View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7116_low_21 (Length: 337)
Name: NF7116_low_21
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7116_low_21 |
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| [»] scaffold1017 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 16143766 - 16144054
Alignment:
| Q |
17 |
agattatacctttaaacatattttcgtataactttgtcatattattagtgttattaaataagataagaatttgcaaacaaagttagatagttcaaaggaa |
116 |
Q |
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| T |
16143766 |
agattatacctttaaacatattttggtataactttgtcatattattagtgttattaaacaagataagaatttgcaaacaaagttagatagttcaaaggaa |
16143865 |
T |
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| Q |
117 |
aaaagaacaagtatgttaggaaatcaaagaagaggtgagctagaaccgagccaggacgggttcagatataatcaatttacagagttgaatgtatttcacg |
216 |
Q |
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| T |
16143866 |
aaaagaacgagtatgttaggaaatcaaagaagaggtgagctagaaccgagccaggacgggttcagatataatcaatttagagagttgaatgtatttcacg |
16143965 |
T |
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| Q |
217 |
agatcaattctgtaatgttgtaaaatacacgtttattgggaggtaacctagtattaataccctttctttttattttcagtcatttatag |
305 |
Q |
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| T |
16143966 |
agatcaattctctaatgttgtaaaatacacatttattgggaggtaacctagtattaataccctttctttttattttcagtcatttatag |
16144054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 38340090 - 38340159
Alignment:
| Q |
19 |
attatacctttaaacatattttcgtataactttgtcatattattagtgttattaaataagataagaattt |
88 |
Q |
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| T |
38340090 |
attatacccttcaacatattttcctataataaagttatattattggtgttattaaaaaagataagaattt |
38340159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1017 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1017
Description:
Target: scaffold1017; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 2127 - 2058
Alignment:
| Q |
19 |
attatacctttaaacatattttcgtataactttgtcatattattagtgttattaaataagataagaattt |
88 |
Q |
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| T |
2127 |
attatacccttaaacatatttttctataataatgttatattgtttgtgttattaaaaaagataagaattt |
2058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 7976010 - 7975945
Alignment:
| Q |
19 |
attatacctttaaacatattttcgtataactttgtcatattattagtgttattaaataagataaga |
84 |
Q |
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| T |
7976010 |
attatacctttaaacaaattttcttataataatgtcatattgttggtgttattaaaaaatataaga |
7975945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 40358459 - 40358528
Alignment:
| Q |
19 |
attatacctttaaacatattttcgtataactttgtcatattattagtgttattaaataagataagaattt |
88 |
Q |
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| T |
40358459 |
attatacccttaaacaaattttcctataacaatgttatattgttgatgttattaaaaaagataagaattt |
40358528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 21585913 - 21585844
Alignment:
| Q |
19 |
attatacctttaaacatattttcgtataactttgtcatattattagtgttattaaataagataagaattt |
88 |
Q |
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| T |
21585913 |
attatacctttaaacaacttttcgtataataatgttatattgttactattattaaaaaagataagaattt |
21585844 |
T |
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