View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7116_low_16 (Length: 367)
Name: NF7116_low_16
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7116_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 147 - 353
Target Start/End: Original strand, 33418294 - 33418500
Alignment:
| Q |
147 |
gacataatatctaaaaatcgacatccttagagttggaggtgtagaaattacttctccaaaatatgactaattcatttgtgctaaaggcccaaaaagttta |
246 |
Q |
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| T |
33418294 |
gacataatatctaaaaatcgacatccttagagttggaggtgtagaaattacttctccaaaatatgactaattcatttgtgctaaaggcccaaacagttta |
33418393 |
T |
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| Q |
247 |
caaaaccgtcccactctctccacgtaccagtaaaaaccctagcacaatcaaggatatataaattcacttctaaaccttctccattttcatcacttccacc |
346 |
Q |
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| T |
33418394 |
caaaaccgtcccactctctccacgtaccagtaaaaaccctagcacaaccaaggatatataaattcacttctaaaccttctccattttcatcacttccacc |
33418493 |
T |
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| Q |
347 |
ccaccat |
353 |
Q |
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||||||| |
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| T |
33418494 |
ccaccat |
33418500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 33418185 - 33418275
Alignment:
| Q |
18 |
acaaactcagatgcatgtgtaatgtttataatacatttcaatatgagtattcaacaacaaagtaatttgcatattttacaatatttctaat |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33418185 |
acaaactcagatgcatgtgtaatgtttataatacatttcaatatgagtattcaacaacaaagtaatttgcatattttacaatatttctaat |
33418275 |
T |
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