View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7117_high_15 (Length: 295)
Name: NF7117_high_15
Description: NF7117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7117_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 101 - 287
Target Start/End: Original strand, 25379139 - 25379325
Alignment:
| Q |
101 |
agcagtagtactgatgaacgctttttgagtagtcaaagttttgatatagtcttgaagaatagaagattgtggtttaccatcagtggtttgaggccttttg |
200 |
Q |
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| T |
25379139 |
agcagtagtactgatgaacgctttttgagtagtcaaagttttgatatagtcttgaagaatagaagattgtggtttaccatcagtggtttgaggccttttg |
25379238 |
T |
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| Q |
201 |
ttctttctccttgaattttgtctcctttttgttgcattccaatgattctttattgcattctcagttcttccaggaattctctctgct |
287 |
Q |
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| T |
25379239 |
ttctttctccttgaattttgtctcctttttgttgcattccaatgattctttattgcattctcagttcttccaggaattctctttgct |
25379325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 25379006 - 25379115
Alignment:
| Q |
1 |
atataagtggtgatgatgaattttcatgagataggttagaaaaaacaaaggaagattggtttgaagaagggtcctcagagatcgctgacacggagctagt |
100 |
Q |
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| T |
25379006 |
atataagtggtgatgatgaattttcatgagataggttagaaaaaacaaaggaagattggtttgaagaagggtcctcagagatcgctgacacggagctagt |
25379105 |
T |
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| Q |
101 |
agcagtagta |
110 |
Q |
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| T |
25379106 |
agcagtagta |
25379115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 29671189 - 29671268
Alignment:
| Q |
198 |
ttgttctttctccttgaattttgtctcctttttgttgcattccaatgattctttattgcattctcagttcttccaggaat |
277 |
Q |
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| T |
29671189 |
ttgttctttcttcttgaattttgtcttctttttgtggcattccaatgattttttatggcattttcagttcttcctggaat |
29671268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 43866564 - 43866521
Alignment:
| Q |
228 |
tttgttgcattccaatgattctttattgcattctcagttcttcc |
271 |
Q |
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| T |
43866564 |
tttgttgcattccaatggttttttattgcattctcagttcttcc |
43866521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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