggtgttgctgctgtgaaggtggattttgttgttgcgctggttgttgttgttgttgcaaaggtgga |
47588912 |
T |
|
| Q |
449 |
ttcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatcgttatacttaccggttgtttttcaa |
530 |
Q |
| |
|
||||||||| |||||| ||||||| ||||||||| |||||| || |||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
47588911 |
ttcgttaaggtgacatagattgttgttgtggcgatggtggtggttgttgtttcaatcattatagttataagttgtttttcaa |
47588830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 289 - 541
Target Start/End: Original strand, 40074310 - 40074570
Alignment:
| Q |
289 |
gtgtgaggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgtggatt |
388 |
Q |
| |
|
||||||||||||| |||||||||| ||| | ||||||||||||||||||| |||||||||||||||||| | |||||| |||||||||||| |||||| |
|
|
| T |
40074310 |
gtgtgaggaggtgtcggtgggtctccaatgactgggttcgatcagaaccttctcatccggttcgactactatgttatctggtggtttgtcgaggtggatc |
40074409 |
T |
|
| Q |
389 |
gatgatgttgctgctgtgaaggtgga--ttgttgttgagttggttg------ttgttggaaaggtggattcgttaagatgacatcgattgtttttgtggc |
480 |
Q |
| |
|
|||| |||||||||| |||||||||| ||||||||| | |||||| |||||| ||||||||||||||| || |||||||||||||| ||||| | |
|
|
| T |
40074410 |
gatggtgttgctgctctgaaggtggattttgttgttgcgatggttgttgttattgttgcaaaggtggattcgttgaggtgacatcgattgttgttgtgac |
40074509 |
T |
|
| Q |
481 |
gaaggtggttgtcgttgtttcaatcgttatacttaccggttgtttttcaaaggttattggt |
541 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
40074510 |
gaaggtggttgttgttttttcaatcgttattgttaccggtggtttttcaaaggttgttggt |
40074570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 5892712 - 5892772
Alignment:
| Q |
14 |
gtttggtgttgagttgggaggcgaaatgttcactgtctctttcttgtgtggtggtgagttc |
74 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5892712 |
gtttggtgttaagttgggaggcgaaatgttcactgtctctttcttgtgtggttgtgagttc |
5892772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 459 - 541
Target Start/End: Complemental strand, 26199506 - 26199424
Alignment:
| Q |
459 |
tgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatcgttatacttaccggttgtttttcaaaggttattggt |
541 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||| |||||||||||| ||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
26199506 |
tgacatcgattgttgctgcggcgaagctggttgttgttgtttcaatcattatagttaccagttgtttttcaaaggttgttggt |
26199424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 416
Target Start/End: Complemental strand, 36593216 - 36592822
Alignment:
| Q |
16 |
ttggtgttgagttgggaggcgaaatgttcactgtctctttcttgtgtggtggtgagttcaggggtgtggcgatgatgatgatgaggagcttgtgggttgt |
115 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36593216 |
ttggtgttgagttgggaggcgaa--gtttactgtctctttcttgtg-ggtggggagttcgggggtggggcgatgatgatgatgaggagcttgtgggttgt |
36593120 |
T |
|
| Q |
116 |
gttgtgttttggtggttttgtgatcttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgtt |
215 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||| || |||||||||||||| |||| |||||||||| | | ||| |||||| ||||||||| ||||| |
|
|
| T |
36593119 |
gttgtgtt--gggggttttgtgattgtcttccttgtgggtgttgagtttgcggttgttggaaaaacacatgctgtctggtgtttttgtgtggtgattgtt |
36593022 |
T |
|
| Q |
216 |
tccttccgatccatatctatgtggaggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttca |
315 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||| |
|
|
| T |
36593021 |
tccttctgatccagatctatgtggaggaggtgatggtggtgtgaggtggtgatgtaggccac-atttttggtggtgtgaggaagggccggtgggtcttca |
36592923 |
T |
|
| Q |
316 |
acggttgggttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtggat |
415 |
Q |
| |
|
|| |||||||||||||| |||||| ||| |||||| | ||||||| |||||| |||||||||||| |||||| |||| || ||||| ||||||||||||| |
|
|
| T |
36592922 |
actgttgggttcgatcataaccttctcacccggtttggctactctgttatctggtggtttgtcgacgtggatcgatggtggtgctgttgtgaaggtggat |
36592823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 141 - 524
Target Start/End: Complemental strand, 5051580 - 5051192
Alignment:
| Q |
141 |
ttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgtttccttccgatccatatctatgtgga |
240 |
Q |
| |
|
|||||||||||| || ||||||||||||| ||||||||| |||| || ||| |||||| |||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
5051580 |
ttcttccttgcgtgtgctgagtttgcggctcttagaaaaatacaaattgtctggtgtttttgtgtggtggttgtttccttccaatccagatctatgtgga |
5051481 |
T |
|
| Q |
241 |
ggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttt |
340 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5051480 |
ggaggtgatgggtgtgtgaggtggtgatgtaggccac-atttttggtggtgtgaggaggtgtcggtgggtcttcaacggttgggttcgatcataaccttc |
5051382 |
T |
|
| Q |
341 |
tcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtgga--ttgttgttgagttgg----ttgtt |
434 |
Q |
| |
|
|||||||||| ||||||||| |||| | ||||||||| ||||||||| | || | ||||||||| |||||||| |||||||| ||||| ||||| |
|
|
| T |
5051381 |
tcatccggtttgactactctgttatatggtggtttgttgatgtggatcgttggttttgctgctgcaaaggtggattttgttgtttcgttggttgtttgtt |
5051282 |
T |
|
| Q |
435 |
gttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatcgttatacttaccggttgtt |
524 |
Q |
| |
|
|||| |||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |||||||||| |||||| |||| ||||||| |
|
|
| T |
5051281 |
gttgcaaaggtggattcgttaaggagacattgattgttgttgtggcgaaggtggttgttgttgtttcaaacgttattgttactggttgtt |
5051192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 286 - 541
Target Start/End: Complemental strand, 1242786 - 1242521
Alignment:
| Q |
286 |
gtggtgtgaggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgtgg |
385 |
Q |
| |
|
|||| ||||||||||| ||||| | |||||| |||||||||||| ||| ||||||||||||||||||||| ||||||| |||||||||||| ||| |
|
|
| T |
1242786 |
gtggcgtgaggaggtgttggtggatgttcaacaactgggttcgatcataacattttcatccggttcgactactacattatctggtggtttgtcgagatgg |
1242687 |
T |
|
| Q |
386 |
attgatgatgttgctgctgtgaaggtgga--ttgttgttgagttg------gttgttgttggaaaggtggattcgttaagatgacatcgattgtttttgt |
477 |
Q |
| |
|
|| |||||||||||||||||||||||||| || |||||| | || |||||||||| | |||||||||||||||| |||||||||||||| |||| |
|
|
| T |
1242686 |
atcgatgatgttgctgctgtgaaggtggattttattgttgcgatggttgttgttgttgttgcagaggtggattcgttaaggtgacatcgattgttgttgt |
1242587 |
T |
|
| Q |
478 |
g--gcgaaggtggttgtcgttgtttcaatcgttatacttaccggttgtttttcaaaggttattggt |
541 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||| |||| || |||||||||||||| ||||| |
|
|
| T |
1242586 |
ggcgcgaaggtggttgttgttgtttcaatcgttattgctaccagtggtttttcaaaggttgttggt |
1242521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 484 - 535
Target Start/End: Complemental strand, 36592770 - 36592719
Alignment:
| Q |
484 |
ggtggttgtcgttgtttcaatcgttatacttaccggttgtttttcaaaggtt |
535 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36592770 |
ggtggttgttgttgtttcaatcgttatagttaccggttgtttttcaaaggtt |
36592719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 141 - 535
Target Start/End: Original strand, 47303 - 47701
Alignment:
| Q |
141 |
ttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgtttccttccgatccatatctatgtgga |
240 |
Q |
| |
|
||||||||||||| || |||||||||| |||||||||||||||| ||| || ||| | |||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
47303 |
ttcttccttgcgggtgctgagtttgcgactgttagaaaaacacaggttgcctggtgaattcgtgtggtggttgtttccttctgatccagatctatgtgga |
47402 |
T |
|
| Q |
241 |
ggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttt |
340 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||| | |
|
|
| T |
47403 |
ggaggtgatggtggtgtgaggtggtgatgtaggccacgtttttg-gtggtgtgaggcggtgtcggtgggtcttcaacggttgggttcgatcataactatc |
47501 |
T |
|
| Q |
341 |
tcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtgga--ttgttgttg----agttggttgtt |
434 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| |||||||||||||| |||| ||||||||||||||||||| | ||||||||| |||| |||||| |
|
|
| T |
47502 |
tcatccggttcgactactctgttatctggtgggttgtcgatgtggatcgatggtgttgctgctgtgaaggtgaattttgttgttgcgctagtt-gttgtt |
47600 |
T |
|
| Q |
435 |
gttggaaaggtggattcgttaagatgacatcgattgtttttgtggcgaaggtggttgtcgttgtttcaatcgttatacttaccggttgtttttcaaaggt |
534 |
Q |
| |
|
|||| ||| |||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||| ||||| |
|
|
| T |
47601 |
gttgcaaaagtggattcgttaaggtgacatcgattgttgttgtggcgaaggtggttgttgttgtttcaatcgttatagttatcggttatttttccaaggt |
47700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 16 - 438
Target Start/End: Original strand, 38149270 - 38149684
Alignment:
| Q |
16 |
ttggtgttgagttgggaggcgaaatgttcactgtctctttcttgtgtggtggtgagttcagggg-tgtggcgatgatgatgatgaggagcttgtgggttg |
114 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
38149270 |
ttggtgttgagttgggaggcgaa--gtttattgtctctttcttgtgtggtggtgagttcggggggtgtggcgatgatgatgatgaggagcttgtacgttt |
38149367 |
T |
|
| Q |
115 |
tgttgtgttttggtggttttgtgatcttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgt |
214 |
Q |
| |
|
||||| | |||||||||| ||||||||| || || ||||||||||| |||| |||||||||| ||| ||| |||||| |||||||||||||| |
|
|
| T |
38149368 |
tgttggg--------gttttgtgattgtcttccttgtgggtgctgagtttgcggttgttggaaaaacacatgttgtctggtgtttttgtgtggtggttgt |
38149459 |
T |
|
| Q |
215 |
ttccttccgatccatatctatgtggaggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttc |
314 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||| | ||||||||||| ||||| |||||||||||| | |||||| ||||||| |
|
|
| T |
38149460 |
ttccttccgatccagatctatatggaggaggtgatggtggtgtgaagtggtgatgtacgccac-atttttggtggtgtgaggaagggccggttggtcttc |
38149558 |
T |
|
| Q |
315 |
aacggttgggttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtgga |
414 |
Q |
| |
|
|| || |||||||||||||||||| ||| |||||||| |||||| |||| | |||||||||||| |||||| |||| || |||||||||||||||||| |
|
|
| T |
38149559 |
aattgtcgggttcgatcagaaccttctcacccggttcgggtactctgttatttggtggtttgtcgacgtggatcgatggtggtgctgctgtgaaggtgga |
38149658 |
T |
|
| Q |
415 |
--ttgttgttgagttggttgttgttg |
438 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
38149659 |
ttttgttgttgcgttggttgttgttg |
38149684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 16 - 437
Target Start/End: Original strand, 32919264 - 32919674
Alignment:
| Q |
16 |
ttggtgttgagttgggaggcgaaatgttcactgtctctttcttgtgtggtggtgagttcaggggtgtggcgatgatgatgatgaggagcttgtgggttgt |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32919264 |
ttggtgttgagttgggaggcgaa--gttcactatctctttcttgtgtggtggtgagttcgtgggtgtggcaatgatgatgatgaggagcttgtgggttgt |
32919361 |
T |
|
| Q |
116 |
gttgtgttttggtggttttgtgatcttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagt-tatctagtgtttatgtgtggtggttgt |
214 |
Q |
| |
|
|||||| |||| ||||||||||| ||||| ||| || || ||||||||||| |||| |||||||||| || | | | ||| || |||||||||||||| |
|
|
| T |
32919362 |
gttgtg--ttgggggttttgtgattgtcttctttgtgggtgctgagtttgcggttgttggaaaaacacatgtgtgtttggtgcttttgtgtggtggttgt |
32919459 |
T |
|
| Q |
215 |
ttccttccgatccatatctatgtggaggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttc |
314 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||| | ||||||||||||| |
|
|
| T |
32919460 |
ttccttccgatccagatctatgtggaggaggtgat----------ggtggtgatgtaggccac-agttttggtggtgtgaggaagggccggtgggtcttg |
32919548 |
T |
|
| Q |
315 |
aacggttgggttcgatcagaaccttt-tcatccggttcgactactctattatctagtggtttgtcgatgtggattgatgatgttgctgctgtgaaggtgg |
413 |
Q |
| |
|
||| ||| ||||| |||||||||||| ||| |||||||| |||||| |||||| |||||||||||| |||||| |||| || ||||||||||||||||| |
|
|
| T |
32919549 |
aactgttaggttcaatcagaacctttctcacccggttcgggtactctgttatctggtggtttgtcgacgtggatcgatggtggtgctgctgtgaaggtgg |
32919648 |
T |
|
| Q |
414 |
a--ttgttgttgagttggttgttgtt |
437 |
Q |
| |
|
| ||||||||| | ||||||||||| |
|
|
| T |
32919649 |
attttgttgttgcgctggttgttgtt |
32919674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 16 - 375
Target Start/End: Complemental strand, 20519316 - 20518976
Alignment:
| Q |
16 |
ttggtgttgagttgggaggcgaaatgttcactgtctctttcttgtgtggtggtgagttcaggggtgtggcgatgatgatgatgaggagcttgtgggttgt |
115 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| ||| ||| | |
|
|
| T |
20519316 |
ttggtgttgagttgggaggcgaa--gtttattgtctctttcttgtgtggtggtgagttcgggggtatggcgatgatgatga---ggaacttatggat--- |
20519225 |
T |
|
| Q |
116 |
gttgtgttttggtggttttgtgatcttcttccttgcggatgttgagtttgcggctgttagaaaaacacaagttatctagtgtttatgtgtggtggttgtt |
215 |
Q |
| |
|
|| ||||||||||| |||||||||| || || ||||||||||| ||||||||||||||||||| ||| | |||| ||||||||||||||| |
|
|
| T |
20519224 |
----------gggggttttgtgattttcttccttgtgggtgctgagtttgcggttgttagaaaaacacaagttgtctggagtttttgtgtggtggttgtt |
20519135 |
T |
|
| Q |
216 |
tccttccgatccatatctatgtggaggaggtgatggtggtgtaaggtggtgatgtaggccacgnnnnnnngtggtgtgaggaggtgccggtgggtcttca |
315 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| | || |||||||||||| |
|
|
| T |
20519134 |
tccttccgatccagatctatgtggaggaggtgatggtggtgtgaggtggtgatgtagaccac-atttttggtggtgtgaggaagggctggtgggtcttca |
20519036 |
T |
|
| Q |
316 |
acggttgggttcgatcagaaccttttcatccggttcgactactctattatctagtggttt |
375 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||| |||||| ||||||| |
|
|
| T |
20519035 |
acggttgggttcgatcagaacattctcatccggttcgactactcttttatctggtggttt |
20518976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 484 - 535
Target Start/End: Original strand, 38149706 - 38149757
Alignment:
| Q |
484 |
ggtggttgtcgttgtttcaatcgttatacttaccggttgtttttcaaaggtt |
535 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38149706 |
ggtggttgttgttgtttcaatcgttatagttaccggttgtttttcaaaggtt |
38149757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 488 - 535
Target Start/End: Complemental strand, 20516552 - 20516505
Alignment:
| Q |
488 |
gttgtcgttgtttcaatcgttatacttaccggttgtttttcaaaggtt |
535 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20516552 |
gttgttgttgtttcaatcgttatagttaccggttgtttttcaaaggtt |
20516505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 531
Target Start/End: Original strand, 32919697 - 32919744
Alignment:
| Q |
484 |
ggtggttgtcgttgtttcaatcgttatacttaccggttgtttttcaaa |
531 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32919697 |
ggtggttgttgttgtttcaatcgttatagttaccggttgtttttcaaa |
32919744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 20516643 - 20516575
Alignment:
| Q |
372 |
gtttgtcgatgtggattgatgatgttgctgctgtgaaggtgga--ttgttgttgagttggttgttgttg |
438 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| ||||||| | ||||||||| | |||||||||||| |
|
|
| T |
20516643 |
gtttgttgatgtggatcgatgatgttgctgctgcgaaggtgaattttgttgttgcgctggttgttgttg |
20516575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 469
Target Start/End: Complemental strand, 54944 - 54846
Alignment:
| Q |
374 |
ttgtcgatgtggattgatgatgttgctgctgtgaaggtggattgttgttgagttg---gttgttgttggaaaggtggattc-gttaagatgacatcgatt |
469 |
Q |
| |
|
|||||| ||||||| |||| |||||||| |||||||||||||| |||||| | || |||||||||| ||||||||||| |||||| ||||||||||| |
|
|
| T |
54944 |
ttgtcgttgtggatcgatggtgttgctgttgtgaaggtggatt-ttgttgtgatggttgttgttgttgcgaaggtggattctgttaaggtgacatcgatt |
54846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University