View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7116_low_4 (Length: 570)

Name: NF7116_low_4
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7116_low_4
NF7116_low_4
[»] chr6 (15 HSPs)
chr6 (11-567)||(11208700-11209256)
chr6 (11-567)||(11169878-11170434)
chr6 (21-555)||(11275272-11275806)
chr6 (270-555)||(11196305-11196575)
chr6 (270-555)||(11160719-11160989)
chr6 (339-555)||(11155921-11156122)
chr6 (339-555)||(11199364-11199565)
chr6 (457-555)||(11315049-11315147)
chr6 (427-555)||(11241739-11241867)
chr6 (349-401)||(11315188-11315240)
chr6 (270-401)||(11241878-11242009)
chr6 (430-500)||(11132721-11132791)
chr6 (287-335)||(11319818-11319866)
chr6 (346-405)||(11132652-11132711)
chr6 (105-153)||(11155693-11155741)
[»] scaffold1207 (1 HSPs)
scaffold1207 (361-555)||(546-740)


Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 11 - 567
Target Start/End: Original strand, 11208700 - 11209256
Alignment:
Q  11 cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacgtggaggaatttcaaactcaaaagatccaag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  11208700 cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacatggaggaatttcaaactcaaaagatcctag 11208799  T
Q  111 caagttgttttccttagttgtttgcctctcaccctcataaacagaaattgataaactattttggttgggttcactggtggtgtatacatgttccatattg 210  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11208800 caagttgttgtccttagttgtttgcctctcaccctcataaacggaaattgataaactattttggttgggttcactggtggtgtatacatcttccatattg 11208899  T
Q  211 gtcggaatcgtggtattcctaggaattattacgctcatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatctt 310  Q
    || ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11208900 gtaggaatcgtggtattcctaggaattattacgctcatgaggccccctttgatattaattccaagggacaaaggattgacttccctcaatgtcaaatctt 11208999  T
Q  311 gaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataactccgtccc 410  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  11209000 gaaacttttcacaaatctcaccacttgctataaaagcatggacagcagcgccatatgcaactgcctcatctgcattgatgcttttacataactccgtccc 11209099  T
Q  411 actgctctttttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttc 510  Q
    ||| |  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  11209100 actaccttttttaattccaaagaaatcaatcaaaagttgttgcacttttacaatcctggtagacccgccaacaagcacaacatcatgaatgttactcttc 11209199  T
Q  511 actatcccactatcttctatacacttttctacactctccatgcaccggccaaaaaga 567  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||    
T  11209200 actatcccactatcttctatacacttttctacaatctccatgcactggtcaaaaaga 11209256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 11 - 567
Target Start/End: Original strand, 11169878 - 11170434
Alignment:
Q  11 cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacgtggaggaatttcaaactcaaaagatccaag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||||||||||||||||||||||||||| ||| ||    
T  11169878 cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag 11169977  T
Q  111 caagttgttttccttagttgtttgcctctcaccctcataaacagaaattgata-aactattttggttgggttcactggtggtgtatacatgttccatatt 209  Q
    ||||||||| ||||||||| |||||||||||||||||||||||  ||| || | |||| ||| |||||  ||||   |||||| ||   | |||| ||||    
T  11169978 caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataact-tttaggttgtcttcagctgtggtgaatgacttttccctatt 11170076  T
Q  210 ggtcggaatcgtggtattcctaggaattattacgctcatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatct 309  Q
    ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11170077 ggtaggaatcgtggtattcctaggaattattacgcccatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatct 11170176  T
Q  310 tgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataactccgtcc 409  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||    
T  11170177 tgaaacttttcacaaatcgcaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctacattgatgtttttacataactccgtcc 11170276  T
Q  410 cactgctctttttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttactttt 509  Q
    |||| | ||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  11170277 cactacccttattaattccaaagaaatcaatcaaacgttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaattttactctt 11170376  T
Q  510 cactatcccactatcttctatacacttttctacactctccatgcaccggccaaaaaga 567  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11170377 cactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaaga 11170434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 21 - 555
Target Start/End: Original strand, 11275272 - 11275806
Alignment:
Q  21 taagatgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacgtggaggaatttcaaactcaaaagatccaagcaagttgttt 120  Q
    |||||||||||||| || |||||||||||||||||| ||||   || || ||  ||||| ||||||||||||||||  ||||| ||| |||||||||||     
T  11275272 taagatgccatcattgtcaatttggaagttgaccaccaattgaggaacatctactggacatggaggaatttcaaacctaaaagttcctagcaagttgttg 11275371  T
Q  121 tccttagttgtttgcctctcaccctcataaacagaaattgataaactattttggttgggttcactggtggtgtatacatgttccatattggtcggaatcg 220  Q
    ||||||||||||| ||||||||||||||||| |  |||||  | |   |||||||| |||  | | |||||| |||| | |||| | ||||| ||||||     
T  11275372 tccttagttgttttcctctcaccctcataaatactaattgcaacaaatttttggttaggtatagttgtggtgaatacttcttccttgttggtaggaatca 11275471  T
Q  221 tggtattcctaggaattattacgctcatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttc 320  Q
    |||||||||| |||| ||||    ||||||   ||| ||   | |||||||||| |||||| ||||| || |||||||||||||||||||||||||||||    
T  11275472 tggtattcctgggaaatattgttttcatgattccccattgtgttttaattccaatggacaatggattaacttccctcaatgtcaaatcttgaaacttttc 11275571  T
Q  321 acaaatcacaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataactccgtcccactgctcttt 420  Q
    ||||| | |||||||   |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||   ||      
T  11275572 acaaagctcaccactcaatataaaagcatggatagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataacttcgtcctgctatgctca 11275671  T
Q  421 ttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccac 520  Q
    |||||| | |||||||||| |||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||   ||||||||    
T  11275672 ttaatttcaaagaaatcaaccaaaaggtcttgcacttttacaatcctggtagacccgccaacaagcacaacatcatgaatgttactcttgtttatcccac 11275771  T
Q  521 tatcttctatacacttttctacactctccatgcac 555  Q
    ||||| ||||||||||||||||| | |||||||||    
T  11275772 tatctgctatacacttttctacaatttccatgcac 11275806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 270 - 555
Target Start/End: Original strand, 11196305 - 11196575
Alignment:
Q  270 tccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgca 369  Q
    |||||||||||||||| |||| |||  ||||   |||||||||| ||| |||| || | |||||||   |||| |||||||||||||||||||||||||     
T  11196305 tccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatgcc 11196404  T
Q  370 accgcctcatctgcattgatgcttttgcataactccgtcccactgctctttttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctgg 469  Q
    |||||||||||  |||||||||||||||||||   | |||| |               ||||||||||| |||  | ||||||||||||||||||||| |    
T  11196405 accgcctcatcgacattgatgcttttgcataaaagcttccccc---------------cgaagaaatcactcaccatttgttgcacttttacaatcctag 11196489  T
Q  470 tagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac 555  Q
    |||||||||||||||| ||||||||||||||| |||| ||  | |||||||||||   |||||||||||| ||| |||||||||||    
T  11196490 tagagccgccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatctccatgcac 11196575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 270 - 555
Target Start/End: Original strand, 11160719 - 11160989
Alignment:
Q  270 tccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgca 369  Q
    |||||||||||||||| |||| |||  ||||   |||||||||| ||| |||| |  | |||||||   |||| |||||||||||||||||||||||||     
T  11160719 tccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactacgctcaccactcaatatagaagcatggacagcagcgccatatgcc 11160818  T
Q  370 accgcctcatctgcattgatgcttttgcataactccgtcccactgctctttttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctgg 469  Q
    || ||||||||  |||||||||||||||||||   | |||| |               ||||||||||| |||  | ||||||||||||||||||||| |    
T  11160819 actgcctcatcgacattgatgcttttgcataaaagcttccccc---------------cgaagaaatcactcaccatttgttgcacttttacaatcctag 11160903  T
Q  470 tagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac 555  Q
    ||||||| |||||||| ||||||||||||||| |||| ||  | |||||||||||   |||||||||||||||| |||||||||||    
T  11160904 tagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttctacaatctccatgcac 11160989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 339 - 555
Target Start/End: Original strand, 11155921 - 11156122
Alignment:
Q  339 tataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataactccgtcccactgctctttttaattccgaagaaatca 438  Q
    |||| ||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||   | |||| |               |||||||||||    
T  11155921 tatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataaaagcttccccc---------------cgaagaaatca 11156005  T
Q  439 atcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacactttt 538  Q
     |||  | |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||  | |||||||||||   |||||||||||    
T  11156006 ctcaccatttgttgcacttttacaatcctggtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacactttt 11156105  T
Q  539 ctacactctccatgcac 555  Q
    | ||| |||||||||||    
T  11156106 ccacaatctccatgcac 11156122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 339 - 555
Target Start/End: Original strand, 11199364 - 11199565
Alignment:
Q  339 tataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataactccgtcccactgctctttttaattccgaagaaatca 438  Q
    |||| ||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||   | |||| |               |||||||||||    
T  11199364 tatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataaaagcttccccc---------------cgaagaaatca 11199448  T
Q  439 atcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacactttt 538  Q
     |||  | ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||| ||  | |||||||||||   |||||||||||    
T  11199449 ctcaccatttgttgcacttttacaatcctagtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaattatacactttt 11199548  T
Q  539 ctacactctccatgcac 555  Q
    ||||| |||||||||||    
T  11199549 ctacaatctccatgcac 11199565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 457 - 555
Target Start/End: Complemental strand, 11315147 - 11315049
Alignment:
Q  457 tttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac 555  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||| || || ||||||||||| |||| ||||||||||||| ||| |||||||    
T  11315147 tttacaatcctagtagagccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcctctagacacttttctacaatcttcatgcac 11315049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 427 - 555
Target Start/End: Complemental strand, 11241867 - 11241739
Alignment:
Q  427 ccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatctt 526  Q
    |||||||||||| |||  | |||||||||||||||||||||  ||||||| |||||||| ||||||||||||||| |||| ||  | |||||||||||      
T  11241867 ccgaagaaatcactcaccatttgttgcacttttacaatcctaatagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaa 11241768  T
Q  527 ctatacacttttctacactctccatgcac 555  Q
     |||||||||||| ||| |||||||||||    
T  11241767 ttatacacttttccacaatctccatgcac 11241739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 11315240 - 11315188
Alignment:
Q  349 tggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataa 401  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  11315240 tggacagcagcgccatatgcaaccgccttatcagcattgatgcttttgcataa 11315188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 270 - 401
Target Start/End: Complemental strand, 11242009 - 11241878
Alignment:
Q  270 tccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgca 369  Q
    |||||||||||||| | |||| |||  ||||   |||||||||| ||| |||| || | |||||||   |||| ||||||||||| |||||||||||||     
T  11242009 tccaagggacaaagaaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacaacagcgccatatgcc 11241910  T
Q  370 accgcctcatctgcattgatgcttttgcataa 401  Q
    || ||||||||  |||||||||||||||||||    
T  11241909 acagcctcatcgacattgatgcttttgcataa 11241878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 430 - 500
Target Start/End: Original strand, 11132721 - 11132791
Alignment:
Q  430 aagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaat 500  Q
    ||||||||| |||| | |||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  11132721 aagaaatcactcaatatttgttgtacttttacaatcctcgtagacccgccaacaaggacaacatcatgaat 11132791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 11319866 - 11319818
Alignment:
Q  287 tgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccact 335  Q
    |||| |||||||||||||||||||||||||||||||||| | |||||||    
T  11319866 tgacttccctcaatgtcaaatcttgaaacttttcacaaaactcaccact 11319818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 405
Target Start/End: Original strand, 11132652 - 11132711
Alignment:
Q  346 gcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataactcc 405  Q
    |||||||||||||| ||| ||||||  || ||||||||||| ||||||||||||||||||    
T  11132652 gcatggacagcagcaccacatgcaatagcttcatctgcatttatgcttttgcataactcc 11132711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 11155693 - 11155741
Alignment:
Q  105 tccaagcaagttgttttccttagttgtttgcctctcaccctcataaaca 153  Q
    ||||||||||||||||||| ||||| ||| ||||||||| |||||||||    
T  11155693 tccaagcaagttgttttccctagttattttcctctcaccttcataaaca 11155741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 361 - 555
Target Start/End: Original strand, 546 - 740
Alignment:
Q  361 ccatatgcaaccgcctcatctgcattgatgcttttgcataactccgtcccactgctctttttaattccgaagaaatcaatcaaaagttgttgcactttta 460  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||   ||  |||||| | |||||||||| ||||||   ||| |||||||    
T  546 ccatatgcaaccgcctcatctgcattgatgcttttgcataacttcgtcctactatgctcattaatttcaaagaaatcaaccaaaaggccttgaactttta 645  T
Q  461 caatcctggtagagccgccaacaagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac 555  Q
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T  646 caatccttgtagagccgccaacaaggacaacatcatgaaagttactcttgtttatcccactatctgctatacagttttctacactctccatgcac 740  T

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