View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7116_low_19 (Length: 354)
Name: NF7116_low_19
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7116_low_19 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 305
Target Start/End: Complemental strand, 2398522 - 2398236
Alignment:
| Q |
20 |
acgaggaaaactctaaaatgaaactcttagttnnnnnnnnnntatattgactaacaaaaaggaatatcctcaaattcacataatagtattttgttttcct |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
2398522 |
acgaagaaaactctaaaatgaaactcttagttaaaaaaaaa--atattgactaacaaaaaggaacatcctcaaattcacataatagttttttgttttcct |
2398425 |
T |
|
| Q |
120 |
ttctatggatcataccaagatgcatgtcttaggaatctctagtaattttcaactttatgattgtattttagttgtaatattcttatgcatacatttcaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2398424 |
ttctatggatcataccaagatgcatgtcttaggaatctctagtaattttcaactttatgattgtattttagttgtaatattcttatgcatacatttcaaa |
2398325 |
T |
|
| Q |
220 |
tgttaggtgttgattgtgtacttggcagctccctagtcag---tgttatgcagggtttcttggtaacttctagtttattatattgttaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2398324 |
tgttaggtgttgattgtgtacttggcagctccctagtcagtgttgttatgcagggtttcttggtaacttctagtttattatattgttaa |
2398236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 292
Target Start/End: Complemental strand, 38650897 - 38650750
Alignment:
| Q |
149 |
taggaatctctagtaattttcaactttatgattgtattttagt-tg----taatattcttatgcatacatttcaaatgttaggtgttgattgtgtacttg |
243 |
Q |
| |
|
||||||||||| ||| ||| ||||||||||||||||||| || || |||||||||||||||| ||||||| ||||||||||| | | ||||| | | |
|
|
| T |
38650897 |
taggaatctctggtacttt-caactttatgattgtatttcaggctgagcataatattcttatgcatccatttcacatgttaggtgtagctggtgtattcg |
38650799 |
T |
|
| Q |
244 |
gcagctccctagtcagtgttatgcagggtttcttggtaacttctagttt |
292 |
Q |
| |
|
|| | |||||| | |||| |||||| |||| |||||||||||||||||| |
|
|
| T |
38650798 |
gcggttccctatttagtgctatgcacggttccttggtaacttctagttt |
38650750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 292
Target Start/End: Complemental strand, 6942357 - 6942259
Alignment:
| Q |
194 |
taatattcttatgcatacatttcaaatgttaggtgttgattgtgtacttggcagctccctagtcagtgttatgcagggtttcttggtaacttctagttt |
292 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||| | | ||||| | ||| | |||||| | |||| |||||| |||| |||||||||||||||||| |
|
|
| T |
6942357 |
taatattcttatgcatccatttcacatgttaggtgtagctggtgtattcggcggttccctatttagtgctatgcacggttccttggtaacttctagttt |
6942259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 292
Target Start/End: Original strand, 18304729 - 18304827
Alignment:
| Q |
194 |
taatattcttatgcatacatttcaaatgttaggtgttgattgtgtacttggcagctccctagtcagtgttatgcagggtttcttggtaacttctagttt |
292 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||| | | ||||| | ||| | |||||| | |||| |||||| |||| |||||||||||||||||| |
|
|
| T |
18304729 |
taatattcttatgcatccatttcacatgttaggtgtagctggtgtattcggcggttccctatttagtgctatgcacggttccttggtaacttctagttt |
18304827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 292
Target Start/End: Complemental strand, 200818 - 200727
Alignment:
| Q |
201 |
cttatgcatacatttcaaatgttaggtgttgattgtgtacttggcagctccctagtcagtgttatgcagggtttcttggtaacttctagttt |
292 |
Q |
| |
|
||||||||| |||| || ||||||||||| | | ||||| | ||| | |||||| |||||| |||||| |||| ||||||||| |||||||| |
|
|
| T |
200818 |
cttatgcatccattccacatgttaggtgtagctggtgtattcggcggttccctattcagtgctatgcatggttccttggtaacctctagttt |
200727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University