View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7116_low_36 (Length: 239)
Name: NF7116_low_36
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7116_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 6233556 - 6233353
Alignment:
| Q |
21 |
gttattttgttaattacttaatagtttgttccacaaaaggagagcagaaacctcctatattttaccacacatacttatccttaatcatccttcaaaaaat |
120 |
Q |
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| T |
6233556 |
gttattttgttaattacttaatagtttgttccacaaaaggagagcagaaacctcctatatgttaccacacatacttatccttaatcatccttcaaaaaat |
6233457 |
T |
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| Q |
121 |
attatcattaatcttcaatttttctcttataaataagagattcaaaacttgttttattcgcagcatttaatttcctccaaattaacctacgtaacacacc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6233456 |
attatcattaatcttcaatttttctcttataaataagagattcaaaacttgttttattcgcagcatttaatttcctccaaattaacctacgtaacacacc |
6233357 |
T |
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| Q |
221 |
aaac |
224 |
Q |
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|||| |
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| T |
6233356 |
aaac |
6233353 |
T |
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