View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7116_low_20 (Length: 354)
Name: NF7116_low_20
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7116_low_20 |
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| [»] scaffold0352 (2 HSPs) |
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Alignment Details
Target: scaffold0352 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 5317 - 5166
Alignment:
| Q |
17 |
gtgttcccagaaatgcaaccatgaatggatagtggatttatccgagcttcagcgcgtcatggaagaactttggcggtggttgatggatggcacgacggtg |
116 |
Q |
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| T |
5317 |
gtgttcccagaaatgcaaccatgaatggatagtggatttatccgagcttcagcgcgtcatggaagaactttggcggtggttgatggatggcacggcggtg |
5218 |
T |
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| Q |
117 |
atatggtcggttccgattggaacctcgtgtgggttgaagggagttagtttgg |
168 |
Q |
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| T |
5217 |
gtatggtcggttccgattggaacctcgtgtgggttgaagggagtttgtttgg |
5166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 237 - 336
Target Start/End: Complemental strand, 5097 - 4998
Alignment:
| Q |
237 |
gtctatcatctttaaatgaatgggtaggagttgatgttaatgttgtgtttgaattttaatagaagaagaacctggagagaagaagaagcatgatgggaag |
336 |
Q |
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| T |
5097 |
gtctatcatctttgaatgaatgggtaggagttgatgttaatgttgcgtttgaattttaatagaagaagaacctggagagaagaagaagcatgatgggaag |
4998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 35368151 - 35368301
Alignment:
| Q |
17 |
gtgttcccagaaatgcaaccatgaatggatagtggatttatccgagcttcagcgcgtcatggaagaactttggcggtggttgatggatggcacgacggtg |
116 |
Q |
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| T |
35368151 |
gtgttcccagaaatgcaaccatgaatggatagtggatttatccgagcttcagcgcgtcatggaagaactttggcggtggttgatgg-tggcacgacggtg |
35368249 |
T |
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| Q |
117 |
atatggtcggttccgattggaacctcgtgtgggttgaagggagttagtttgg |
168 |
Q |
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| T |
35368250 |
gtatggtcggttccgattggaacctcgtgtgggttgaagggagtttgtttgg |
35368301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 235 - 336
Target Start/End: Original strand, 35368368 - 35368469
Alignment:
| Q |
235 |
tggtctatcatctttaaatgaatgggtaggagttgatgttaatgttgtgtttgaattttaatagaagaagaacctggagagaagaagaagcatgatggga |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35368368 |
tggtctatcatctttaaatgaatgggtaggagttgatgttaatgttgtgtttgaatcttaatagaagaagaacctggagagaagaagaagcatgatggga |
35368467 |
T |
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| Q |
335 |
ag |
336 |
Q |
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|| |
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| T |
35368468 |
ag |
35368469 |
T |
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