View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7116_low_29 (Length: 259)

Name: NF7116_low_29
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7116_low_29
NF7116_low_29
[»] chr2 (21 HSPs)
chr2 (60-253)||(44551545-44551742)
chr2 (1-52)||(1102503-1102554)
chr2 (1-52)||(34224380-34224431)
chr2 (1-52)||(3518908-3518959)
chr2 (1-52)||(12969965-12970016)
chr2 (1-51)||(23366790-23366840)
chr2 (1-52)||(37673963-37674014)
chr2 (1-52)||(39938170-39938221)
chr2 (14-52)||(1646526-1646564)
chr2 (14-52)||(22388138-22388176)
chr2 (14-52)||(23367028-23367066)
chr2 (11-52)||(34222058-34222099)
chr2 (24-52)||(2183191-2183219)
chr2 (24-52)||(5405230-5405258)
chr2 (24-52)||(7608283-7608311)
chr2 (24-52)||(8042256-8042284)
chr2 (24-52)||(11841593-11841621)
chr2 (24-52)||(19141066-19141094)
chr2 (24-52)||(19141300-19141328)
chr2 (24-52)||(39358146-39358174)
chr2 (24-52)||(44365391-44365419)
[»] scaffold0257 (2 HSPs)
scaffold0257 (1-52)||(23467-23518)
scaffold0257 (11-52)||(23872-23913)
[»] chr8 (36 HSPs)
chr8 (1-52)||(8697900-8697951)
chr8 (1-52)||(27034997-27035048)
chr8 (1-52)||(41307963-41308014)
chr8 (1-52)||(45278703-45278754)
chr8 (1-52)||(3585451-3585502)
chr8 (1-52)||(10646592-10646643)
chr8 (1-52)||(40486455-40486506)
chr8 (1-52)||(40918955-40919006)
chr8 (1-52)||(43275623-43275674)
chr8 (1-52)||(2540157-2540208)
chr8 (1-52)||(7146913-7146964)
chr8 (1-52)||(11174449-11174500)
chr8 (1-52)||(11646551-11646602)
chr8 (1-52)||(40058529-40058580)
chr8 (11-52)||(41305762-41305803)
chr8 (8-52)||(37345571-37345615)
chr8 (1-52)||(36068080-36068131)
chr8 (11-52)||(45278013-45278053)
chr8 (1-45)||(30999747-30999791)
chr8 (14-52)||(7147152-7147190)
chr8 (14-52)||(11646325-11646363)
chr8 (14-52)||(30999524-30999562)
chr8 (14-52)||(36068319-36068357)
chr8 (14-52)||(40058303-40058341)
chr8 (14-52)||(40918731-40918769)
chr8 (14-52)||(43275399-43275437)
chr8 (24-52)||(132017-132045)
chr8 (24-52)||(616783-616811)
chr8 (24-52)||(617017-617045)
chr8 (24-52)||(623176-623204)
chr8 (24-52)||(623410-623438)
chr8 (20-52)||(5878317-5878349)
chr8 (24-52)||(14237514-14237542)
chr8 (8-52)||(20546520-20546564)
chr8 (24-52)||(40494618-40494646)
chr8 (24-52)||(42587482-42587510)
[»] chr7 (27 HSPs)
chr7 (1-52)||(25060135-25060186)
chr7 (1-52)||(2911550-2911601)
chr7 (1-52)||(10981508-10981559)
chr7 (1-52)||(27813811-27813862)
chr7 (1-50)||(36453350-36453399)
chr7 (1-52)||(25614577-25614628)
chr7 (1-52)||(40348960-40349011)
chr7 (1-52)||(47110451-47110502)
chr7 (11-46)||(25059456-25059491)
chr7 (11-52)||(2910859-2910900)
chr7 (14-52)||(27814050-27814088)
chr7 (14-52)||(40349200-40349238)
chr7 (24-52)||(16778505-16778533)
chr7 (24-52)||(20885103-20885131)
chr7 (24-52)||(25566548-25566576)
chr7 (24-52)||(28061515-28061543)
chr7 (24-52)||(28061749-28061777)
chr7 (24-52)||(36623308-36623336)
chr7 (24-52)||(36623542-36623570)
chr7 (24-52)||(38852081-38852109)
chr7 (24-52)||(41897988-41898016)
chr7 (24-52)||(41898222-41898250)
chr7 (24-52)||(42877386-42877414)
chr7 (24-52)||(46103370-46103398)
chr7 (24-52)||(46103597-46103625)
chr7 (24-52)||(47156027-47156055)
chr7 (24-52)||(47156261-47156289)
[»] chr6 (29 HSPs)
chr6 (1-52)||(15064920-15064971)
chr6 (1-52)||(1605579-1605630)
chr6 (1-52)||(7761301-7761352)
chr6 (1-52)||(17942443-17942494)
chr6 (1-52)||(19996717-19996768)
chr6 (1-52)||(29260192-29260243)
chr6 (11-52)||(19996322-19996363)
chr6 (1-52)||(4129435-4129486)
chr6 (1-52)||(8626482-8626533)
chr6 (1-45)||(30734709-30734753)
chr6 (1-52)||(13757208-13757259)
chr6 (3-46)||(30734836-30734879)
chr6 (14-52)||(1605817-1605855)
chr6 (14-52)||(7761539-7761577)
chr6 (14-52)||(8626721-8626759)
chr6 (14-52)||(29260431-29260469)
chr6 (24-52)||(4147931-4147959)
chr6 (24-52)||(18668688-18668716)
chr6 (24-52)||(18668922-18668950)
chr6 (24-52)||(19087958-19087986)
chr6 (24-52)||(19088192-19088220)
chr6 (24-52)||(20437017-20437045)
chr6 (24-52)||(22055006-22055034)
chr6 (24-52)||(24623941-24623969)
chr6 (24-52)||(25476042-25476070)
chr6 (1-37)||(31559962-31559998)
chr6 (24-52)||(32414913-32414941)
chr6 (24-52)||(32420754-32420782)
chr6 (24-52)||(32671816-32671844)
[»] chr4 (39 HSPs)
chr4 (1-52)||(40122711-40122762)
chr4 (1-52)||(12071561-12071612)
chr4 (1-52)||(14261044-14261095)
chr4 (1-52)||(21310425-21310476)
chr4 (1-52)||(21661761-21661812)
chr4 (1-52)||(21670525-21670576)
chr4 (1-52)||(25704651-25704702)
chr4 (1-52)||(34324809-34324860)
chr4 (1-52)||(22321493-22321544)
chr4 (1-52)||(24706473-24706524)
chr4 (1-50)||(31892240-31892289)
chr4 (1-52)||(44568837-44568888)
chr4 (11-45)||(19362189-19362223)
chr4 (1-37)||(19361662-19361698)
chr4 (1-52)||(20249238-20249289)
chr4 (14-52)||(12071799-12071837)
chr4 (14-52)||(14261283-14261321)
chr4 (14-52)||(21310660-21310698)
chr4 (14-52)||(24706247-24706285)
chr4 (14-52)||(25704890-25704928)
chr4 (14-52)||(44569076-44569114)
chr4 (8-45)||(50767871-50767908)
chr4 (24-52)||(2760730-2760758)
chr4 (24-52)||(2760961-2760989)
chr4 (24-52)||(4467520-4467548)
chr4 (24-52)||(19433358-19433386)
chr4 (14-50)||(21661537-21661573)
chr4 (14-50)||(21670301-21670337)
chr4 (24-52)||(26169986-26170014)
chr4 (24-52)||(26170221-26170249)
chr4 (24-52)||(29830343-29830371)
chr4 (24-52)||(35381128-35381156)
chr4 (24-52)||(38416650-38416678)
chr4 (24-52)||(38416884-38416912)
chr4 (24-52)||(44232077-44232105)
chr4 (24-52)||(45292066-45292094)
chr4 (24-52)||(47386520-47386548)
chr4 (24-52)||(55209574-55209602)
chr4 (24-52)||(55209808-55209836)
[»] chr3 (33 HSPs)
chr3 (1-52)||(12094582-12094633)
chr3 (1-52)||(29375138-29375189)
chr3 (1-52)||(38805245-38805296)
chr3 (1-52)||(19911509-19911560)
chr3 (1-52)||(27707390-27707441)
chr3 (1-52)||(36881282-36881333)
chr3 (1-52)||(44277457-44277508)
chr3 (11-52)||(19912174-19912215)
chr3 (11-52)||(38806341-38806382)
chr3 (8-52)||(198855-198899)
chr3 (1-52)||(3383076-3383127)
chr3 (1-52)||(13364843-13364894)
chr3 (1-52)||(19241894-19241945)
chr3 (1-52)||(43750137-43750188)
chr3 (11-52)||(12095423-12095464)
chr3 (11-52)||(44276775-44276816)
chr3 (1-45)||(32835182-32835226)
chr3 (8-52)||(46694343-46694387)
chr3 (9-52)||(48963156-48963199)
chr3 (14-52)||(13365082-13365120)
chr3 (14-52)||(19241668-19241706)
chr3 (14-52)||(29375371-29375409)
chr3 (14-52)||(36881519-36881557)
chr3 (14-52)||(46694110-46694148)
chr3 (24-52)||(6910568-6910596)
chr3 (24-52)||(13499569-13499597)
chr3 (24-52)||(19823900-19823928)
chr3 (24-52)||(20765430-20765458)
chr3 (24-52)||(27010474-27010502)
chr3 (24-52)||(27010708-27010736)
chr3 (24-52)||(42490430-42490458)
chr3 (24-52)||(42761483-42761511)
chr3 (24-52)||(42761717-42761745)
[»] chr1 (35 HSPs)
chr1 (1-52)||(3943060-3943111)
chr1 (1-52)||(9588670-9588721)
chr1 (1-52)||(284333-284384)
chr1 (1-52)||(13984993-13985044)
chr1 (1-52)||(23045505-23045556)
chr1 (1-52)||(41959078-41959129)
chr1 (1-51)||(27211190-27211240)
chr1 (11-52)||(3943763-3943804)
chr1 (11-52)||(41959809-41959850)
chr1 (1-45)||(46771644-46771688)
chr1 (1-52)||(321626-321677)
chr1 (1-52)||(24772131-24772182)
chr1 (1-52)||(40783883-40783934)
chr1 (11-52)||(9589631-9589672)
chr1 (11-52)||(44227848-44227889)
chr1 (1-52)||(44228230-44228281)
chr1 (10-52)||(47038085-47038127)
chr1 (4-52)||(23526240-23526288)
chr1 (14-52)||(284572-284610)
chr1 (14-52)||(321865-321903)
chr1 (14-52)||(23045279-23045317)
chr1 (14-52)||(24771906-24771944)
chr1 (14-52)||(40783657-40783695)
chr1 (11-52)||(51064992-51065033)
chr1 (8-37)||(52037353-52037382)
chr1 (24-52)||(6402644-6402672)
chr1 (20-52)||(10845481-10845513)
chr1 (24-52)||(11641067-11641095)
chr1 (24-52)||(16120674-16120702)
chr1 (24-52)||(30701718-30701746)
chr1 (24-52)||(36399332-36399360)
chr1 (24-52)||(36757486-36757514)
chr1 (24-52)||(40771772-40771800)
chr1 (24-52)||(40772006-40772034)
chr1 (24-52)||(52024260-52024288)
[»] chr5 (21 HSPs)
chr5 (3-52)||(15305216-15305265)
chr5 (1-52)||(12807079-12807130)
chr5 (1-52)||(16983258-16983309)
chr5 (1-52)||(25773649-25773700)
chr5 (1-52)||(30720718-30720769)
chr5 (4-52)||(36561328-36561376)
chr5 (1-52)||(37900850-37900901)
chr5 (11-52)||(15304822-15304863)
chr5 (1-52)||(10285283-10285334)
chr5 (1-52)||(40886836-40886887)
chr5 (14-52)||(12806853-12806891)
chr5 (14-52)||(30720492-30720530)
chr5 (14-52)||(36561099-36561137)
chr5 (14-52)||(40886610-40886648)
chr5 (24-52)||(978077-978105)
chr5 (24-52)||(978311-978339)
chr5 (1-41)||(7277648-7277688)
chr5 (24-52)||(8086264-8086292)
chr5 (24-52)||(9502627-9502655)
chr5 (24-52)||(14634157-14634185)
chr5 (24-52)||(33387453-33387481)
[»] scaffold1770 (1 HSPs)
scaffold1770 (1-52)||(170-221)
[»] scaffold1431 (1 HSPs)
scaffold1431 (1-52)||(125-176)
[»] scaffold0054 (2 HSPs)
scaffold0054 (8-52)||(45454-45498)
scaffold0054 (14-52)||(45692-45730)
[»] scaffold0022 (1 HSPs)
scaffold0022 (24-52)||(100647-100675)


Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 60 - 253
Target Start/End: Complemental strand, 44551742 - 44551545
Alignment:
Q  60 accaaataatcaatcataaaagttgagtgttgaagtcctaaatgttgaggtgggggagctgcacccatattaatgtttttatggcaaaatttagatagag 159  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44551742 accaaataattaatcataaaagttgagtgttgaagtcctaaatgttgaggtgggagagctgcacccatattaatgtttttatggcaaaatttagatagag 44551643  T
Q  160 a---tataattttatgacatattttgtgttaccatcatttttctagcaactaata-nnnnnnngaacaagtcaaaaaattattggtgattcatctcac 253  Q
    |   |||||||||||||||||||||||||||||||||||||| ||||||||||||        |||||||||||||||||||||||||||||||||||    
T  44551642 atattataattttatgacatattttgtgttaccatcatttttttagcaactaatattttttttgaacaagtcaaaaaattattggtgattcatctcac 44551545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 1102554 - 1102503
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1102554 tggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 1102503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34224380 - 34224431
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34224380 tggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 34224431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3518959 - 3518908
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  3518959 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 3518908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 12969965 - 12970016
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  12969965 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 12970016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23366840 - 23366790
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagt 51  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  23366840 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagt 23366790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37673963 - 37674014
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||| ||||||||||||||||||||||||||    
T  37673963 tggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 37674014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 39938221 - 39938170
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| ||||||| |||||||||||||||||||||||||    
T  39938221 tggttagtgcaatttctccaaaatggtcatgtattttgaaacggagggagta 39938170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 1646526 - 1646564
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  1646526 ttctctaaaatggacaggtattatgaaacggagggagta 1646564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 22388176 - 22388138
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  22388176 ttctctaaaatggacaagtattatgaaacggagggagta 22388138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 23367028 - 23367066
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  23367028 ttctctaaaatggacaagtattatgaaacggagggagta 23367066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 34222099 - 34222058
Alignment:
Q  11 aatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||    
T  34222099 aatttctataaaatggacatgtattttaaaacggaaggagta 34222058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 2183191 - 2183219
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  2183191 tggacatgtattttgaaacggagggagta 2183219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 5405230 - 5405258
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  5405230 tggacatgtattttgaaacggagggagta 5405258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 7608283 - 7608311
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  7608283 tggacatgtattttgaaacggagggagta 7608311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 8042256 - 8042284
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  8042256 tggacatgtattttgaaacggagggagta 8042284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 11841621 - 11841593
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  11841621 tggacatgtattttgaaacggagggagta 11841593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 19141094 - 19141066
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  19141094 tggacatgtattttgaaacggagggagta 19141066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 19141300 - 19141328
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  19141300 tggacatgtattttgaaacggagggagta 19141328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 39358174 - 39358146
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  39358174 tggacatgtattttgaaacggagggagta 39358146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 44365391 - 44365419
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  44365391 tggacatgtattttgaaacggagggagta 44365419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 23518 - 23467
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23518 tggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 23467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 23872 - 23913
Alignment:
Q  11 aatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  23872 aatttctctaaaatggacatgtattttgaaacggatggagta 23913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 8697900 - 8697951
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8697900 tggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 8697951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 27035048 - 27034997
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27035048 tggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 27034997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 41307963 - 41308014
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41307963 tggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 41308014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 45278703 - 45278754
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45278703 tggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 45278754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3585502 - 3585451
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  3585502 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 3585451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10646643 - 10646592
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  10646643 tggttactgcaatttctccaaaatggacatgtattttgaaacggaggaagta 10646592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40486455 - 40486506
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  40486455 tggttactgcaatttcttcaaaatggacatgtattttgaaacggagggagta 40486506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40918955 - 40919006
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  40918955 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 40919006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 43275623 - 43275674
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  43275623 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 43275674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2540157 - 2540208
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||| ||||    
T  2540157 tggttagtgcaatttctccaaaatggacatgtattttgaaacggaggaagta 2540208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7146964 - 7146913
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  7146964 tggttactgcaatttcttcaaaatggacatgtattttgaaacggaaggagta 7146913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 11174449 - 11174500
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||| ||||||||||||||||||||||||||    
T  11174449 tggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 11174500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 11646551 - 11646602
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||| ||||||||    
T  11646551 tggttagtgcaatttctccaaaatggacatgtattttgaaacgaagggagta 11646602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40058529 - 40058580
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| |||||||||||  ||||||||||||||||||||||||||||||||    
T  40058529 tggttagtgcaatttctccgaaatggacatgtattttgaaacggagggagta 40058580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 41305803 - 41305762
Alignment:
Q  11 aatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  41305803 aatttctctaaaatggacatgtattttgaaacggagagagta 41305762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 37345615 - 37345571
Alignment:
Q  8 tgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  37345615 tgcaatttcttcaaaatggacatgtattttgaaacggagggagta 37345571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 36068131 - 36068080
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| | ||||| ||| |||||||||||||||||||||||||||||||||    
T  36068131 tggttagtacaattcctccaaaatggacatgtattttgaaacggagggagta 36068080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 45278053 - 45278013
Alignment:
Q  11 aatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  45278053 aatttctctaaaatggacatgtattttgaaac-gagggagta 45278013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30999747 - 30999791
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacgga 45  Q
    |||||| ||||||||||| ||||| ||||||||||||||||||||    
T  30999747 tggttagtgcaatttctccaaaattgacatgtattttgaaacgga 30999791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 7147152 - 7147190
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  7147152 ttctctaaaatggacaagtattatgaaacggagggagta 7147190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 11646363 - 11646325
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  11646363 ttctctaaaatggacaagtattatgaaacggagggagta 11646325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 30999562 - 30999524
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  30999562 ttctctaaaatggacaagtattatgaaacggagggagta 30999524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 36068319 - 36068357
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  36068319 ttctctaaaatggacaagtattatgaaacggagggagta 36068357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 40058341 - 40058303
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  40058341 ttctctaaaatggacaagtattatgaaacggagggagta 40058303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 40918769 - 40918731
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  40918769 ttctctaaaatggacaagtattatgaaacggagggagta 40918731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 43275437 - 43275399
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  43275437 ttctctaaaatggacaagtattatgaaacggagggagta 43275399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 132045 - 132017
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  132045 tggacatgtattttgaaacggagggagta 132017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 616811 - 616783
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  616811 tggacatgtattttgaaacggagggagta 616783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 617017 - 617045
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  617017 tggacatgtattttgaaacggagggagta 617045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 623204 - 623176
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  623204 tggacatgtattttgaaacggagggagta 623176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 623410 - 623438
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  623410 tggacatgtattttgaaacggagggagta 623438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 5878349 - 5878317
Alignment:
Q  20 aaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||||||||||||| |||||||||||||||    
T  5878349 aaaatggacatgtatttggaaacggagggagta 5878317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 14237514 - 14237542
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  14237514 tggacatgtattttgaaacggagggagta 14237542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 20546520 - 20546564
Alignment:
Q  8 tgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||||||  ||||||||||| |||||||||| ||||||||||    
T  20546520 tgcaatttcttcaaaatggacatatattttgaaatggagggagta 20546564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 40494618 - 40494646
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  40494618 tggacatgtattttgaaacggagggagta 40494646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 42587482 - 42587510
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  42587482 tggacatgtattttgaaacggagggagta 42587510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 25060135 - 25060186
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25060135 tggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 25060186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2911550 - 2911601
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  2911550 tggttactgcaatttctccaaaatggacatgtattttgaaatggagggagta 2911601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10981559 - 10981508
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  10981559 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 10981508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 27813862 - 27813811
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  27813862 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 27813811  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 36453350 - 36453399
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggag 50  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  36453350 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggag 36453399  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 25614577 - 25614628
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| ||||||    
T  25614577 tggttagtgcaatttctccaaaatggacatgtattttgaaacggaaggagta 25614628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40349011 - 40348960
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| ||||||    
T  40349011 tggttagtgcaatttctccaaaatggacatgtattttgaaacggaaggagta 40348960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 47110502 - 47110451
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||| ||||||||||    
T  47110502 tggttagtgcaatttctccaaaatggacatgtattttgaaatggagggagta 47110451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 25059491 - 25059456
Alignment:
Q  11 aatttctctaaaatggacatgtattttgaaacggag 46  Q
    ||||||||||||||||||||||||||||||||||||    
T  25059491 aatttctctaaaatggacatgtattttgaaacggag 25059456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 2910900 - 2910859
Alignment:
Q  11 aatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||| |||||| |||||||||||||||||||||||||||    
T  2910900 aatttctttaaaatagacatgtattttgaaacggagggagta 2910859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 27814050 - 27814088
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  27814050 ttctctaaaatggacaagtattatgaaacggagggagta 27814088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 40349200 - 40349238
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  40349200 ttctctaaaatggacaagtattatgaaacggagggagta 40349238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 16778533 - 16778505
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  16778533 tggacatgtattttgaaacggagggagta 16778505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 20885131 - 20885103
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  20885131 tggacatgtattttgaaacggagggagta 20885103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 25566576 - 25566548
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  25566576 tggacatgtattttgaaacggagggagta 25566548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 28061543 - 28061515
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  28061543 tggacatgtattttgaaacggagggagta 28061515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 28061749 - 28061777
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  28061749 tggacatgtattttgaaacggagggagta 28061777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 36623336 - 36623308
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  36623336 tggacatgtattttgaaacggagggagta 36623308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 36623542 - 36623570
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  36623542 tggacatgtattttgaaacggagggagta 36623570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 38852081 - 38852109
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  38852081 tggacatgtattttgaaacggagggagta 38852109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 41898016 - 41897988
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  41898016 tggacatgtattttgaaacggagggagta 41897988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 41898222 - 41898250
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  41898222 tggacatgtattttgaaacggagggagta 41898250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 42877414 - 42877386
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  42877414 tggacatgtattttgaaacggagggagta 42877386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 46103398 - 46103370
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  46103398 tggacatgtattttgaaacggagggagta 46103370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 46103597 - 46103625
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  46103597 tggacatgtattttgaaacggagggagta 46103625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 47156055 - 47156027
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  47156055 tggacatgtattttgaaacggagggagta 47156027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 47156261 - 47156289
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  47156261 tggacatgtattttgaaacggagggagta 47156289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 15064920 - 15064971
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15064920 tggttgctgcaatttctctaaaatggacatgtattttgaaacggagggagta 15064971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 1605630 - 1605579
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  1605630 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 1605579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7761352 - 7761301
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  7761352 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 7761301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 17942494 - 17942443
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  17942494 tggttactgcaatttctcaaaaatggacatgtattttgaaacgaagggagta 17942443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19996717 - 19996768
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  19996717 tggttactgcaatttctccaaaatagacatgtattttgaaacggagggagta 19996768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 29260243 - 29260192
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  29260243 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 29260192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 19996363 - 19996322
Alignment:
Q  11 aatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19996363 aatttctctaaaatggacatgtattttgaaacggagggagta 19996322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 4129486 - 4129435
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  4129486 tggttactgcaatttctccaaagtggatatgtattttgaaacggagggagta 4129435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 8626533 - 8626482
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||  |||||||||||||||||||||||||||||||||    
T  8626533 tggttaatgcaatttcttcaaaatggacatgtattttgaaacggagggagta 8626482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30734709 - 30734753
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacgga 45  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||    
T  30734709 tggttagtgcaatttctccaaaatggacatgtattttgaaacgga 30734753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13757259 - 13757208
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| || |||||||| ||||||||||||||||||||||||||| |||||    
T  13757259 tggttagtgtaatttctccaaaatggacatgtattttgaaacggagagagta 13757208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 30734836 - 30734879
Alignment:
Q  3 gttactgcaatttctctaaaatggacatgtattttgaaacggag 46  Q
    |||||||||||||||  |||||||||||||||||||||||||||    
T  30734836 gttactgcaatttcttcaaaatggacatgtattttgaaacggag 30734879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 1605817 - 1605855
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  1605817 ttctctaaaatggacaagtattatgaaacggagggagta 1605855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 7761539 - 7761577
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  7761539 ttctctaaaatggacaagtattatgaaacggagggagta 7761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 8626721 - 8626759
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  8626721 ttctctaaaatggacaagtattatgaaacggagggagta 8626759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 29260431 - 29260469
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  29260431 ttctctaaaatggacaagtattatgaaacggagggagta 29260469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 4147959 - 4147931
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  4147959 tggacatgtattttgaaacggagggagta 4147931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 18668716 - 18668688
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  18668716 tggacatgtattttgaaacggagggagta 18668688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 18668922 - 18668950
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  18668922 tggacatgtattttgaaacggagggagta 18668950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 19087986 - 19087958
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  19087986 tggacatgtattttgaaacggagggagta 19087958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 19088192 - 19088220
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  19088192 tggacatgtattttgaaacggagggagta 19088220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 20437045 - 20437017
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  20437045 tggacatgtattttgaaacggagggagta 20437017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 22055006 - 22055034
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  22055006 tggacatgtattttgaaacggagggagta 22055034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 24623969 - 24623941
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  24623969 tggacatgtattttgaaacggagggagta 24623941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 25476042 - 25476070
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  25476042 tggacatgtattttgaaacggagggagta 25476070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31559962 - 31559998
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtatttt 37  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  31559962 tggttaatgcaatttctccaaaatggacatgtatttt 31559998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 32414913 - 32414941
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  32414913 tggacatgtattttgaaacggagggagta 32414941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 32420754 - 32420782
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  32420754 tggacatgtattttgaaacggagggagta 32420782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 32671844 - 32671816
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  32671844 tggacatgtattttgaaacggagggagta 32671816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40122711 - 40122762
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40122711 tggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 40122762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12071612 - 12071561
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  12071612 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 12071561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14261095 - 14261044
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  14261095 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 14261044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 21310476 - 21310425
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  21310476 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 21310425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 21661761 - 21661812
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  21661761 tggttactgcaatttctccaaaatggacatgtattttgaaagggagggagta 21661812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 21670525 - 21670576
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  21670525 tggttactgcaatttctccaaaatggacatgtattttgaaagggagggagta 21670576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25704702 - 25704651
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  25704702 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 25704651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34324809 - 34324860
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  34324809 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 34324860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 22321493 - 22321544
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| ||||||    
T  22321493 tggttagtgcaatttctccaaaatggacatgtattttgaaacggaaggagta 22321544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24706473 - 24706524
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| ||||||    
T  24706473 tggttagtgcaatttctccaaaatggacatgtattttgaaacggatggagta 24706524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 31892289 - 31892240
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggag 50  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  31892289 tggttactgcaatttctttaaaatgaacatgtattttgatacggagggag 31892240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 44568888 - 44568837
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||  |||||||||||||||||||||||||| ||||||    
T  44568888 tggttagtgcaatttcttcaaaatggacatgtattttgaaacggaaggagta 44568837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 19362189 - 19362223
Alignment:
Q  11 aatttctctaaaatggacatgtattttgaaacgga 45  Q
    |||||||||||||||||||||||||||||||||||    
T  19362189 aatttctctaaaatggacatgtattttgaaacgga 19362223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19361698 - 19361662
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtatttt 37  Q
    |||||||||||||||||| ||||||||||||||||||    
T  19361698 tggttactgcaatttctccaaaatggacatgtatttt 19361662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 20249238 - 20249289
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| | |||||| || ||||||||||||||||||||||||||| |||||    
T  20249238 tggttaatacaatttatccaaaatggacatgtattttgaaacggagagagta 20249289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 12071799 - 12071837
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  12071799 ttctctaaaatggacaagtattatgaaacggagggagta 12071837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 14261283 - 14261321
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  14261283 ttctctaaaatggacaagtattatgaaacggagggagta 14261321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 21310660 - 21310698
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  21310660 ttctctaaaatggacaagtattatgaaacggagggagta 21310698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 24706285 - 24706247
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  24706285 ttctctaaaatggacaagtattatgaaacggagggagta 24706247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 25704890 - 25704928
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  25704890 ttctctaaaatggacaagtattatgaaacggagggagta 25704928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 44569076 - 44569114
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  44569076 ttctctaaaatggacaagtattatgaaacggagggagta 44569114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 50767908 - 50767871
Alignment:
Q  8 tgcaatttctctaaaatggacatgtattttgaaacgga 45  Q
    |||||||||||||||||| | |||||||||||||||||    
T  50767908 tgcaatttctctaaaatgaatatgtattttgaaacgga 50767871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 2760758 - 2760730
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  2760758 tggacatgtattttgaaacggagggagta 2760730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 2760961 - 2760989
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  2760961 tggacatgtattttgaaacggagggagta 2760989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 4467548 - 4467520
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  4467548 tggacatgtattttgaaacggagggagta 4467520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 19433386 - 19433358
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  19433386 tggacatgtattttgaaacggagggagta 19433358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 21661573 - 21661537
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggag 50  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  21661573 ttctctaaaatggacaagtattatgaaacggagggag 21661537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 21670337 - 21670301
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggag 50  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  21670337 ttctctaaaatggacaagtattatgaaacggagggag 21670301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 26170014 - 26169986
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  26170014 tggacatgtattttgaaacggagggagta 26169986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 26170221 - 26170249
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  26170221 tggacatgtattttgaaacggagggagta 26170249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 29830371 - 29830343
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  29830371 tggacatgtattttgaaacggagggagta 29830343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 35381128 - 35381156
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  35381128 tggacatgtattttgaaacggagggagta 35381156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 38416678 - 38416650
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  38416678 tggacatgtattttgaaacggagggagta 38416650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 38416884 - 38416912
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  38416884 tggacatgtattttgaaacggagggagta 38416912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 44232105 - 44232077
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  44232105 tggacatgtattttgaaacggagggagta 44232077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 45292066 - 45292094
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  45292066 tggacatgtattttgaaacggagggagta 45292094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 47386520 - 47386548
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  47386520 tggacatgtattttgaaacggagggagta 47386548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 55209602 - 55209574
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  55209602 tggacatgtattttgaaacggagggagta 55209574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 55209808 - 55209836
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  55209808 tggacatgtattttgaaacggagggagta 55209836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12094633 - 12094582
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12094633 tggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 12094582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 29375189 - 29375138
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29375189 tggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 29375138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 38805296 - 38805245
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38805296 tggttactgcaatttctctaaaatggacatgtattttaaaacggagggagta 38805245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 19911560 - 19911509
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  19911560 tggttactgcaatttctccaaaatgaacatgtattttgaaacggagggagta 19911509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 27707390 - 27707441
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  27707390 tggttactgcaatttctccaaaatggacatgtatttcgaaacggagggagta 27707441  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 36881333 - 36881282
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  36881333 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 36881282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 44277457 - 44277508
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  44277457 tggttactgcaatttctccaaaatagacatgtattttgaaacggagggagta 44277508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 19912174 - 19912215
Alignment:
Q  11 aatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19912174 aatttctctaaaatggacatgtattttgaaacggagggagta 19912215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 38806341 - 38806382
Alignment:
Q  11 aatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38806341 aatttctctaaaatggacatgtattttgaaacggagggagta 38806382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 198899 - 198855
Alignment:
Q  8 tgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  198899 tgcaatttctccaaaatggacatgtattttgaaacggagggagta 198855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3383127 - 3383076
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| ||||||||||| |||||||||||||| ||||||    
T  3383127 tggttactgcaatttctccaaaatggacatatattttgaaacggaaggagta 3383076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13364894 - 13364843
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||| ||||||||||||||||||||||||||    
T  13364894 tggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 13364843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19241894 - 19241945
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||||||||    
T  19241894 tggttagtgcaatttcaccaaaatggacatgtattttgaaacggagggagta 19241945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 43750188 - 43750137
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||| ||||||||| |||||||||||||||||||||||| ||||||||    
T  43750188 tggttactccaatttctccaaaatggacatgtattttgaaacgaagggagta 43750137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 12095423 - 12095464
Alignment:
Q  11 aatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  12095423 aatttctctaaaatggacatatattttgaaacggagggagta 12095464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 44276816 - 44276775
Alignment:
Q  11 aatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  44276816 aatttctctaaaatggacatgtattttgaaacggagagagta 44276775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32835182 - 32835226
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacgga 45  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||    
T  32835182 tggttattgcaatttctccaaaatggacatgtattttgaaacgga 32835226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 46694343 - 46694387
Alignment:
Q  8 tgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||    
T  46694343 tgcaatttctccaaaaaggacatgtattttgaaacggagggagta 46694387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 48963199 - 48963156
Alignment:
Q  9 gcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||| ||||| || ||||||||||||||||||||||||    
T  48963199 gcaatttctccaaaatagatatgtattttgaaacggagggagta 48963156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 13365082 - 13365120
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  13365082 ttctctaaaatggacaagtattatgaaacggagggagta 13365120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 19241706 - 19241668
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  19241706 ttctctaaaatggacaagtattatgaaacggagggagta 19241668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 29375371 - 29375409
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  29375371 ttctctaaaatggacaagtattatgaaacggagggagta 29375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 36881519 - 36881557
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  36881519 ttctctaaaatggacaagtattatgaaacggagggagta 36881557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 46694148 - 46694110
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  46694148 ttctctaaaatggacaagtattatgaaacggagggagta 46694110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 6910568 - 6910596
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  6910568 tggacatgtattttgaaacggagggagta 6910596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 13499569 - 13499597
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  13499569 tggacatgtattttgaaacggagggagta 13499597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 19823928 - 19823900
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  19823928 tggacatgtattttgaaacggagggagta 19823900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 20765430 - 20765458
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  20765430 tggacatgtattttgaaacggagggagta 20765458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 27010502 - 27010474
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  27010502 tggacatgtattttgaaacggagggagta 27010474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 27010708 - 27010736
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  27010708 tggacatgtattttgaaacggagggagta 27010736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 42490430 - 42490458
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  42490430 tggacatgtattttgaaacggagggagta 42490458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 42761511 - 42761483
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  42761511 tggacatgtattttgaaacggagggagta 42761483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 42761717 - 42761745
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  42761717 tggacatgtattttgaaacggagggagta 42761745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3943111 - 3943060
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3943111 tggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 3943060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 9588721 - 9588670
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9588721 tggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 9588670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 284384 - 284333
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  284384 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 284333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 13984993 - 13985044
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  13984993 tggttactgcaatttctccaaaatggacatgtattttgaaacggatggagta 13985044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 23045505 - 23045556
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  23045505 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 23045556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 41959129 - 41959078
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  41959129 tggttattgcaatttctccaaaatggacatgtattttgaaacggagggagta 41959078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 27211190 - 27211240
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagt 51  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  27211190 tggttattgcaatttctccaaaatggacatgtattttgaaacggagggagt 27211240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 3943763 - 3943804
Alignment:
Q  11 aatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3943763 aatttctctaaaatggacatgtattttgaaacggagggagta 3943804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 41959809 - 41959850
Alignment:
Q  11 aatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41959809 aatttctctaaaatggacatgtattttgaaacggagggagta 41959850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 46771688 - 46771644
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacgga 45  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  46771688 tggttactgcaatttctccaaaatggacatgtattttgaaacgga 46771644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 321677 - 321626
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||| ||||||||||||||||||||||||||    
T  321677 tggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 321626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24772131 - 24772182
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||  |||||||||||||||||||||||||||||||||    
T  24772131 tggttagtgcaatttcttcaaaatggacatgtattttgaaacggagggagta 24772182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40783883 - 40783934
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||| ||||||||||||||||||||||||||    
T  40783883 tggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 40783934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 9589631 - 9589672
Alignment:
Q  11 aatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  9589631 aatttctctaaaatagacatgtattttgaaacggagggagta 9589672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 44227889 - 44227848
Alignment:
Q  11 aatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  44227889 aatttctccaaaatggacatgtattttgaaacggagggagta 44227848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 44228230 - 44228281
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||| |||||||||| |||||||||||||||||||||| ||||| ||||    
T  44228230 tggttacagcaatttctccaaaatggacatgtattttgaaatggaggtagta 44228281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 47038085 - 47038127
Alignment:
Q  10 caatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  47038085 caatttctccaaaatggacatgtattttgaaacggatggagta 47038127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 23526288 - 23526240
Alignment:
Q  4 ttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||||||||||| |||||| ||||||||||||||| ||| ||||||    
T  23526288 ttactgcaatttctccaaaatgaacatgtattttgaaatggaaggagta 23526240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 284572 - 284610
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  284572 ttctctaaaatggacaagtattatgaaacggagggagta 284610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 321865 - 321903
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  321865 ttctctaaaatggacaagtattatgaaacggagggagta 321903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 23045317 - 23045279
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  23045317 ttctctaaaatggacaagtattatgaaacggagggagta 23045279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 24771944 - 24771906
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  24771944 ttctctaaaatggacaagtattatgaaacggagggagta 24771906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 40783695 - 40783657
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  40783695 ttctctaaaatggacaagtattatgaaacggagggagta 40783657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 51064992 - 51065033
Alignment:
Q  11 aatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||    
T  51064992 aatttctttaaaatggacaagtattgtgaaacggagggagta 51065033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 52037353 - 52037382
Alignment:
Q  8 tgcaatttctctaaaatggacatgtatttt 37  Q
    ||||||||||||||||||||||||||||||    
T  52037353 tgcaatttctctaaaatggacatgtatttt 52037382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 6402644 - 6402672
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  6402644 tggacatgtattttgaaacggagggagta 6402672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 10845513 - 10845481
Alignment:
Q  20 aaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||||||||||||||||||||||| |||||    
T  10845513 aaaatggacatgtattttgaaacggagtgagta 10845481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 11641095 - 11641067
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  11641095 tggacatgtattttgaaacggagggagta 11641067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 16120674 - 16120702
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  16120674 tggacatgtattttgaaacggagggagta 16120702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 30701746 - 30701718
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  30701746 tggacatgtattttgaaacggagggagta 30701718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 36399332 - 36399360
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  36399332 tggacatgtattttgaaacggagggagta 36399360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 36757514 - 36757486
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  36757514 tggacatgtattttgaaacggagggagta 36757486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 40771800 - 40771772
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  40771800 tggacatgtattttgaaacggagggagta 40771772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 40772006 - 40772034
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  40772006 tggacatgtattttgaaacggagggagta 40772034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 52024260 - 52024288
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  52024260 tggacatgtattttgaaacggagggagta 52024288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 15305216 - 15305265
Alignment:
Q  3 gttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15305216 gttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 15305265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 12807079 - 12807130
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  12807079 tggttaatgcaatttctccaaaatggacatgtattttgaaacggagggagta 12807130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16983309 - 16983258
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  16983309 tggttactgcaatttctccaaaatggacatgtattttgaaacagagggagta 16983258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25773700 - 25773649
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  25773700 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 25773649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 30720718 - 30720769
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  30720718 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 30720769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 36561328 - 36561376
Alignment:
Q  4 ttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  36561328 ttactgcaatttttctaaaatggacatgtattttgaaacggatggagta 36561376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37900850 - 37900901
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  37900850 tggttactgcaatttctccaaaatggatgtgtattttgaaacggagggagta 37900901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 15304863 - 15304822
Alignment:
Q  11 aatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  15304863 aatttctctaaaatggacatgtattttaaaacggagggagta 15304822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10285283 - 10285334
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| ||||| ||||| |||||||||||||||||||||    
T  10285283 tggttaatgcaatttctccaaaatagacatctattttgaaacggagggagta 10285334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40886836 - 40886887
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| |||||| ||||||||||||||||||| ||||||    
T  40886836 tggttagtgcaatttctccaaaatgaacatgtattttgaaacggatggagta 40886887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 12806891 - 12806853
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  12806891 ttctctaaaatggacaagtattatgaaacggagggagta 12806853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 30720530 - 30720492
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  30720530 ttctctaaaatggacaagtattatgaaacggagggagta 30720492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 36561137 - 36561099
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  36561137 ttctctaaaatggacaagtattatgaaacggagggagta 36561099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 40886648 - 40886610
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  40886648 ttctctaaaatggacaagtattatgaaacggagggagta 40886610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 978105 - 978077
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  978105 tggacatgtattttgaaacggagggagta 978077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 978311 - 978339
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  978311 tggacatgtattttgaaacggagggagta 978339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 7277648 - 7277688
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaa 41  Q
    |||||||| ||||||||| ||||| ||||||||||||||||    
T  7277648 tggttactccaatttctccaaaatagacatgtattttgaaa 7277688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 8086264 - 8086292
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  8086264 tggacatgtattttgaaacggagggagta 8086292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 9502655 - 9502627
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  9502655 tggacatgtattttgaaacggagggagta 9502627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 14634185 - 14634157
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  14634185 tggacatgtattttgaaacggagggagta 14634157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 33387453 - 33387481
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  33387453 tggacatgtattttgaaacggagggagta 33387481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 221 - 170
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  221 tggttactgcaatttctccaaagtggatatgtattttgaaacggagggagta 170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 125 - 176
Alignment:
Q  1 tggttactgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||| |||||    
T  125 tggttagtgcaatttctccaaaatggacatgtattttgaaacggagagagta 176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 45498 - 45454
Alignment:
Q  8 tgcaatttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||    
T  45498 tgcaatttctccaaaatgaacatgtattttgaaacggagggagta 45454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 45692 - 45730
Alignment:
Q  14 ttctctaaaatggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  45692 ttctctaaaatggacaagtattatgaaacggagggagta 45730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 100675 - 100647
Alignment:
Q  24 tggacatgtattttgaaacggagggagta 52  Q
    |||||||||||||||||||||||||||||    
T  100675 tggacatgtattttgaaacggagggagta 100647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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