View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7116_low_23 (Length: 315)
Name: NF7116_low_23
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7116_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 3743786 - 3744065
Alignment:
| Q |
16 |
atagtaataaggatgctttgggtttgaaagcatggaagtatagacaaactcaacagattctccgtctccggcgccggttatggtgtcattgtgacgaccg |
115 |
Q |
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| T |
3743786 |
atagtaataaggatgctttgggtttgaaagcatggaagtatagacaaactcaacagattctccgtctccggcgccggttatggtgtcattgtgacgaccg |
3743885 |
T |
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| Q |
116 |
agaatgagtggactcggtcgccggagtctgtcaccgtcgaaagagtgagaaactaaacaataagaaaaacgattacccaaatgaggtgagagagtagaga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3743886 |
agaatgagtggactcggtcgccggagtctgtcaccgtcgaaagagtgagaaactaaacaataagaaaaacgattacccaaatgaggtgagagagtagaga |
3743985 |
T |
|
| Q |
216 |
gctgtgccggaagagataaaattccgcggccaaaaccagctacgccggtgggttcagcgagtgcagtatgagcacaacca |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3743986 |
gctgtgccggaagagataaaattccgcggccaaaaccagctacgccggtgggttcagcaagtgcagtatgagcacaacca |
3744065 |
T |
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