View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7116_low_2 (Length: 758)
Name: NF7116_low_2
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7116_low_2 |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 604; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 20 - 741
Target Start/End: Original strand, 26609666 - 26610385
Alignment:
| Q |
20 |
tctttggcttgtggacaagataatggtctaccattagtaataaaataagtaagatattagcttgacattagcatttgttagttaatgacatgattcatta |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26609666 |
tctttggcttgtggacaagataatggtctaccattagtaataaaataagtaagatattagcttgacattagcatttgttagttaatgacatgattcatta |
26609765 |
T |
|
| Q |
120 |
gggaatgatacgatggagatggatctatacagctcacaaaagtcttcagatttgttttcatcgtggctgcctaatcctaccttgaacatgacatcttatc |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26609766 |
gggaatgatacgatggagatggatctatacagctcacaaaagtcttcagatttgttttcatcgtggctgcctaatcctaccttgaacatgacatcttatc |
26609865 |
T |
|
| Q |
220 |
atgccacaattaacaactcaagtttcatatagaaaataaataagtgaattaactataatcaacgagtgtgtgttgaaggtaggtcttggatatgtggtga |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
26609866 |
atgccacaattaacaactcaagtttcatatagaaaataaataagtgaattatctataatcaatgagtgtgtgttgaaggtaggtcttggatatgtgggga |
26609965 |
T |
|
| Q |
320 |
gtgcattcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttaccgatctctgttcatgttgagcatag |
419 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26609966 |
gtgcattcgtgtctttgttggtgtttattttgtgtgttctgtttacatacgacatctttgtagtctctgatttaccgatctctgttcatgttgagcagag |
26610065 |
T |
|
| Q |
420 |
atttaggttttaataaattttgccgttgnnnnnnntagttgtctaagtgtatggttttaaatcgtggtggcggtcacagcataaaccttcatattgcgaa |
519 |
Q |
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||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| |
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| T |
26610066 |
atttaggttataataaattttgccgttgaaaaaaa-agttgtttaagtgtatggttttaaatcgtggtgtcggtcacaacgtaaaccttcatattgcgaa |
26610164 |
T |
|
| Q |
520 |
aaatatggtcaatgtagttgcaatgttgttttggagacctcaaaatcttcaatagtacannnnnnnnaagggaaatagtacagttgtagactataattta |
619 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
26610165 |
aaatgtggtcaatgtagttgcaatgttgttttggagacctcaaaatcttcaatagtaca-tttttttaagggaaatagtacagttgtagactgtaattta |
26610263 |
T |
|
| Q |
620 |
aaccaatggttgtaccggttatgtggatttatgtagagacccgagtttgatttgtatataatacatttttgaagtaggttaacaaaaattaaatgtttgt |
719 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26610264 |
aaacaatggttgtaccggttatgtggatttatgtagagacccgagtttgatttgtatataatacatttttgaagtaggttaacaaaaattaagtgtttgt |
26610363 |
T |
|
| Q |
720 |
ttgtcttcacggtgaatatatt |
741 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
26610364 |
ttgtcttcacggtgaatatatt |
26610385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 289 - 406
Target Start/End: Complemental strand, 8987700 - 8987582
Alignment:
| Q |
289 |
gtgttgaaggtaggtcttggatatgtggtgagtgca-ttcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctct |
387 |
Q |
| |
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|||||||||||||||||| | | ||| || ||| | ||||||||||||||||||||||||||| |||||| | || ||| | ||| ||||||||| |
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| T |
8987700 |
gtgttgaaggtaggtcttaggtgggtgctgtgtgtatttcgtgtctttattggtgtttattttgggtgttccgcatatatatggtgccttcgtagtctct |
8987601 |
T |
|
| Q |
388 |
gatttaccgatctctgttc |
406 |
Q |
| |
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|||||||| |||||||||| |
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| T |
8987600 |
gatttaccaatctctgttc |
8987582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 324 - 444
Target Start/End: Complemental strand, 21301 - 21181
Alignment:
| Q |
324 |
attcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttaccgatctctgttcatgttgagcatagattt |
423 |
Q |
| |
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|||||||||||||||| |||| |||||| |||||| | ||| |||||||| |||||||||||||||||||| | | | ||||| | ||| ||| |||| |
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| T |
21301 |
attcgtgtctttattgatgttcattttgggtgttccgcctatatacgacacctttgtagtctctgatttacaggtttttgttcgtcttgtgcagagatcg |
21202 |
T |
|
| Q |
424 |
aggttttaataaattttgccg |
444 |
Q |
| |
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|| ||| |||||||||||||| |
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| T |
21201 |
agttttaaataaattttgccg |
21181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 335 - 414
Target Start/End: Original strand, 21029981 - 21030060
Alignment:
| Q |
335 |
tattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttaccgatctctgttcatgttgag |
414 |
Q |
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||||||||||||||||| |||||| | ||||||||| || ||||||||||| |||||||||| |||| ||||||||||| |
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| T |
21029981 |
tattggtgtttattttgggtgttccgcctacatacggcacctttgtagtctttgatttaccggtctcgattcatgttgag |
21030060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 385
Target Start/End: Original strand, 5746925 - 5747022
Alignment:
| Q |
289 |
gtgttgaaggtaggtcttggatatgtggtgagtgca-ttcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtct |
385 |
Q |
| |
|
|||||||||||||||||| | || ||| || ||| | ||||||||||||||| |||| ||||| |||||| | ||| ||||||| ||||||||||| |
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| T |
5746925 |
gtgttgaaggtaggtcttaggtaggtgatgtgtgtaattcgtgtctttattgatgttcattttaggtgttccgcctatatacgacgcctttgtagtct |
5747022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 33283733 - 33283620
Alignment:
| Q |
289 |
gtgttgaaggtaggtcttggatatgtggtgagtgcattcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctg |
388 |
Q |
| |
|
|||||||| ||||||||||||| ||| || | |||||||| ||||| ||||||||||||| ||||| ||||| |||| || ||||| || |||||| |
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| T |
33283733 |
gtgttgaaattaggtcttggataggtgatgtaggtattcgtgtttttatcggtgtttattttggatgttccgtctatatacaacgtctttataatctctg |
33283634 |
T |
|
| Q |
389 |
atttaccgatctct |
402 |
Q |
| |
|
|||||||||||||| |
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| T |
33283633 |
atttaccgatctct |
33283620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 328 - 416
Target Start/End: Complemental strand, 43344593 - 43344505
Alignment:
| Q |
328 |
gtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttaccgatctctgttcatgttgagca |
416 |
Q |
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|||||||||||||||||||||||| || ||| | ||| ||||| || ||||||||||||| ||||||| ||||| ||| | ||||||| |
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| T |
43344593 |
gtgtctttattggtgtttattttgagttttccgcctatatacggcacatttgtagtctctggtttaccggtctctattcgtcttgagca |
43344505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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