View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7116_high_6 (Length: 553)
Name: NF7116_high_6
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7116_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 6 - 531
Target Start/End: Complemental strand, 33800425 - 33799900
Alignment:
| Q |
6 |
atggtgttgctagagataattgcgggaaggaagaattatgatcctaatgagacttcggagaaattcaatttccctcgttttgcttttaagatgatggaag |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33800425 |
atggtgttgctagagataattgcgggaaggaagaattatgatcctaatgagacttcggagaaattcaatttccctcgttttgcttttaagatgatggaag |
33800326 |
T |
|
| Q |
106 |
aaggtaaaatgagagatatcattgattcagagatgaaaatagatgatgagaatgatgatagggttcattgtgctataaatgttacattgtggtgtataca |
205 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33800325 |
aaggtaaaatgagagatatcattgattcagagatgaaaatagatgatgagaatgatgatagggttcattgtgctataaatgttgcattgtggtgtataca |
33800226 |
T |
|
| Q |
206 |
ggaagacatgtctatgagaccttccatgacaaaagttgttcaaatgttagagggtctttgcactgttcctaaaccgccaaaatcctctaatgaaggaaac |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33800225 |
ggaagacatgtctatgagaccttccatgacaaaagttgttcaaatgttagagggtctttgcactgttcctaaaccaccaaaatcctctaatgaaggaaaa |
33800126 |
T |
|
| Q |
306 |
acctcctcttcttctgatgcttatctatcagcggttagtctttcaggaccaagatagcaataataactc--tgtannnnnnnnnnnnnnnnnnnacttaa |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |
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| T |
33800125 |
acctcctcttcttctgatgcttatctatcagcggttagtctttcaggaccaagatagcaataatagctctatgtattttttttctttcttttttacttaa |
33800026 |
T |
|
| Q |
404 |
atcactttcggtctctgtatttatggaatcacggttttagtcccctatttttaaatatgaaatatagtcccttagtttttaaatatcataatttttccct |
503 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33800025 |
atcactttcgg--tctgtatttatggaatcacggttttaatcccctatttttaaatatgaaatatagtcccttagtttttaaatatcataatttttccct |
33799928 |
T |
|
| Q |
504 |
accactcaatttgtaacaatatattata |
531 |
Q |
| |
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|||||||||||||||||||||||||||| |
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|
| T |
33799927 |
accactcaatttgtaacaatatattata |
33799900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 6 - 375
Target Start/End: Original strand, 33813415 - 33813784
Alignment:
| Q |
6 |
atggtgttgctagagataattgcgggaaggaagaattatgatcctaatgagacttcggagaaattcaatttccctcgttttgcttttaagatgatggaag |
105 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33813415 |
atggtgttgctagagataattgggggaaggaagaattatgatcctactgagacgtcggagaaattcaatttccctcgttttgcttttaagatgatggaag |
33813514 |
T |
|
| Q |
106 |
aaggtaaaatgagagatatcattgattcagagatgaaaatagatgatgagaatgatgatagggttcattgtgctataaatgttacattgtggtgtataca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| |
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|
| T |
33813515 |
aaggtaaaatgagagatatcattgattcagagttgaaaatagatgatgagaatgatgatagggtacattgtgctataagtgttgcattgtggtgtataca |
33813614 |
T |
|
| Q |
206 |
ggaagacatgtctatgagaccttccatgacaaaagttgttcaaatgttagagggtctttgcactgttcctaaaccgccaaaatcctctaatgaaggaaac |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33813615 |
ggaagacatgtctatgagaccttccatgacaaaagttgttcaaatgttagagggtctttgcactgttcctaaaccaccaaaatcctctaatgaaggaaac |
33813714 |
T |
|
| Q |
306 |
acctcctcttcttctgatgcttatctatcagcggttagtctttcaggaccaagatagcaataataactct |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||| || ||||||||||||||||| |||| |
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|
| T |
33813715 |
acctcctcttcttctgatgcttatctatcagcagttggtctttctggcccaagatagcaataatagctct |
33813784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 6 - 304
Target Start/End: Complemental strand, 33804889 - 33804591
Alignment:
| Q |
6 |
atggtgttgctagagataattgcgggaaggaagaattatgatcctaatgagacttcggagaaattcaatttccctcgttttgcttttaagatgatggaag |
105 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33804889 |
atggtgttgctagagataattgggggaaggaagaattatgatcctactgagacgtcggagaaattcaatttccctcgttttgcttttaagatgatggaag |
33804790 |
T |
|
| Q |
106 |
aaggtaaaatgagagatatcattgattcagagatgaaaatagatgatgagaatgatgatagggttcattgtgctataaatgttacattgtggtgtataca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| |
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|
| T |
33804789 |
aaggtaaaatgagagatatcattgattcagagttgaaaatagatgatgagaatgatgatagggtacattgtgctataagtgttgcattgtggtgtataca |
33804690 |
T |
|
| Q |
206 |
ggaagacatgtctatgagaccttccatgacaaaagttgttcaaatgttagagggtctttgcactgttcctaaaccgccaaaatcctctaatgaaggaaa |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
33804689 |
ggaagacatgtctatgagaccttccatgacaaaagttgttcaaatgttagagggtctttgcactgttcctaaaccaccaaaatcctctaatgaaggaaa |
33804591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 375
Target Start/End: Original strand, 31029087 - 31029446
Alignment:
| Q |
10 |
tgttgctagagataattgcgggaaggaagaattatgatcctaatgagacttcggagaaattcaatttccctcgttttgcttttaagatgatggaagaagg |
109 |
Q |
| |
|
||||||| |||||||| | |||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
31029087 |
tgttgcttgagataatcgggggacggaagaattatgatcctaatgagacttcagagaaatcgaatttccctcgttttgcttttaagatgatggaagaagg |
31029186 |
T |
|
| Q |
110 |
taaaatgagagatatcattgattcagagatgaaaatagatgatgagaatgatgatagggttcattgtgctataaatgttacattgtggtgtatacaggaa |
209 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| |||| |||||||||||||||||||| |
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|
| T |
31029187 |
taaagtgagagatatcattgattcggagatgaaaatagatgatgagtttgatgatagggttcactgtgctataagtgttgcattgtggtgtatacaggaa |
31029286 |
T |
|
| Q |
210 |
gacatgtctatgagaccttccatgacaaaagttgttcaaatgttagagggtctttgcactgttcctaaaccgccaaaatcctctaatgaaggaaacacct |
309 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||| | ||| |
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|
| T |
31029287 |
gacatgtctatgagaccttccatgacagaagttgttcaaatgttagagggtctttgtactgttcctaaaccaccaaagtcctccaatgaaggagatacc- |
31029385 |
T |
|
| Q |
310 |
cctcttcttctgatgcttatctatcagcggttagtctttcaggaccaagatagcaataataactct |
375 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| |
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|
| T |
31029386 |
-----tcttctgatgcttatctatcagcagttagtctttcaggtccaagatagcaataatagctct |
31029446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 215 - 346
Target Start/End: Complemental strand, 6351509 - 6351381
Alignment:
| Q |
215 |
gtctatgagaccttccatgacaaaagttgttcaaatgttagagggtctttgcactgttcctaaaccgccaaaatcctctaatgaaggaaacacctcctct |
314 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||| |||||||| || ||||||||| || ||||| |
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|
| T |
6351509 |
gtctttgagaccttccaggacaaaagttgttcaaatgttagagggtatttgcactgttccataaccaccaaaatcttccaatgaaggatacccctcc--- |
6351413 |
T |
|
| Q |
315 |
tcttctgatgcttatctatcagcggttagtct |
346 |
Q |
| |
|
|||| |||||||||||||||||| ||| |||| |
|
|
| T |
6351412 |
tcttgtgatgcttatctatcagcagtttgtct |
6351381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 516
Target Start/End: Original strand, 31029534 - 31029588
Alignment:
| Q |
463 |
aaatatagtcccttagttttt-aaatatcataatttttccctaccactcaatttg |
516 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| |||||| |||||||| |||||| |
|
|
| T |
31029534 |
aaatacagtcccttagtttttaaaatatcatactttttcactaccactaaatttg |
31029588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 6 - 285
Target Start/End: Original strand, 49464074 - 49464350
Alignment:
| Q |
6 |
atggtgttgctagagataattgcgggaaggaagaattatgatcctaatgagacttcggagaaattcaatttccctcgttttgcttttaagatgatggaag |
105 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||||| |||||| ||||||||| ||| |||||| |||||||| |||||||||||||||||||||||| |
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|
| T |
49464074 |
atggtattgctagagattattggtggaaggaagaactatgatactaatgagagttcagagaaaagttatttccctagttttgcttttaagatgatggaag |
49464173 |
T |
|
| Q |
106 |
aaggtaaaatgagagatatcattgattcagagatgaaaatagatgatgagaatgatgatagggttcattgtgctataaatgttacattgtggtgtataca |
205 |
Q |
| |
|
|||| ||| |||||||||| ||||||| ||| ||||||| ||||||| |||||||||||||||| |||||||||| ||| |||||||||||||||| |
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|
| T |
49464174 |
aagggaaagtgagagatatacttgattccgagctgaaaat---tgatgagcatgatgatagggttcaatgtgctataagggttgcattgtggtgtataca |
49464270 |
T |
|
| Q |
206 |
ggaagacatgtctatgagaccttccatgacaaaagttgttcaaatgttagagggtctttgcactgttcctaaaccgccaa |
285 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
49464271 |
agaagacatgtctatgagaccttcaatgaccaaagttgttcaaatgttggagggtctctgcactgttcctaaaccaccaa |
49464350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 262
Target Start/End: Complemental strand, 2528236 - 2527983
Alignment:
| Q |
6 |
atggtgttgctagagataattgcgggaaggaagaattatgatcctaatgagacttcggagaaattcaatttccctcgttttgcttttaagatgatggaag |
105 |
Q |
| |
|
||||||||| ||||||| |||| |||||||| || ||||||||||| || | ||||||||||| |||| ||| |||||||| ||||||||||||| |
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|
| T |
2528236 |
atggtgttgttagagattattggaggaaggaaaaactatgatcctaaagaaaattcggagaaatcgcattttccttcttttgcttataagatgatggaac |
2528137 |
T |
|
| Q |
106 |
aaggtaaaatgagagatatcattgattcagagatgaaaatagatgatgagaatgatgatagggttcattgtgctataaatgttacattgtggtgtataca |
205 |
Q |
| |
|
|||| || ||| |||| | ||||| || ||| ||||||| ||| ||| ||||||| || ||| | |||| | |||||| |||| | ||||||||| |
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|
| T |
2528136 |
aagggaagatggaagatttaattgactctgaggtgaaaat--atg-tgaaaatgatgtgagagttgagattgctttgaatgttgcatttttgtgtataca |
2528040 |
T |
|
| Q |
206 |
ggaagacatgtctatgagaccttccatgacaaaagttgttcaaatgttagagggtct |
262 |
Q |
| |
|
||||| |||| | |||| ||||| |||| |||||||| |||||| | |||||||| |
|
|
| T |
2528039 |
agaagatatgtgtttgaggccttctatgaataaagttgtacaaatgcttgagggtct |
2527983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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