View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7116_low_35 (Length: 246)

Name: NF7116_low_35
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7116_low_35
NF7116_low_35
[»] chr1 (2 HSPs)
chr1 (6-227)||(23805410-23805632)
chr1 (181-227)||(32359164-32359210)
[»] chr2 (2 HSPs)
chr2 (13-115)||(10721640-10721743)
chr2 (25-115)||(12524624-12524715)
[»] chr3 (3 HSPs)
chr3 (13-114)||(18417808-18417910)
chr3 (12-106)||(48742193-48742288)
chr3 (149-222)||(43822515-43822588)
[»] chr5 (2 HSPs)
chr5 (12-115)||(43119201-43119304)
chr5 (149-216)||(9004814-9004881)
[»] chr4 (2 HSPs)
chr4 (149-217)||(52831447-52831515)
chr4 (149-225)||(39276339-39276415)
[»] chr8 (1 HSPs)
chr8 (179-217)||(25019672-25019710)
[»] chr7 (2 HSPs)
chr7 (151-217)||(883733-883799)
chr7 (151-217)||(1243062-1243128)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 23805632 - 23805410
Alignment:
Q  6 cgactgaaaagaaatgagcttaacattatctaaaagcttaatagatgagcattctttgttattgaaaattttgctattcctttctttcaaatgatccaag 105  Q
    ||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23805632 cgactaaaaagaaatgagcttagcattatctaaaagcttgatagatgagcattctttgttattgaaaattttgctattcctttcttccaaatgatccaag 23805533  T
Q  106 tgcaagcacaataagaaacacagagat-nnnnnnntataaatgtagctacttgaatcatcttatgaaaaactattataagctcataaaaataagttataa 204  Q
    ||||||||||||||||||||| |||||        ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23805532 tgcaagcacaataagaaacactgagataaaaaaaatataaatatagctacttgaatcatcttctgaaaaactattataagctcataaaaataagttataa 23805433  T
Q  205 tctcgtgtaaaaacgacagttgc 227  Q
    |||||||||||||||||||||||    
T  23805432 tctcgtgtaaaaacgacagttgc 23805410  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 32359210 - 32359164
Alignment:
Q  181 taagctcataaaaataagttataatctcgtgtaaaaacgacagttgc 227  Q
    ||||||||| |||||||| ||||| |||||||||||| |||||||||    
T  32359210 taagctcatgaaaataagctataagctcgtgtaaaaatgacagttgc 32359164  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 10721743 - 10721640
Alignment:
Q  13 aaagaaatgagcttaacattatctaaaagcttaatagatgagcattctttgttattgaaaattttgctattccttt-ctttcaaatgatccaagtgcaag 111  Q
    ||||||| || ||||||||||||||||||||||||||   |||||| |||||||||||||||||| |||||| ||| ||| |||||||||||||||||||    
T  10721743 aaagaaaggaacttaacattatctaaaagcttaatagtcaagcattatttgttattgaaaattttactattcatttccttccaaatgatccaagtgcaag 10721644  T
Q  112 caca 115  Q
    ||||    
T  10721643 caca 10721640  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 12524624 - 12524715
Alignment:
Q  25 ttaacattatctaaaagcttaatagatgagcattctttgttattgaaaattttgctattcctttctttc-aaatgatccaagtgcaagcaca 115  Q
    ||||||||||||||||||||||  | ||||||| ||||| ||||||||||| || ||||| |||| ||| |||| ||||||| |||||||||    
T  12524624 ttaacattatctaaaagcttaagtgttgagcatgctttgatattgaaaattatgttattcatttccttcaaaataatccaagagcaagcaca 12524715  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 18417910 - 18417808
Alignment:
Q  13 aaagaaatgagcttaacattatctaaaagcttaatagatgagcattctttgttattgaaaattttgctattccttt-ctttcaaatgatccaagtgcaag 111  Q
    ||||||||||||| |||||||||||||| ||||||||   | |||| |||||| |||||||||  ||||||||||| ||| ||||||||||||||||| |    
T  18417910 aaagaaatgagctgaacattatctaaaaacttaatagtctaacattatttgttgttgaaaattaagctattcctttccttccaaatgatccaagtgcagg 18417811  T
Q  112 cac 114  Q
    |||    
T  18417810 cac 18417808  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 48742193 - 48742288
Alignment:
Q  12 aaaagaaatgagcttaacattatctaaaagcttaatagatgagcattctttgttattgaaaattttgctattccttt-ctttcaaatgatccaagt 106  Q
    ||||||||  |||||||||||||||||||||||||  || |||  | |||||||||| |||||  || ||||||||| ||||||||| | ||||||    
T  48742193 aaaagaaagcagcttaacattatctaaaagcttaagtgaggagtttgctttgttattaaaaatcatgttattcctttcctttcaaataacccaagt 48742288  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 43822588 - 43822515
Alignment:
Q  149 agctacttgaatcatcttatgaaaaactattataagctcataaaaataagttataatctcgtgtaaaaacgaca 222  Q
    |||||||||||| | ||||| |||||| | ||||| ||||| |||||||| ||||| || ||||||||| ||||    
T  43822588 agctacttgaattagcttatcaaaaaccactataatctcatgaaaataagctataagcttgtgtaaaaatgaca 43822515  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 43119201 - 43119304
Alignment:
Q  12 aaaagaaatgagcttaacattatctaaaagcttaatagatgagcattctttgttattgaaaattttgctattcctttctttc-aaatgatccaagtgcaa 110  Q
    |||| |||||||||||| |||||||||||||||||| |   |||||||||| ||||| ||||||    |||||||||| ||| |||||||||||||||||    
T  43119201 aaaaaaaatgagcttaatattatctaaaagcttaattgtctagcattctttattattaaaaattcat-tattcctttcattccaaatgatccaagtgcaa 43119299  T
Q  111 gcaca 115  Q
    |||||    
T  43119300 gcaca 43119304  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 9004881 - 9004814
Alignment:
Q  149 agctacttgaatcatcttatgaaaaactattataagctcataaaaataagttataatctcgtgtaaaa 216  Q
    |||||||||||| | ||||| ||||||   ||||||||||| |||||||| ||||| |||||||||||    
T  9004881 agctacttgaattagcttatcaaaaaccgatataagctcatgaaaataagctataagctcgtgtaaaa 9004814  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 52831515 - 52831447
Alignment:
Q  149 agctacttgaatcatcttatgaaaaactattataagctcataaaaataagttataatctcgtgtaaaaa 217  Q
    |||||||||||| | ||||| ||||||  |||||||||||| |||||||| || || ||||||||||||    
T  52831515 agctacttgaattagcttatcaaaaacctttataagctcatgaaaataagctacaagctcgtgtaaaaa 52831447  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 39276415 - 39276339
Alignment:
Q  149 agctacttgaatcatcttatgaaaaactattataagctcataaaaataagttataatctcgtgtaaaaacgacagtt 225  Q
    |||||||||||| | ||||| |||||   |||||||||  |||||||||||||||| ||||||  |||| |||||||    
T  39276415 agctacttgaattagcttatcaaaaaacgttataagctagtaaaaataagttataagctcgtgagaaaatgacagtt 39276339  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 25019672 - 25019710
Alignment:
Q  179 tataagctcataaaaataagttataatctcgtgtaaaaa 217  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  25019672 tataagctcataaaaagaagttataatctcgtttaaaaa 25019710  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 883799 - 883733
Alignment:
Q  151 ctacttgaatcatcttatgaaaaactattataagctcataaaaataagttataatctcgtgtaaaaa 217  Q
    |||||||||| | ||||| | |||||  |||| |||||| |||||||||||||| ||||||||||||    
T  883799 ctacttgaattaacttatcagaaacttctatatgctcatgaaaataagttataagctcgtgtaaaaa 883733  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 1243128 - 1243062
Alignment:
Q  151 ctacttgaatcatcttatgaaaaactattataagctcataaaaataagttataatctcgtgtaaaaa 217  Q
    |||||||||| | ||||| | |||||  |||| |||||| |||||||||||||| ||||||||||||    
T  1243128 ctacttgaattaacttatcagaaacttctatatgctcatgaaaataagttataagctcgtgtaaaaa 1243062  T

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