View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7116_low_28 (Length: 275)

Name: NF7116_low_28
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7116_low_28
NF7116_low_28
[»] chr3 (9 HSPs)
chr3 (13-254)||(5823262-5823502)
chr3 (26-254)||(5818513-5818740)
chr3 (26-253)||(54545975-54546200)
chr3 (17-254)||(2817254-2817491)
chr3 (34-130)||(4579264-4579360)
chr3 (26-180)||(24659136-24659287)
chr3 (40-197)||(31204781-31204936)
chr3 (14-70)||(25877086-25877142)
chr3 (164-222)||(35977103-35977161)
[»] chr6 (10 HSPs)
chr6 (13-253)||(27878696-27878935)
chr6 (26-254)||(27873990-27874217)
chr6 (26-254)||(1234791-1235018)
chr6 (26-254)||(26976131-26976358)
chr6 (25-249)||(30986603-30986830)
chr6 (26-213)||(18968007-18968194)
chr6 (72-249)||(30966747-30966923)
chr6 (31-218)||(21966677-21966860)
chr6 (13-77)||(30967674-30967738)
chr6 (45-195)||(23012520-23012667)
[»] chr8 (3 HSPs)
chr8 (13-254)||(9444079-9444319)
chr8 (26-254)||(9439372-9439599)
chr8 (43-99)||(4799315-4799371)
[»] chr5 (5 HSPs)
chr5 (13-254)||(41718500-41718740)
chr5 (26-254)||(34360046-34360273)
chr5 (26-254)||(41723226-41723453)
chr5 (26-254)||(29585300-29585527)
chr5 (45-254)||(34352338-34352546)
[»] chr4 (14 HSPs)
chr4 (13-254)||(42265993-42266233)
chr4 (13-254)||(48701808-48702048)
chr4 (32-254)||(24520031-24520252)
chr4 (24-254)||(42270712-42270941)
chr4 (26-254)||(48697131-48697359)
chr4 (13-253)||(30950170-30950408)
chr4 (25-253)||(30945476-30945702)
chr4 (26-249)||(10427376-10427597)
chr4 (39-235)||(48782850-48783031)
chr4 (151-249)||(1979279-1979375)
chr4 (37-105)||(30165900-30165968)
chr4 (92-132)||(1979565-1979604)
chr4 (13-67)||(21515462-21515516)
chr4 (28-105)||(36615361-36615438)
[»] chr2 (11 HSPs)
chr2 (35-254)||(5198664-5198882)
chr2 (13-190)||(825632-825809)
chr2 (14-254)||(15602967-15603206)
chr2 (26-190)||(830288-830452)
chr2 (33-249)||(28715857-28716070)
chr2 (35-213)||(30396920-30397096)
chr2 (26-130)||(31592910-31593014)
chr2 (156-249)||(8004167-8004259)
chr2 (154-247)||(13843921-13844014)
chr2 (46-106)||(12175768-12175828)
chr2 (26-249)||(13840240-13840456)
[»] chr7 (6 HSPs)
chr7 (31-249)||(16183636-16183852)
chr7 (26-253)||(30235112-30235339)
chr7 (13-249)||(8139951-8140183)
chr7 (13-213)||(8138447-8138645)
chr7 (26-130)||(36528415-36528518)
chr7 (39-185)||(5102606-5102749)
[»] scaffold0074 (1 HSPs)
scaffold0074 (26-213)||(27226-27413)
[»] chr1 (4 HSPs)
chr1 (26-213)||(4130215-4130401)
chr1 (26-249)||(46191327-46191546)
chr1 (31-213)||(30697120-30697300)
chr1 (26-130)||(364683-364786)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 5823262 - 5823502
Alignment:
Q  13 gctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823262 gctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgg 5823361  T
Q  113 aaacccctcaacaaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggaga 212  Q
    |||||||||||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823362 aaacccctcaacaaat-aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggaga 5823460  T
Q  213 gtacaattaccactctctcttataaataggagaatacaaact 254  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  5823461 gtacaattaccactctctcttataaataggagaatactaact 5823502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 26 - 254
Target Start/End: Original strand, 5818513 - 5818740
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5818513 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaact 5818612  T
Q  126 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 225  Q
    ||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5818613 aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 5818711  T
Q  226 tctctcttataaataggagaatacaaact 254  Q
    |||||||||||||||||||||||| ||||    
T  5818712 tctctcttataaataggagaatactaact 5818740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 26 - 253
Target Start/End: Complemental strand, 54546200 - 54545975
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  54546200 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatattt-acgtggaaacccctcaaca 54546102  T
Q  126 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 225  Q
    ||||| |||       ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  54546101 aataa-ggggaaaaaaccacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccac 54546003  T
Q  226 tctctcttataaataggagaatacaaac 253  Q
    ||||||||||||||||||||||||||||    
T  54546002 tctctcttataaataggagaatacaaac 54545975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 2817254 - 2817491
Alignment:
Q  17 tgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaac 116  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2817254 tgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaac 2817353  T
Q  117 ccctcaacaaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtac 216  Q
    ||||||||||||||  ||       |||| ||||||||||| |||||| |||||||||||||||||||||| || |||||||||| ||||||||||||||    
T  2817354 ccctcaacaaataa--gggaaaaaaccacagggcaagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtac 2817451  T
Q  217 aattacca--ctctctcttataaataggagaatacaaact 254  Q
    ||| ||||  ||||||||||||||||||||||||| ||||    
T  2817452 aatcaccactctctctcttataaataggagaatactaact 2817491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 34 - 130
Target Start/End: Complemental strand, 4579360 - 4579264
Alignment:
Q  34 accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4579360 accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 4579264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 24659136 - 24659287
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24659136 tgttaggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaaca 24659235  T
Q  126 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga 180  Q
    ||| |||||       |||||||||||||||  ||||||||||||||||||||||    
T  24659236 aat-aaggggaaaaaaccacggggcaagagt--agaactttcactaagtggaaga 24659287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 197
Target Start/End: Original strand, 31204781 - 31204936
Alignment:
Q  40 gtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnn 139  Q
    |||||||||||||| ||||||  ||||| |||||| || |||||||||||||||| |||||||||| |||||||||||||||||||||| ||| |         
T  31204781 gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaaat-aagaggaaaa 31204877  T
Q  140 nnccacgg-ggcaagagtagagaactttcactaagtggaagaaattacaggacctctct 197  Q
       ||||| ||||| ||||||||||||||||||||||| | ||||||||  ||||||||    
T  31204878 aatcacggaggcaatagtagagaactttcactaagtgggaaaaattacaaaacctctct 31204936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 25877142 - 25877086
Alignment:
Q  14 ctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataa 70  Q
    |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  25877142 ctctgataccactgttaggtaccagaataacataatattattacgcaactaaaataa 25877086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 35977161 - 35977103
Alignment:
Q  164 tttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattac 222  Q
    ||||||||||||||| |||||||| ||| ||||||||| ||||||||||| ||||||||    
T  35977161 tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac 35977103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 27878696 - 27878935
Alignment:
Q  13 gctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878696 gctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgg 27878795  T
Q  113 aaacccctcaacaaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggaga 212  Q
    |||||||||||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27878796 aaacccctcaacaaat-aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggaga 27878894  T
Q  213 gtacaattaccactctctcttataaataggagaatacaaac 253  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27878895 gtacaattaccactctctcttataaataggagaatacaaac 27878935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 26 - 254
Target Start/End: Original strand, 27873990 - 27874217
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27873990 tgttaggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 27874089  T
Q  126 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 225  Q
    |||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27874090 aataaagggaaaaaa-ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac 27874188  T
Q  226 tctctcttataaataggagaatacaaact 254  Q
    |||||||||||||||||||||||||||||    
T  27874189 tctctcttataaataggagaatacaaact 27874217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 26 - 254
Target Start/End: Complemental strand, 1235018 - 1234791
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1235018 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 1234919  T
Q  126 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 225  Q
    ||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1234918 aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac 1234820  T
Q  226 tctctcttataaataggagaatacaaact 254  Q
    |||||||||||||||||||||||| ||||    
T  1234819 tctctcttataaataggagaatactaact 1234791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 26 - 254
Target Start/End: Original strand, 26976131 - 26976358
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976131 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 26976230  T
Q  126 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 225  Q
    ||||| |||       ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976231 aataa-ggggaaaaaaccaaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 26976329  T
Q  226 tctctcttataaataggagaatacaaact 254  Q
    |||||||||||||||||||||||| ||||    
T  26976330 tctctcttataaataggagaatactaact 26976358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 30986830 - 30986603
Alignment:
Q  25 ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaa---cccctc 121  Q
    |||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |||||||||   ||||||    
T  30986830 ctgttaggtatcagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaatattt-acgtggaaagtacccctc 30986732  T
Q  122 aacaaataaagggnnnnnnn-ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaatt 220  Q
    ||||||||| |          ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||    
T  30986731 aacaaataaggaaaaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaatt 30986632  T
Q  221 accactctctcttataaataggagaatac 249  Q
    ||||||||||||| ||||||| |||||||    
T  30986631 accactctctcttgtaaatagaagaatac 30986603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 26 - 213
Target Start/End: Complemental strand, 18968194 - 18968007
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  18968194 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaaca 18968095  T
Q  126 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagag 213  Q
    ||| |||||       |||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||||||||| |||||||||||    
T  18968094 aat-aaggggaaaaaaccacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagag 18968007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 72 - 249
Target Start/End: Complemental strand, 30966923 - 30966747
Alignment:
Q  72 agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnnnccacggggcaagagtagagaactttcacta 171  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||         |||||||||||||||||||||||||||||    
T  30966923 agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcacta 30966825  T
Q  172 agtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatac 249  Q
    ||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||||||    
T  30966824 agtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaatac 30966747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 31 - 218
Target Start/End: Complemental strand, 21966860 - 21966677
Alignment:
Q  31 ggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 130  Q
    ||||||| |||||| ||| ||||||||||| ||||| ||| | | ||||||||||||||| |||| | ||||||| | ||||||||||||||| ||||||    
T  21966860 ggtaccaaagtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataa 21966763  T
Q  131 agggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaa 218  Q
    ||||        || ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| | ||| ||||||||||    
T  21966762 agggaaaaat--catggggcaagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaagagagtacaa 21966677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 30967738 - 30967674
Alignment:
Q  13 gctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacga 77  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  30967738 gctctgataccactgttaggtaccagagtaacaaaatattatcaagcagctaaaataagagacga 30967674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 195
Target Start/End: Original strand, 23012520 - 23012667
Alignment:
Q  45 aaaatattatcacgcaactaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnnncc 143  Q
    |||||||||||||||||||||||||||||||||| |||||| ||| |||||||||| || ||||||||||||| | || |||||| |||||       ||    
T  23012520 aaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacgtggaaactcgtc-acaaattaaggg-gaaaaacc 23012616  T
Q  144 acggggcaagagtagagaactttcactaagtggaagaaattacaggacctct 195  Q
    |  |||||||||||||||||||||||||||||  ||||||| || |||||||    
T  23012617 a-tgggcaagagtagagaactttcactaagtgagagaaatttcaagacctct 23012667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 9444079 - 9444319
Alignment:
Q  13 gctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444079 gctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgg 9444178  T
Q  113 aaacccctcaacaaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggaga 212  Q
    |||||||||||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444179 aaacccctcaacaaat-aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggaga 9444277  T
Q  213 gtacaattaccactctctcttataaataggagaatacaaact 254  Q
    |||||| |||||||||||||||||||||||||||||| ||||    
T  9444278 gtacaaataccactctctcttataaataggagaatactaact 9444319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 26 - 254
Target Start/End: Original strand, 9439372 - 9439599
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439372 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 9439471  T
Q  126 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 225  Q
    ||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9439472 aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac 9439570  T
Q  226 tctctcttataaataggagaatacaaact 254  Q
    |||||||||||||||||||||||| ||||    
T  9439571 tctctcttataaataggagaatactaact 9439599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
Q  43 acaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacaca 99  Q
    ||||||||||||||| |  ||||||||||||| |||||||||| || ||||||||||    
T  4799371 acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca 4799315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 41718740 - 41718500
Alignment:
Q  13 gctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718740 gctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgg 41718641  T
Q  113 aaacccctcaacaaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggaga 212  Q
    |||||||||||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718640 aaacccctcaacaaat-aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggaga 41718542  T
Q  213 gtacaattaccactctctcttataaataggagaatacaaact 254  Q
    |||||| |||||||||||||||||||||||||||||| ||||    
T  41718541 gtacaaataccactctctcttataaataggagaatactaact 41718500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 26 - 254
Target Start/End: Complemental strand, 34360273 - 34360046
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34360273 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaaca 34360174  T
Q  126 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 225  Q
    ||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34360173 aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 34360075  T
Q  226 tctctcttataaataggagaatacaaact 254  Q
    |||||||||||||||||||||||| ||||    
T  34360074 tctctcttataaataggagaatactaact 34360046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 26 - 254
Target Start/End: Complemental strand, 41723453 - 41723226
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723453 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 41723354  T
Q  126 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 225  Q
    ||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41723353 aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac 41723255  T
Q  226 tctctcttataaataggagaatacaaact 254  Q
    |||||||||||||||||||||||| ||||    
T  41723254 tctctcttataaataggagaatactaact 41723226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 26 - 254
Target Start/End: Original strand, 29585300 - 29585527
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585300 tgttaggtatcagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 29585399  T
Q  126 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 225  Q
    ||||| |||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29585400 aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccac 29585498  T
Q  226 tctctcttataaataggagaatacaaact 254  Q
    |||||||||||||||||||||||| ||||    
T  29585499 tctctcttataaataggagaatactaact 29585527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 45 - 254
Target Start/End: Complemental strand, 34352546 - 34352338
Alignment:
Q  45 aaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnnncca 144  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       |||    
T  34352546 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-ggggaaaaaacca 34352448  T
Q  145 cggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggag 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352447 cggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggag 34352348  T
Q  245 aatacaaact 254  Q
    ||||| ||||    
T  34352347 aatactaact 34352338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 42266233 - 42265993
Alignment:
Q  13 gctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgg 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266233 gctctgataccactgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgg 42266134  T
Q  113 aaacccctcaacaaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggaga 212  Q
    |||||||||||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42266133 aaacccctcaacaaat-aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggaga 42266035  T
Q  213 gtacaattaccactctctcttataaataggagaatacaaact 254  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42266034 gtacaattaccactctctcttataaataggagaatacaaact 42265993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 48701808 - 48702048
Alignment:
Q  13 gctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701808 gctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgg 48701907  T
Q  113 aaacccctcaacaaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggaga 212  Q
    |||||||||||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701908 aaacccctcaacaaat-aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggaga 48702006  T
Q  213 gtacaattaccactctctcttataaataggagaatacaaact 254  Q
    |||||| |||||||||||||||||||||||||||||| ||||    
T  48702007 gtacaaataccactctctcttataaataggagaatactaact 48702048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 32 - 254
Target Start/End: Original strand, 24520031 - 24520252
Alignment:
Q  32 gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaa 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  24520031 gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa- 24520129  T
Q  132 gggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctc 231  Q
    |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520130 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctc 24520229  T
Q  232 ttataaataggagaatacaaact 254  Q
    |||||||||||||||||| ||||    
T  24520230 ttataaataggagaatactaact 24520252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 24 - 254
Target Start/End: Complemental strand, 42270941 - 42270712
Alignment:
Q  24 actgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 123  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270941 actgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 42270842  T
Q  124 caaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacc 223  Q
    ||||||| |||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42270841 caaataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc 42270743  T
Q  224 actctctcttataaataggagaatacaaact 254  Q
    |||||||||||||||||||||||||||||||    
T  42270742 actctctcttataaataggagaatacaaact 42270712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 26 - 254
Target Start/End: Original strand, 48697131 - 48697359
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697131 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 48697230  T
Q  126 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 225  Q
    ||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48697231 aataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac 48697330  T
Q  226 tctctcttataaataggagaatacaaact 254  Q
    |||||||||||||||||||||||| ||||    
T  48697331 tctctcttataaataggagaatactaact 48697359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 30950170 - 30950408
Alignment:
Q  13 gctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  30950170 gctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtgg 30950269  T
Q  113 aaacccctcaacaaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggaga 212  Q
    ||||||||||||||||||  ||       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |    
T  30950270 aaacccctcaacaaataa--gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaa 30950367  T
Q  213 gtacaattaccactctctcttataaataggagaatacaaac 253  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30950368 gtacaattaccactctctcttataaataggagaatacaaac 30950408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 25 - 253
Target Start/End: Original strand, 30945476 - 30945702
Alignment:
Q  25 ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 124  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945476 ctgttaggtatcagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 30945575  T
Q  125 aaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacca 224  Q
    ||||||  ||        |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  30945576 aaataa--gggaaaaaatcacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattacca 30945673  T
Q  225 ctctctcttataaataggagaatacaaac 253  Q
    |||||||||||||||||||||||||||||    
T  30945674 ctctctcttataaataggagaatacaaac 30945702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 26 - 249
Target Start/End: Complemental strand, 10427597 - 10427376
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10427597 tgttaggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaaca 10427498  T
Q  126 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagagtacaattacca 224  Q
    ||| |||||       | |||||| || |||||| |||||||||||||||||||| ||||||| ||| ||||||||| |||||||||||   |||||||     
T  10427497 aat-aaggggaaaaaactacggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc- 10427400  T
Q  225 ctctctcttataaataggagaatac 249  Q
    |||||||||  ||||||||||||||    
T  10427399 ctctctctt-gaaataggagaatac 10427376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 235
Target Start/End: Complemental strand, 48783031 - 48782850
Alignment:
Q  39 agtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnn 138  Q
    |||| |||||||||||||||| | |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||   ||||||||||||||||        
T  48783031 agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaata-tttacgtggaaatttctcaacaaataaagggaaaa 48782933  T
Q  139 nnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttat 235  Q
        || |||         |||||||||||||||||||||||||||| | ||||||||||||| |||| |  |||||||||||||||||||||||||    
T  48782932 a---catggg---------gagaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat 48782850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 249
Target Start/End: Complemental strand, 1979375 - 1979279
Alignment:
Q  151 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatac 249  Q
    ||||||||| |||||||| |||| ||||||||||||| |||||||||  || | ||||||| ||| | |||||||||||||||||||| ||||||||||    
T  1979375 aagagtagataactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaatac 1979279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 30165968 - 30165900
Alignment:
Q  37 agagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattt 105  Q
    |||||||||||||| |||||| |||||||||||||| | ||||||| | ||| |||||||| |||||||    
T  30165968 agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatattt 30165900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 1979604 - 1979565
Alignment:
Q  92 aacacacaatattttacgtggaaacccctcaacaaataaag 132  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  1979604 aacacacaatattt-acgtggaaacccctcaacaaataaag 1979565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 21515462 - 21515516
Alignment:
Q  13 gctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaa 67  Q
    |||||||||||| |||| |||| |||||||||||| |||| |||| |||||||||    
T  21515462 gctctgataccattgttgggtatcagagtaacaaagtattttcacacaactaaaa 21515516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 36615361 - 36615438
Alignment:
Q  28 ttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattt 105  Q
    |||||||| ||||||| ||||||||||| | ||  |||||||||| | |||||||||| ||| ||||| ||| |||||    
T  36615361 ttaggtactagagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattattt 36615438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 35 - 254
Target Start/End: Original strand, 5198664 - 5198882
Alignment:
Q  35 ccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaaggg 134  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5198664 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-ggg 5198762  T
Q  135 nnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctctta 234  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5198763 gaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctctta 5198862  T
Q  235 taaataggagaatacaaact 254  Q
    ||||||||||||||| ||||    
T  5198863 taaataggagaatactaact 5198882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 825809 - 825632
Alignment:
Q  13 gctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  825809 gctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgg 825710  T
Q  113 aaacccctcaacaaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacagga 190  Q
    ||||| |||||||||||| |||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  825709 aaaccactcaacaaataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga 825632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 15603206 - 15602967
Alignment:
Q  14 ctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgga 113  Q
    |||||||| ||||||| |||   ||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15603206 ctctgatagcactgttgggtgtgagagtaagaaaatattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtgga 15603107  T
Q  114 aacccctcaacaaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagag 213  Q
    ||||||||||||||| |||||       ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | || |||| |    
T  15603106 aacccctcaacaaat-aaggggaaaaaaccacggggcaagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtg 15603008  T
Q  214 tacaattaccactctctcttataaataggagaatacaaact 254  Q
    ||||||||||| ||| |||| ||||||||||||||| ||||    
T  15603007 tacaattaccattctatcttgtaaataggagaatactaact 15602967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 26 - 190
Target Start/End: Complemental strand, 830452 - 830288
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  830452 tgttaggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 830353  T
Q  126 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacagga 190  Q
    ||||| |||       ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  830352 aataaggggaaaaaaaccacggggcaagagtggagaactttcactaagtggaagaaattacagga 830288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 33 - 249
Target Start/End: Complemental strand, 28716070 - 28715857
Alignment:
Q  33 taccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaag 132  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||  |||||| |    
T  28716070 taccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaatattt-acgtggaaacccctcattaaataagg 28715972  T
Q  133 ggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctct 232  Q
    ||       ||||  |  |||| |||||||||||||| ||||||||||||||||||||| ||||||||| | |||||||||||||||||||||  | ||     
T  28715971 ggaaaaa--ccacaagagaagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcc 28715874  T
Q  233 tataaataggagaatac 249  Q
    |||||||||||||||||    
T  28715873 tataaataggagaatac 28715857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 35 - 213
Target Start/End: Original strand, 30396920 - 30397096
Alignment:
Q  35 ccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaaggg 134  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||| |||||    
T  30396920 ccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaacaaat-aaggg 30397016  T
Q  135 nnnnnnnccacggggcaagagtagagaac-tttcactaagtggaagaaattacaggacctctctctaactacaaggagag 213  Q
            ||| |||| |||||||||||| |||||||||||||||||||||||| ||||||| ||||  |||||||||||    
T  30397017 aaaaaaatcacagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagag 30397096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 130
Target Start/End: Original strand, 31592910 - 31593014
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    |||| |||| || ||||||| ||||||||||| ||  || ||||||||||||||||||||||||  |||| |||||| |||||||||||| | ||||| |    
T  31592910 tgttgggtatcaaagtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaata 31593009  T
Q  126 aataa 130  Q
    |||||    
T  31593010 aataa 31593014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 249
Target Start/End: Complemental strand, 8004259 - 8004167
Alignment:
Q  156 tagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatac 249  Q
    |||| |||||||||| | |||||||||||| |  |||||||| ||| |  ||| ||||||||||||| ||||||||||||||||||||||||||    
T  8004259 tagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaattac-actctctcttataaataggagaatac 8004167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 13843921 - 13844014
Alignment:
Q  154 agtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaat 247  Q
    |||| |||| ||||| ||||||||||||||||||||||| || | ||| |||||| ||| || |||||||||||| | ||| ||||||||||||    
T  13843921 agtatagaattttcattaagtggaagaaattacaggacccctttataaatacaagaagaataaaattaccactctattttaaaaataggagaat 13844014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 12175768 - 12175828
Alignment:
Q  46 aaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatatttt 106  Q
    ||||||||||||||||||||||||| ||| || |||| || || |||||||||||||||||    
T  12175768 aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt 12175828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 249
Target Start/End: Original strand, 13840240 - 13840456
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    |||| ||||||||| |||||||||||||||||| || || ||||| ||| |||||| ||||||| |||||||  |||||| || ||  ||  ||||||||    
T  13840240 tgttgggtaccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca--atattt-acatgagaattcctcaaca 13840336  T
Q  126 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 225  Q
    || || |||        || || ||||||||||| || ||| || ||||  || ||||||||  |||||||||||| || ||||||||||||||||| |     
T  13840337 aacaagggggaaaa---catggagcaagagtagaaaatttttaccaagtaaaa-aaattacaaaacctctctctaaatataaggagagtacaattacaat 13840432  T
Q  226 tctctcttataaataggagaatac 249  Q
    ||||||||| |||||  |||||||    
T  13840433 tctctcttaaaaataaaagaatac 13840456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 31 - 249
Target Start/End: Original strand, 16183636 - 16183852
Alignment:
Q  31 ggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 130  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  16183636 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat-a 16183734  T
Q  131 agggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagagtacaattaccactctc 229  Q
    ||||       ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||   ||||||| |||||    
T  16183735 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctc 16183833  T
Q  230 tcttataaataggagaatac 249  Q
    ||||  ||||||||||||||    
T  16183834 tctt-gaaataggagaatac 16183852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 26 - 253
Target Start/End: Complemental strand, 30235339 - 30235112
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    |||| |||||||||||| ||||||||||| || || ||||||||| | | |||||||||||||||||||||||||||||| ||||||||||||||||||     
T  30235339 tgttgggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaacg 30235241  T
Q  126 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctc-taactacaaggagagtacaattacca 224  Q
    ||||| |||       |||||||  ||||||||| |||||||| ||| | ||||||||||||||||||||||| ||  || |||||||||||||||||||    
T  30235240 aataaggggaaaaaaaccacgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattacca 30235141  T
Q  225 ctctctcttataaataggagaatacaaac 253  Q
    |||||||||||||||||||||||||||||    
T  30235140 ctctctcttataaataggagaatacaaac 30235112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 8139951 - 8140183
Alignment:
Q  13 gctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgg 112  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||| || ||||||||||||| |||||||||| |||||||| ||||||| |||| ||||    
T  8139951 gctctaataccactgttgggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaata-tttatgtgg 8140049  T
Q  113 aaacccctcaacaaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggaga 212  Q
    |||||||||||||||| |||||       ||| |||| |||| |||| |||||||||| |||||||||||||| | ||||||||||| | ||||||||||    
T  8140050 aaacccctcaacaaat-aaggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataagacctctctcttaatacaaggaga 8140148  T
Q  213 gtacaattaccactctctcttataaataggagaatac 249  Q
    |   ||||||| |||||||||  ||||||||||||||    
T  8140149 gacaaattacc-ctctctctt-gaaataggagaatac 8140183  T

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Target: chr7; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 8138447 - 8138645
Alignment:
Q  13 gctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgg 112  Q
    ||||| ||||||||||| |||| ||||||| |||| |||||||||||| |||||||||||||||||||||||  |||| |||||||| ||  ||| ||||    
T  8138447 gctctaataccactgttgggtagcagagtatcaaagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagta-attatgtgg 8138545  T
Q  113 aaacccctcaacaaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggaga 212  Q
    |||||||| ||||||  |||||       ||||| ||||||| ||||||||||||||||| |||||||||||||| |||||| |||||| ||||||||||    
T  8138546 aaaccccttaacaaa-caaggggagaaaaccacgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggaga 8138644  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 130
Target Start/End: Original strand, 36528415 - 36528518
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    |||| |||| |||||||||||| ||  || ||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| ||     
T  36528415 tgttgggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacg 36528513  T
Q  126 aataa 130  Q
    |||||    
T  36528514 aataa 36528518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 185
Target Start/End: Original strand, 5102606 - 5102749
Alignment:
Q  39 agtaacaaaatattatcacgcaactaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnn 137  Q
    ||||||||||||||||||| |||||||||||| ||| ||| |||||||| ||| || ||| |||| ||||| | |||| |||||||||||||| |||       
T  5102606 agtaacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataata-tttacat-gaaaaccctcaacaaataagggg--a 5102701  T
Q  138 nnnnccacggggcaagagtagagaactttcactaagtggaagaaatta 185  Q
        ||| || ||||||||||| |||||| ||||||||| ||||||||    
T  5102702 aaaaccatggagcaagagtagataacttttactaagtgggagaaatta 5102749  T

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Target: scaffold0074 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 26 - 213
Target Start/End: Original strand, 27226 - 27413
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  27226 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaaca 27325  T
Q  126 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagag 213  Q
    ||| |||||       ||||||||||||||||||||||||||||||||||||||| |||||||  || ||||||||| |||||||||||    
T  27326 aat-aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagag 27413  T

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Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 26 - 213
Target Start/End: Complemental strand, 4130401 - 4130215
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| |||||||||    
T  4130401 tgttaggtacttgagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaa-aatttacgtggaaatccctcaaca 4130303  T
Q  126 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagag 213  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| |||||||||||    
T  4130302 aataaaggg-aaaaaaccacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagag 4130215  T

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Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 26 - 249
Target Start/End: Complemental strand, 46191546 - 46191327
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  46191546 tgttaggaaccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaa--cacaatattttacgtggaaacccctcaaca 46191449  T
Q  126 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagagtacaattacca 224  Q
    ||| |||||       ||||||| ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| || ||||||||   |||||||     
T  46191448 aat-aaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattacc- 46191351  T
Q  225 ctctctcttataaataggagaatac 249  Q
    |||||||||  ||||||||||||||    
T  46191350 ctctctctt-gaaataggagaatac 46191327  T

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Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 31 - 213
Target Start/End: Original strand, 30697120 - 30697300
Alignment:
Q  31 ggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 130  Q
    ||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| |    
T  30697120 ggtactagagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaata-tttacgtggaaacccctcaacaaat-a 30697217  T
Q  131 agggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagag 213  Q
    ||||       ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  30697218 aggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag 30697300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 364786 - 364683
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    |||| ||||| ||||||| |||||| |||||  ||| |||||||| ||| ||||||| |||||  || ||||||||| ||||||| ||| ||||| |||     
T  364786 tgtttggtacgagagtaataaaataatatcatacaattaaaataatagatgagaaaaaaggaatcgaccacacaata-tttacgttgaatccccttaacc 364688  T
Q  126 aataa 130  Q
    |||||    
T  364687 aataa 364683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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