View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7116_low_13 (Length: 412)
Name: NF7116_low_13
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7116_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 13 - 396
Target Start/End: Complemental strand, 38573558 - 38573175
Alignment:
| Q |
13 |
aatatactctcgcacctaaagtgtaaaacagaaatcaaattataataagtaagaaagaaagattacatgtaaaatgtagtttagttcaccgttagtaccg |
112 |
Q |
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| T |
38573558 |
aatatactctcgcacctaaagtgtaaaacagaaatcaaattataataagtaagaaagaaagattacatgtaaaatgtagtttagttcaccgttagtaccg |
38573459 |
T |
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| Q |
113 |
tggtcaatttatttaacgtgccatcaatttgtatgaaataggcctgcaaagaacaacattattcagttcaatacatcataggctaattcatggaaatgga |
212 |
Q |
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| T |
38573458 |
tggtcaatttatttaacgtgccatcaatttgtatgaaataggcctgcaaagaacaacattattcagttcaatacatcataggctaattcatggaaatgga |
38573359 |
T |
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| Q |
213 |
ttagggtgcagtaatgactgtatgcaatcagctgcagtcaacactgtaaaactgtccgatcttgatcagacagcttcaacgccgactgtcgccaaatgag |
312 |
Q |
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| T |
38573358 |
ttagggtgcagtaatgactgtatgcaatcaactgcagtcaacactgtaaaactgtccgatcttgatcagacagcttcaacgccgactgacgccaaatgag |
38573259 |
T |
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| Q |
313 |
agattttcatttattttagtctctaatttctattggtttttctggtagccaactttatgtgttgcaaaatgaaatgaagaattt |
396 |
Q |
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| T |
38573258 |
agattttcatttattttagtctctaatttctattggtttttctggtagccaactttatgtgttgcaaaatgaaatgaagaattt |
38573175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 33808058 - 33808112
Alignment:
| Q |
108 |
taccgtggtcaatttatttaacgtgccatcaatttgtatgaaataggcctgcaaa |
162 |
Q |
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| T |
33808058 |
taccgtggttaatttgtttaatgtgccatcaatttgcatgaaataagcctgcaaa |
33808112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 33867527 - 33867581
Alignment:
| Q |
108 |
taccgtggtcaatttatttaacgtgccatcaatttgtatgaaataggcctgcaaa |
162 |
Q |
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| T |
33867527 |
taccgtggttaatttgtttaatgtgccatcaatttgcatgaaataagcctgcaaa |
33867581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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