View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7116_low_8 (Length: 508)
Name: NF7116_low_8
Description: NF7116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7116_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 3 - 167
Target Start/End: Original strand, 12310354 - 12310518
Alignment:
| Q |
3 |
agaaagaaaatagttaattggataaagcaaaattgattaaattgtaacaagagttaacctacaattacatcctcctatgctatagaagttgaatagttta |
102 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12310354 |
agaaagaaaattgttaattggataaagcaaaattgattaaattgtaacaaaagttaacctacaattacatcctcctatgctatagaagttgaatagttta |
12310453 |
T |
|
| Q |
103 |
atttccctgtatagtacaataaatagcaaacaaaatcaaactagatcgagtcaaggaattggagg |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12310454 |
atttccctgtatagtacaataaatagcaaacaaaatcaaactagatcgagtcaaggaattggagg |
12310518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 325 - 487
Target Start/End: Original strand, 12320162 - 12320313
Alignment:
| Q |
325 |
aataagagaagcaccaaactaccactctcatcttttatcctacaaatgttaattgaaatgctaagaaattgggttatacgtctgccaaagaacgaagcca |
424 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||| ||||||||| |||||| |
|
|
| T |
12320162 |
aataagagaagcaccaaaataccactctcatcttttatcctacaaatgttaattcaa-----------ttgggttatacctcttccaaagaacaaagcca |
12320250 |
T |
|
| Q |
425 |
agtgacacatgtttaagagtaaaaaggtaaaaccagcactgttggtgcatatatgctggtgtc |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12320251 |
agtgacacatgtttaagagtaaaaaggtaaaaccagcacggttggtgcatatatgctggtgtc |
12320313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 219 - 298
Target Start/End: Original strand, 12319707 - 12319786
Alignment:
| Q |
219 |
atatacttgtattgtgtttgcttcgagtgtttacacaggacaaacaacaaagtggtgctctttaaagtgtcgaagttaaa |
298 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
12319707 |
atatacttgtattgtgtttgcttccagtgtttacacaggacaaacaacaaagtggcgatctttaaagtgtcgaagttaaa |
12319786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 476
Target Start/End: Original strand, 6919736 - 6919878
Alignment:
| Q |
332 |
gaagcaccaaactaccactctcatcttttatcctacaaatgttaattgaaatgctaagaaattgggttatacgtctgccaaagaacgaagccaagtgaca |
431 |
Q |
| |
|
||||||||||| ||| | ||||||||||| |||| |||||||| ||||| ||| || |||||| |||||| | ||||| ||| |||||||||| || |
|
|
| T |
6919736 |
gaagcaccaaaatactaagttcatcttttattctacgaatgttaactgaaacgct-agtaattggtttatacacttaccaaaaaactaagccaagtggca |
6919834 |
T |
|
| Q |
432 |
catgtttaagagtaaaaaggtaaaaccagcactgttggtgcatat |
476 |
Q |
| |
|
|||| |||| || ||||||||||||| |||||| || |||||||| |
|
|
| T |
6919835 |
catg-ttaaaagaaaaaaggtaaaactagcactattagtgcatat |
6919878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University