View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7116_low_27 (Length: 294)
Name: NF7116_low_27
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7116_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 41993074 - 41992797
Alignment:
| Q |
1 |
aaatagaaagaaccaatcttgttctattttcatggaaccaagcttggaacttctaagtcttaaaaagatctcaacttaactaactacttagcatgtgttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41993074 |
aaatagaaagaaccaatcttgttctattttcatggaaccaagcttggaacttctaagtcttaaaaagatctcaacttaactaactacttagcatgtgttt |
41992975 |
T |
|
| Q |
101 |
ggttgaacggtggacactgctaccacgagttcaaagctctctcaatgcgaattttagaagttccaatgtgtagcttctgatccactgtgatttttcgccg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41992974 |
ggttgaacggtggacactgctaccacgagttcaaagcactctcaatgcgaattttagaagttccaatgtgtagcttctgatccactgtgatttttcgccg |
41992875 |
T |
|
| Q |
201 |
cga-ttttagtgtttaccaaacacatgtgtactttcaattactcatgccaacatagaagcatgaccacacaccttctt |
277 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41992874 |
cgatttttagtgtttaccaaacacatgtgtactttcaattactcatgccaacatagaagcatgaccacacaccttctt |
41992797 |
T |
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