View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7117_high_10 (Length: 363)
Name: NF7117_high_10
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7117_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 51361665 - 51361306
Alignment:
| Q |
1 |
gttttcttagaattttgatttcttttaactcgattctttcaaaatttgcgtgcaaagagagaacggctcccgtttatttaaacacatgttcaagtcatat |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
51361665 |
gttttctttgaattttgatttcttttaactcgattcttacaaaatttgcgtgcaaagagataacggctcccatttatttaaacacatgttcaagtcatat |
51361566 |
T |
|
| Q |
101 |
cttatttaacgtgagactcttaacgctctcttttagacatataaaaggatatctagagcgtgactcaagtggttcgatagcaataatctgaaagtagatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
51361565 |
cttatttaacgtgagactcttaacgctttcttttagacatataaaaggatatctagaacgtgactcaagtggttcgatagcaataatctgatagtagatg |
51361466 |
T |
|
| Q |
201 |
gccaaataggtcgaggataagctttggtaccatcttaattagaactttagttaagtgagattcttaacatgtttaatgaaatgacctagtccccatgata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51361465 |
gccaaataggtcgaggataagctttggtaccatcttaattagaactttagttaagtgagattcttaacatgtttaatgaaatgacctagtccccatgata |
51361366 |
T |
|
| Q |
301 |
aggcaaaccacattttgaatcttagccaagagagatattatgtcaaactaatatcttctt |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51361365 |
aggcaaaccacattttgaatcttagccaagagagatattatgtcaaattaatatcttctt |
51361306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University