View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7116_low_7 (Length: 533)
Name: NF7116_low_7
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7116_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 523
Target Start/End: Complemental strand, 11929946 - 11929439
Alignment:
| Q |
20 |
tccctctatttgattgtttgataaatctaaagtggccaagtttgttggtggtgcacttttatcacataaaaatgaaaacaattgtgaaaatttattttca |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | ||||||||| || |||||||||||| |||||||||||||||||| |
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| T |
11929946 |
tccctctatttgattgtttgataaatctaaagtggccaactttgtcggtggtggatttttatcacgtagaaatgaaaacaaatgtgaaaatttattttca |
11929847 |
T |
|
| Q |
120 |
aagagcattagatgtgaagcttgtagcaaaaaggacggaactccaccttcgaattgatttgaattcaaaaatatagccggattttgaggaagcttgaatg |
219 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
11929846 |
aagagaattagatgtgaagattgtagcaaaaaggacggaactccaccttcaaattgatttgaattcaaaaatatcgccggattttgaggaagctggaatg |
11929747 |
T |
|
| Q |
220 |
aaaaatttggtattgtacctctgagattgttgtgagacatattcatgaataacatatattgtgagttgttccaaatccactctggtacatagtcattaat |
319 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
11929746 |
aaaaatttggtattgtacctctgagattattgtgagacatattcatgaataacatatattgtgagttgttccaaatcaattctggtacatagtcattaat |
11929647 |
T |
|
| Q |
320 |
ccctgcatccgaaatatcaagttccaatatggatctttgagttttaagccaactaggaaagcttgaacccaacttgcaagatgccagcatcaaaaatgtt |
419 |
Q |
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||||||||| ||||||||||||| ||||| ||| || |||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||| |
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| T |
11929646 |
ccctgcatcagaaatatcaagtttcaatagggacctgtgagttttaagccaactaggaaagcttgaaaccaacttgcaagatgccaacttcaaagatgtt |
11929547 |
T |
|
| Q |
420 |
aactggaaaggaggaacccaactacgtga----aattcttagggaaactgagttgtaacttaagtacagtgcttttaaattggaaagattagtgagatgc |
515 |
Q |
| |
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|||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||||||| |
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| T |
11929546 |
aactggaaaggaggaacccatctacgtgaaaataattgttagggaaactgagttgtaacttaaggacaacgattttaaattggaaaaattagtgagatgc |
11929447 |
T |
|
| Q |
516 |
gattcatt |
523 |
Q |
| |
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|||||||| |
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| T |
11929446 |
gattcatt |
11929439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 405
Target Start/End: Original strand, 11832049 - 11832434
Alignment:
| Q |
20 |
tccctctatttgattgtttgataaatctaaagtggccaagtttgttggtggtgcacttttatcacataaaaatgaaaacaattgtgaaaatttattttca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11832049 |
tccctctatttgattgtttgataaatctagagtggccaagtttgttggtggtgcttttttatcacataaaaatgaaaacaaatgtgaaaatttattttcg |
11832148 |
T |
|
| Q |
120 |
aagagcattagatgtgaagcttgtagcaaaaaggacggaactccaccttcgaattgatttgaattcaaaaatatagccggattttgaggaagcttgaatg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||| ||||| | ||||||||| ||| ||| |
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| T |
11832149 |
gagagcattagatgtgaagcttgtagcaaaaaggacggaactccaccctcaaattgatttgaattcaaacatacagccgaactttgaggaaacttatatg |
11832248 |
T |
|
| Q |
220 |
aaaaatttggtattgtacctctgagattgttgtgagacatattcatgaataacatatattgtgagttgttccaaatccactctggtacatagtcattaat |
319 |
Q |
| |
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||||| ||| |||||||| | ||||||||||| ||||||||||| |||| ||||| ||||||||||||||||| ||| || ||||| |||||| |
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| T |
11832249 |
gaaaatctggaattgtaccgattagattgttgtgcgacatattcattaatatcatatgttgtgagttgttccaaaaccattcgggtacgccaccattaag |
11832348 |
T |
|
| Q |
320 |
ccctgcatccgaaatatcaagttccaatatggatctttgagttttaagccaactaggaaagcttgaacccaacttgcaagatgcca |
405 |
Q |
| |
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||||| ||| |||||||||||| || |||||||||||| |||| |||||||| |||||||||||||||| |||||||||||||| |
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| T |
11832349 |
ccctgtatcagaaatatcaagtcgcagtatggatctttgtgtttggagccaacttggaaagcttgaacccagcttgcaagatgcca |
11832434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 20 - 443
Target Start/End: Complemental strand, 11964232 - 11963809
Alignment:
| Q |
20 |
tccctctatttgattgtttgataaatctaaagtggccaagtttgttggtggtgcacttttatcacataaaaatgaaaacaattgtgaaaatttattttca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||| ||||| | ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11964232 |
tccctctatttgattgtttgataaatctagagtgaccaagtttgttgttggtgaatttttatcacataaaaatgaaaacaaatgtgaaaatttattttcg |
11964133 |
T |
|
| Q |
120 |
aagagcattagatgtgaagcttgtagcaaaaaggacggaactccaccttcgaattgatttgaattcaaaaatatagccggattttgaggaagcttgaatg |
219 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||||| ||||||| ||| || |||||||||||||||||||||| | ||| | ||| | |||||| ||| |
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| T |
11964132 |
gagagcataagacgtgaaacttgtagcaaaaaggatggaactctaccctcaaattgatttgaattcaaaaatacacccgaactttcataaagcttatatg |
11964033 |
T |
|
| Q |
220 |
aaaaatttggtattgtacctctgagattgttgtgagacatattcatgaataacatatattgtgagttgttccaaatccactctggtacatagtcattaat |
319 |
Q |
| |
|
||||| ||| |||||||| | ||||||||||| ||||||||||| |||| |||| || ||||||||||||| ||| | |||||| ||||||| |
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|
| T |
11964032 |
gaaaatctggaattgtaccgattagattgttgtgcgacatattcattaatatcatagcatgcgagttgttccaaaaccatccgggtacaccatcattaag |
11963933 |
T |
|
| Q |
320 |
ccctgcatccgaaatatcaagttccaatatggatctttgagttttaagccaactaggaaagcttgaacccaacttgcaagatgccagcatcaaaaatgtt |
419 |
Q |
| |
|
||||| ||| ||||||||||||| || |||| ||||||| || | |||||||| ||||||||||||||||||||||||||||||| | ||||| ||||| |
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| T |
11963932 |
ccctgtatcagaaatatcaagttgcactatgtatctttgtgtctggagccaacttggaaagcttgaacccaacttgcaagatgccaacttcaaagatgtt |
11963833 |
T |
|
| Q |
420 |
aactggaaaggaggaacccaacta |
443 |
Q |
| |
|
|| | ||||||||||||||||||| |
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| T |
11963832 |
aatttgaaaggaggaacccaacta |
11963809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 20 - 405
Target Start/End: Original strand, 11851313 - 11851698
Alignment:
| Q |
20 |
tccctctatttgattgtttgataaatctaaagtggccaagtttgttggtggtgcacttttatcacataaaaatgaaaacaattgtgaaaatttattttca |
119 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
11851313 |
tccctcaatttgattgtttgataaatctagagtgaccaagtttgttgatggtgcatttttatcacataaaaatgaaaacaaatgtgaaaatttatttacg |
11851412 |
T |
|
| Q |
120 |
aagagcattagatgtgaagcttgtagcaaaaaggacggaactccaccttcgaattgatttgaattcaaaaatatagccggattttgaggaagcttgaatg |
219 |
Q |
| |
|
|||||| |||| |||| |||||||||||||||| ||||||||||| || |||||||||||||| ||||||| ||||| | |||||| || ||| ||| |
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| T |
11851413 |
gagagcaatagaaatgaaacttgtagcaaaaaggaaggaactccaccctcaaattgatttgaattaaaaaatacagccgaaatttgagaaaacttatatg |
11851512 |
T |
|
| Q |
220 |
aaaaatttggtattgtacctctgagattgttgtgagacatattcatgaataacatatattgtgagttgttccaaatccactctggtacatagtcattaat |
319 |
Q |
| |
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||||| ||| |||||||| | ||||||||||| ||||||||||| |||| ||||||| | ||||||||||||| ||| || ||||| |||||| |
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| T |
11851513 |
gaaaatatggaattgtaccgattagattgttgtgcgacatattcattaatatcatatatagagagttgttccaaaaccattcgggtacgccaccattaag |
11851612 |
T |
|
| Q |
320 |
ccctgcatccgaaatatcaagttccaatatggatctttgagttttaagccaactaggaaagcttgaacccaacttgcaagatgcca |
405 |
Q |
| |
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||||| ||| |||||||||||| || |||||||||||| |||| |||||||| |||||||||||||||| |||||||||||||| |
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|
| T |
11851613 |
ccctgtatcagaaatatcaagtcgcagtatggatctttgtgtttggagccaacttggaaagcttgaacccagcttgcaagatgcca |
11851698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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