View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7116_low_22 (Length: 333)
Name: NF7116_low_22
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7116_low_22 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 333
Target Start/End: Original strand, 34380380 - 34380706
Alignment:
| Q |
7 |
tcgaagaatattggcgacttctttgtaacgatatacgaacaggaactctcgacctccttatcactgacgattcggtgagagaggctgttatgaaaattct |
106 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34380380 |
tcgaaaaaaattggagacttctttgtaacgatatacgaacaggaactctcgacctccttatcactgacgattcggtgagagaggctgttatgaaaattct |
34380479 |
T |
|
| Q |
107 |
taaacctaacaaaaatcttgctgattttgttgaaggtgaatgtaacaaaggttcttggcaaggtattataactaggttgtggcctaatactaagtatgta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34380480 |
taaacctaacaaaaatcttgctgattttgttgaaggtgaatgtaacaaaggttcttggcaaggtattataactaggttgtggcctaatactaagtatgta |
34380579 |
T |
|
| Q |
207 |
gatgttattgtgacaggaacaatgtcacagtacattcctactttggattactatagtaatgggttaccactagtttgtactatgtatgcatctagtgaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34380580 |
gatgttattgtgacaggaacaatgtcacagtacattcctactttggattactatagtaatgggttaccactagtttgtactatgtatgcatctagtgaat |
34380679 |
T |
|
| Q |
307 |
gttactttggtgttaaccttaatcctc |
333 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
34380680 |
gttactttggtgttaaccttaatcctc |
34380706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 158 - 323
Target Start/End: Complemental strand, 23956100 - 23955935
Alignment:
| Q |
158 |
ttcttggcaaggtattataactaggttgtggcctaatactaagtatgtagatgttattgtgacaggaacaatgtcacagtacattcctactttggattac |
257 |
Q |
| |
|
||||||||| || || || |||||| | |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| ||||||| | |
|
|
| T |
23956100 |
ttcttggcaggggataattactaggctttggcctaatactaagtatgtggatgttattgtgactggaacaatgtcacagtatattcctattttggatcat |
23956001 |
T |
|
| Q |
258 |
tatagtaatgggttaccactagtttgtactatgtatgcatctagtgaatgttactttggtgttaac |
323 |
Q |
| |
|
||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23956000 |
tatagcaatggtttaccacttgtttgcactatgtatgcttctagtgaatgttactttggtgttaac |
23955935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 316
Target Start/End: Complemental strand, 15837081 - 15836942
Alignment:
| Q |
177 |
actaggttgtggcctaatactaagtatgtagatgttattgtgacaggaacaatgtcacagtacattcctactttggattactatagtaatgggttaccac |
276 |
Q |
| |
|
|||||||| |||||||| | ||||||||| ||||||||||| || ||||||||||| ||||| ||||| | ||||||||| ||||| ||||| | || | |
|
|
| T |
15837081 |
actaggttatggcctaacagtaagtatgttgatgttattgttaccggaacaatgtcgcagtatattccgattttggattattatagcaatggtcttcctc |
15836982 |
T |
|
| Q |
277 |
tagtttgtactatgtatgcatctagtgaatgttactttgg |
316 |
Q |
| |
|
| || |||||||||||||| ||| ||| ||||| ||||| |
|
|
| T |
15836981 |
ttgtgtgtactatgtatgcttcttctgagtgttattttgg |
15836942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University